RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 IQGAP1P46940 1657 aa9.64□□□□□ -0.87
VPS53-217ENST00000575100 ALKQ9UM73 1620 aa9.64□□□□□ -0.87
VPS53-217ENST00000575100 ZNF592Q92610 1267 aa9.64□□□□□ -0.87
VPS53-217ENST00000575100 RAB3GAP2Q9H2M9 1393 aa9.64□□□□□ -0.87
VPS53-217ENST00000575100 HFM1A2PYH4 1435 aa9.63□□□□□ -0.87
VPS53-217ENST00000575100 KIF3BO15066 747 aa9.63□□□□□ -0.87
VPS53-217ENST00000575100 SKIV2LQ15477 1246 aaKnown RBP9.63□□□□□ -0.87
VPS53-217ENST00000575100 BCCIPQ9P287 314 aaKnown RBP eCLIP9.63□□□□□ -0.87
VPS53-217ENST00000575100 UGGT1Q9NYU2 1555 aa9.63□□□□□ -0.87
VPS53-217ENST00000575100 STRCP1A6NGW2 1772 aa9.63□□□□□ -0.87
VPS53-217ENST00000575100 SYNMO15061 1565 aa9.63□□□□□ -0.87
VPS53-217ENST00000575100 SREK1Q8WXA9 508 aaKnown RBP9.63□□□□□ -0.87
VPS53-217ENST00000575100 MROH1Q8NDA8 1641 aa9.62□□□□□ -0.87
VPS53-217ENST00000575100 ABCC3O15438 1527 aa9.62□□□□□ -0.87
VPS53-217ENST00000575100 SETD5Q9C0A6 1442 aa9.62□□□□□ -0.87
VPS53-217ENST00000575100 CARNS1A5YM72 827 aa9.62□□□□□ -0.87
VPS53-217ENST00000575100 CSB-PGBD3P0DP91 1061 aa9.62□□□□□ -0.87
VPS53-217ENST00000575100 NCLP19338 710 aaKnown RBP9.62□□□□□ -0.87
VPS53-217ENST00000575100 PDAP1Q13442 181 aaKnown RBP9.62□□□□□ -0.87
VPS53-217ENST00000575100 FBXO31Q5XUX0 539 aaPredicted RBP9.62□□□□□ -0.87
VPS53-217ENST00000575100 GLMNQ92990 594 aa9.62□□□□□ -0.87
VPS53-217ENST00000575100 PSMD1Q99460 953 aa9.62□□□□□ -0.87
VPS53-217ENST00000575100 NPHP4O75161 1426 aaPredicted RBP9.62□□□□□ -0.87
VPS53-217ENST00000575100 ADGRL2O95490 1459 aa9.61□□□□□ -0.87
VPS53-217ENST00000575100 ROCK1Q13464 1354 aa9.61□□□□□ -0.87
VPS53-217ENST00000575100 SRPK2P78362 688 aaKnown RBP9.61□□□□□ -0.87
VPS53-217ENST00000575100 C8orf37Q96NL8 207 aa9.61□□□□□ -0.87
VPS53-217ENST00000575100 BRPF3Q9ULD4 1205 aa9.61□□□□□ -0.87
VPS53-217ENST00000575100 TSPY4P0CV99 314 aa9.61□□□□□ -0.87
VPS53-217ENST00000575100 TSPY10P0CW01 314 aa9.61□□□□□ -0.87
VPS53-217ENST00000575100 CEP152O94986 1710 aa9.61□□□□□ -0.87
VPS53-217ENST00000575100 UBR1Q8IWV7 1749 aa9.61□□□□□ -0.87
VPS53-217ENST00000575100 WASHC2CQ9Y4E1 1318 aa9.6□□□□□ -0.87
VPS53-217ENST00000575100 ANKLE2Q86XL3 938 aa9.6□□□□□ -0.87
VPS53-217ENST00000575100 THEMISQ8N1K5 641 aaPredicted RBP9.6□□□□□ -0.87
VPS53-217ENST00000575100 ERVK-7P63135 1459 aa9.6□□□□□ -0.87
VPS53-217ENST00000575100 GCC2Q8IWJ2 1684 aa9.6□□□□□ -0.87
VPS53-217ENST00000575100 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.59□□□□□ -0.87
VPS53-217ENST00000575100 TOM1O60784 492 aa9.59□□□□□ -0.87
VPS53-217ENST00000575100 ZNF467Q7Z7K2 595 aaPredicted RBP9.59□□□□□ -0.87
VPS53-217ENST00000575100 SNRKQ9NRH2 765 aa9.59□□□□□ -0.87
VPS53-217ENST00000575100 ZC3H4Q9UPT8 1303 aaKnown RBP9.59□□□□□ -0.87
VPS53-217ENST00000575100 TCF3P15923 654 aa9.59□□□□□ -0.87
VPS53-217ENST00000575100 HSPA1LP34931 641 aa9.59□□□□□ -0.87
VPS53-217ENST00000575100 PROCA1Q8NCQ7 364 aaPredicted RBP9.59□□□□□ -0.87
VPS53-217ENST00000575100 REPIN1Q9BWE0 567 aaKnown RBP9.59□□□□□ -0.87
VPS53-217ENST00000575100 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.59□□□□□ -0.87
VPS53-217ENST00000575100 ANKRD30AQ9BXX3 1397 aa9.58□□□□□ -0.88
VPS53-217ENST00000575100 KDM4AO75164 1064 aa9.58□□□□□ -0.88
VPS53-217ENST00000575100 GNEQ9Y223 722 aaKnown RBP9.58□□□□□ -0.88
VPS53-217ENST00000575100 KIF15Q9NS87 1388 aa9.58□□□□□ -0.88
VPS53-217ENST00000575100 LRRC7Q96NW7 1537 aa9.57□□□□□ -0.88
VPS53-217ENST00000575100 TICAM2Q86XR7 235 aa9.57□□□□□ -0.88
VPS53-217ENST00000575100 BANK1Q8NDB2 785 aa9.57□□□□□ -0.88
VPS53-217ENST00000575100 PRDM15P57071 1507 aaPredicted RBP9.57□□□□□ -0.88
VPS53-217ENST00000575100 DUOX2Q9NRD8 1548 aa9.57□□□□□ -0.88
VPS53-217ENST00000575100 GNPATO15228 680 aa9.57□□□□□ -0.88
VPS53-217ENST00000575100 NLRP6P59044 892 aa9.57□□□□□ -0.88
VPS53-217ENST00000575100 PDIA6Q15084 440 aa9.57□□□□□ -0.88
VPS53-217ENST00000575100 XIRP1Q702N8 1843 aaKnown RBP9.57□□□□□ -0.88
VPS53-217ENST00000575100 CFAP65Q6ZU64 1925 aaKnown RBP9.57□□□□□ -0.88
VPS53-217ENST00000575100 ARHGAP23Q9P227 1491 aa9.56□□□□□ -0.88
VPS53-217ENST00000575100 SLIT1O75093 1534 aa9.56□□□□□ -0.88
VPS53-217ENST00000575100 POM121CA8CG34 1229 aa9.56□□□□□ -0.88
VPS53-217ENST00000575100 RBM42Q9BTD8 480 aaKnown RBP9.56□□□□□ -0.88
VPS53-217ENST00000575100 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.56□□□□□ -0.88
VPS53-217ENST00000575100 DHX57Q6P158 1386 aaKnown RBP9.56□□□□□ -0.88
VPS53-217ENST00000575100 KDM5AP29375 1690 aaKnown RBP9.56□□□□□ -0.88
VPS53-217ENST00000575100 ARHGAP31Q2M1Z3 1444 aa9.55□□□□□ -0.88
VPS53-217ENST00000575100 ANKRD50Q9ULJ7 1429 aa9.55□□□□□ -0.88
VPS53-217ENST00000575100 FECHP22830 423 aa9.55□□□□□ -0.88
VPS53-217ENST00000575100 CHRDL2Q6WN34 429 aa9.55□□□□□ -0.88
VPS53-217ENST00000575100 SCAF11Q99590 1463 aaKnown RBP9.54□□□□□ -0.88
VPS53-217ENST00000575100 PIP4K2BP78356 416 aa9.54□□□□□ -0.88
VPS53-217ENST00000575100 TSR1Q2NL82 804 aaKnown RBP9.54□□□□□ -0.88
VPS53-217ENST00000575100 VRTNQ9H8Y1 702 aa9.54□□□□□ -0.88
VPS53-217ENST00000575100 GDPD2Q9HCC8 539 aa9.54□□□□□ -0.88
VPS53-217ENST00000575100 SPDYE16A6NNV3 312 aaPredicted RBP9.54□□□□□ -0.88
VPS53-217ENST00000575100 CLSTN1O94985 981 aa9.54□□□□□ -0.88
VPS53-217ENST00000575100 ZNF16P17020 682 aaPredicted RBP9.54□□□□□ -0.88
VPS53-217ENST00000575100 DNAJC14Q6Y2X3 702 aaPredicted RBP9.54□□□□□ -0.88
VPS53-217ENST00000575100 CCER1Q8TC90 406 aaPredicted RBP9.54□□□□□ -0.88
VPS53-217ENST00000575100 SIRT1Q96EB6 747 aa9.54□□□□□ -0.88
VPS53-217ENST00000575100 ERBINQ96RT1 1412 aa9.53□□□□□ -0.88
VPS53-217ENST00000575100 CFAP70Q5T0N1 1121 aa9.53□□□□□ -0.88
VPS53-217ENST00000575100 PIK3C2BO00750 1634 aa9.52□□□□□ -0.89
VPS53-217ENST00000575100 UBXN4Q92575 508 aa9.52□□□□□ -0.89
VPS53-217ENST00000575100 ANKRD62A6NC57 917 aa9.52□□□□□ -0.89
VPS53-217ENST00000575100 TMEM88BA6NKF7 163 aa9.52□□□□□ -0.89
VPS53-217ENST00000575100 ERCC3P19447 782 aa9.52□□□□□ -0.89
VPS53-217ENST00000575100 TMED8Q6PL24 325 aaPredicted RBP9.52□□□□□ -0.89
VPS53-217ENST00000575100 PHF8Q9UPP1 1060 aa9.52□□□□□ -0.89
VPS53-217ENST00000575100 LMTK2Q8IWU2 1503 aa9.51□□□□□ -0.89
VPS53-217ENST00000575100 DPYSL4O14531 572 aa9.51□□□□□ -0.89
VPS53-217ENST00000575100 HIC1Q14526 733 aa9.51□□□□□ -0.89
VPS53-217ENST00000575100 SP7Q8TDD2 431 aaPredicted RBP9.51□□□□□ -0.89
VPS53-217ENST00000575100 TRIM52Q96A61 297 aa9.5□□□□□ -0.89
VPS53-217ENST00000575100 TMUB1Q9BVT8 246 aa9.5□□□□□ -0.89
VPS53-217ENST00000575100 HIRIP3Q9BW71 556 aaPredicted RBP9.5□□□□□ -0.89
VPS53-217ENST00000575100 NUTM2FA1L443 756 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms