RNA–Protein interactions for RNA: ENST00000576348.1

ERCC4-208, Transcript of ERCC excision repair 4, endonuclease catalytic subunit, humanhuman

TSL 2

Gene ERCC4, Length 604 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4-208ENST00000576348 KRT28Q7Z3Y7 464 aa22.35■■□□□ 1.17
ERCC4-208ENST00000576348 NME9Q86XW9 330 aa22.35■■□□□ 1.17
ERCC4-208ENST00000576348 KIF1AQ12756 1690 aa22.35■■□□□ 1.17
ERCC4-208ENST00000576348 FYB1O15117 783 aa22.34■■□□□ 1.17
ERCC4-208ENST00000576348 XPCQ01831 940 aaPredicted RBP22.34■■□□□ 1.17
ERCC4-208ENST00000576348 COG3Q96JB2 828 aa22.34■■□□□ 1.17
ERCC4-208ENST00000576348 RGPD8O14715 1765 aaPredicted RBP22.33■■□□□ 1.17
ERCC4-208ENST00000576348 CERKQ8TCT0 537 aa22.33■■□□□ 1.17
ERCC4-208ENST00000576348 PARD3Q8TEW0 1356 aa22.33■■□□□ 1.17
ERCC4-208ENST00000576348 MYBBP1AQ9BQG0 1328 aaKnown RBP22.32■■□□□ 1.16
ERCC4-208ENST00000576348 AKAP12Q02952 1782 aa22.31■■□□□ 1.16
ERCC4-208ENST00000576348 UBAP1LF5GYI3 381 aa22.31■■□□□ 1.16
ERCC4-208ENST00000576348 TNNT2P45379 298 aaPredicted RBP22.31■■□□□ 1.16
ERCC4-208ENST00000576348 MON2Q7Z3U7 1717 aa22.31■■□□□ 1.16
ERCC4-208ENST00000576348 SCAF1Q9H7N4 1312 aaKnown RBP22.31■■□□□ 1.16
ERCC4-208ENST00000576348 LMOD2Q6P5Q4 547 aa22.3■■□□□ 1.16
ERCC4-208ENST00000576348 ABTB2Q8N961 1025 aa22.3■■□□□ 1.16
ERCC4-208ENST00000576348 IQSEC2Q5JU85 1478 aa22.29■■□□□ 1.16
ERCC4-208ENST00000576348 CCER2I3L3R5 266 aa22.29■■□□□ 1.16
ERCC4-208ENST00000576348 SSH2Q76I76 1423 aa22.29■■□□□ 1.16
ERCC4-208ENST00000576348 NLRP6P59044 892 aa22.28■■□□□ 1.16
ERCC4-208ENST00000576348 DDX17Q92841 729 aaKnown RBP22.28■■□□□ 1.16
ERCC4-208ENST00000576348 PIP4K2BP78356 416 aa22.27■■□□□ 1.16
ERCC4-208ENST00000576348 PPP2R1AP30153 589 aa22.26■■□□□ 1.15
ERCC4-208ENST00000576348 NLRP13Q86W25 1043 aa22.26■■□□□ 1.15
ERCC4-208ENST00000576348 ZRANB1Q9UGI0 708 aa22.26■■□□□ 1.15
ERCC4-208ENST00000576348 NUTM2GQ5VZR2 741 aa22.25■■□□□ 1.15
ERCC4-208ENST00000576348 NRKQ7Z2Y5 1582 aa22.25■■□□□ 1.15
ERCC4-208ENST00000576348 SBNO1A3KN83 1393 aa22.25■■□□□ 1.15
ERCC4-208ENST00000576348 MRS2Q9HD23 443 aa22.24■■□□□ 1.15
ERCC4-208ENST00000576348 USP31Q70CQ4 1352 aa22.23■■□□□ 1.15
ERCC4-208ENST00000576348 SOX12O15370 315 aa22.21■■□□□ 1.15
ERCC4-208ENST00000576348 PLEKHG5O94827 1062 aa22.21■■□□□ 1.15
ERCC4-208ENST00000576348 KIF20BQ96Q89 1820 aa22.21■■□□□ 1.15
ERCC4-208ENST00000576348 TNS3Q68CZ2 1445 aa22.21■■□□□ 1.15
ERCC4-208ENST00000576348 CFAP53Q96M91 514 aa22.19■■□□□ 1.14
ERCC4-208ENST00000576348 SOS2Q07890 1332 aaPredicted RBP22.19■■□□□ 1.14
ERCC4-208ENST00000576348 ARHGEF10O15013 1369 aa22.19■■□□□ 1.14
ERCC4-208ENST00000576348 OVOS2A0A0J9YW53 1432 aa22.19■■□□□ 1.14
ERCC4-208ENST00000576348 OVOS2Q6IE36 1432 aa22.19■■□□□ 1.14
ERCC4-208ENST00000576348 PXDNQ92626 1479 aa22.19■■□□□ 1.14
ERCC4-208ENST00000576348 SPATA31A3Q5VYP0 1347 aa22.18■■□□□ 1.14
ERCC4-208ENST00000576348 PPM1GO15355 546 aaPredicted RBP22.16■■□□□ 1.14
ERCC4-208ENST00000576348 KCNH5Q8NCM2 988 aa22.16■■□□□ 1.14
ERCC4-208ENST00000576348 ROBO1Q9Y6N7 1651 aa22.16■■□□□ 1.14
ERCC4-208ENST00000576348 MTHFSP49914 203 aa22.15■■□□□ 1.14
ERCC4-208ENST00000576348 AATKQ6ZMQ8 1374 aa22.14■■□□□ 1.14
ERCC4-208ENST00000576348 PIK3C2AO00443 1686 aa22.14■■□□□ 1.14
ERCC4-208ENST00000576348 LRRC59Q96AG4 307 aaKnown RBP22.14■■□□□ 1.13
ERCC4-208ENST00000576348 ANKRD26Q9UPS8 1709 aa22.14■■□□□ 1.13
ERCC4-208ENST00000576348 HAP1P54257 671 aaPredicted RBP22.13■■□□□ 1.13
ERCC4-208ENST00000576348 TRPM3Q9HCF6 1732 aaPredicted RBP22.12■■□□□ 1.13
ERCC4-208ENST00000576348 CCDC184Q52MB2 194 aa22.12■■□□□ 1.13
ERCC4-208ENST00000576348 ZBTB7CA1YPR0 619 aa22.11■■□□□ 1.13
ERCC4-208ENST00000576348 FBLN1P23142 703 aa22.11■■□□□ 1.13
ERCC4-208ENST00000576348 RRS1Q15050 365 aaKnown RBP22.11■■□□□ 1.13
ERCC4-208ENST00000576348 USP19O94966 1318 aa22.1■■□□□ 1.13
ERCC4-208ENST00000576348 NHSL1Q5SYE7 1610 aa22.1■■□□□ 1.13
ERCC4-208ENST00000576348 AHDC1Q5TGY3 1603 aaPredicted RBP22.1■■□□□ 1.13
ERCC4-208ENST00000576348 POLKQ9UBT6 870 aa22.1■■□□□ 1.13
ERCC4-208ENST00000576348 AMPHP49418 695 aa22.09■■□□□ 1.13
ERCC4-208ENST00000576348 WDR43Q15061 677 aaKnown RBP eCLIP22.09■■□□□ 1.13
ERCC4-208ENST00000576348 EMILIN1Q9Y6C2 1016 aa22.09■■□□□ 1.13
ERCC4-208ENST00000576348 GCP02774 474 aa22.08■■□□□ 1.13
ERCC4-208ENST00000576348 FAM9BQ8IZU0 186 aa22.08■■□□□ 1.13
ERCC4-208ENST00000576348 CABLES1Q8TDN4 633 aa22.06■■□□□ 1.12
ERCC4-208ENST00000576348 MAP3K19Q56UN5 1328 aa22.06■■□□□ 1.12
ERCC4-208ENST00000576348 ALS2Q96Q42 1657 aa22.05■■□□□ 1.12
ERCC4-208ENST00000576348 NUDCQ9Y266 331 aa22.05■■□□□ 1.12
ERCC4-208ENST00000576348 SLIT3O75094 1523 aa22.04■■□□□ 1.12
ERCC4-208ENST00000576348 USP54Q70EL1 1684 aa22.04■■□□□ 1.12
ERCC4-208ENST00000576348 DIAPH1O60610 1272 aaKnown RBP22.03■■□□□ 1.12
ERCC4-208ENST00000576348 PNISRQ8TF01 805 aaKnown RBP22.03■■□□□ 1.12
ERCC4-208ENST00000576348 SMG6Q86US8 1419 aaKnown RBP22.03■■□□□ 1.12
ERCC4-208ENST00000576348 FLT4P35916 1363 aa22.02■■□□□ 1.12
ERCC4-208ENST00000576348 ZC3H6P61129 1189 aaKnown RBP22.02■■□□□ 1.12
ERCC4-208ENST00000576348 CDK12Q9NYV4 1490 aaPredicted RBP22.02■■□□□ 1.12
ERCC4-208ENST00000576348 PHLPP1O60346 1717 aa22.01■■□□□ 1.11
ERCC4-208ENST00000576348 MED1Q15648 1581 aaPredicted RBP22.01■■□□□ 1.11
ERCC4-208ENST00000576348 RTL1A6NKG5 1358 aa22■■□□□ 1.11
ERCC4-208ENST00000576348 KIF24Q5T7B8 1368 aa22■■□□□ 1.11
ERCC4-208ENST00000576348 PNPLA6Q8IY17 1366 aa22■■□□□ 1.11
ERCC4-208ENST00000576348 U2SURPO15042 1029 aaKnown RBP22■■□□□ 1.11
ERCC4-208ENST00000576348 NFAT5O94916 1531 aa22■■□□□ 1.11
ERCC4-208ENST00000576348 ARHGEF25Q86VW2 580 aa21.99■■□□□ 1.11
ERCC4-208ENST00000576348 YTHDC1Q96MU7 727 aaKnown RBP21.99■■□□□ 1.11
ERCC4-208ENST00000576348 HOXC9P31274 260 aa21.98■■□□□ 1.11
ERCC4-208ENST00000576348 INSRP06213 1382 aa21.98■■□□□ 1.11
ERCC4-208ENST00000576348 U2AF1L5P0DN76 240 aaPredicted RBP21.97■■□□□ 1.11
ERCC4-208ENST00000576348 U2AF1Q01081 240 aaKnown RBP eCLIP21.97■■□□□ 1.11
ERCC4-208ENST00000576348 HSP90AB2PQ58FF8 381 aa21.97■■□□□ 1.11
ERCC4-208ENST00000576348 IP6K1Q92551 441 aa21.97■■□□□ 1.11
ERCC4-208ENST00000576348 PRDM11Q9NQV5 511 aa21.97■■□□□ 1.11
ERCC4-208ENST00000576348 COL16A1Q07092 1604 aaPredicted RBP21.97■■□□□ 1.11
ERCC4-208ENST00000576348 MARF1Q9Y4F3 1742 aaKnown RBP21.96■■□□□ 1.11
ERCC4-208ENST00000576348 LTV1Q96GA3 475 aaPredicted RBP21.95■■□□□ 1.1
ERCC4-208ENST00000576348 KIAA0232Q92628 1395 aa21.95■■□□□ 1.1
ERCC4-208ENST00000576348 JCADQ9P266 1359 aa21.95■■□□□ 1.1
ERCC4-208ENST00000576348 HSPA1LP34931 641 aa21.94■■□□□ 1.1
ERCC4-208ENST00000576348 CPDO75976 1380 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms