RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 AFF2P51816 1311 aa9.26□□□□□ -0.93
NUP88-206ENST00000573169 SPATA31E1Q6ZUB1 1445 aa9.25□□□□□ -0.93
NUP88-206ENST00000573169 NUTM2FA1L443 756 aa9.25□□□□□ -0.93
NUP88-206ENST00000573169 ADAMTS2O95450 1211 aa9.25□□□□□ -0.93
NUP88-206ENST00000573169 C8orf37Q96NL8 207 aa9.25□□□□□ -0.93
NUP88-206ENST00000573169 RGL2O15211 777 aa9.24□□□□□ -0.93
NUP88-206ENST00000573169 RXRBP28702 533 aa9.24□□□□□ -0.93
NUP88-206ENST00000573169 TSPYL2Q9H2G4 693 aaPredicted RBP9.24□□□□□ -0.93
NUP88-206ENST00000573169 PLEKHH1Q9ULM0 1364 aa9.24□□□□□ -0.93
NUP88-206ENST00000573169 PRAG1Q86YV5 1406 aa9.23□□□□□ -0.93
NUP88-206ENST00000573169 CHRM1P11229 460 aaPredicted RBP9.23□□□□□ -0.93
NUP88-206ENST00000573169 XPCQ01831 940 aaPredicted RBP9.23□□□□□ -0.93
NUP88-206ENST00000573169 ESCO1Q5FWF5 840 aa9.23□□□□□ -0.93
NUP88-206ENST00000573169 SOS2Q07890 1332 aaPredicted RBP9.23□□□□□ -0.93
NUP88-206ENST00000573169 RAB3GAP2Q9H2M9 1393 aa9.23□□□□□ -0.93
NUP88-206ENST00000573169 QTRT2Q9H974 415 aaKnown RBP9.22□□□□□ -0.93
NUP88-206ENST00000573169 LRPPRCP42704 1394 aaKnown RBP9.22□□□□□ -0.93
NUP88-206ENST00000573169 IFT172Q9UG01 1749 aa9.22□□□□□ -0.93
NUP88-206ENST00000573169 CFAP70Q5T0N1 1121 aa9.21□□□□□ -0.94
NUP88-206ENST00000573169 UPF1Q92900 1129 aaKnown RBP eCLIP9.21□□□□□ -0.94
NUP88-206ENST00000573169 OTUD5Q96G74 571 aa9.21□□□□□ -0.94
NUP88-206ENST00000573169 NGLY1Q96IV0 654 aa9.21□□□□□ -0.94
NUP88-206ENST00000573169 ANKRD30BQ9BXX2 1392 aa9.21□□□□□ -0.94
NUP88-206ENST00000573169 LAMC1P11047 1609 aa9.2□□□□□ -0.94
NUP88-206ENST00000573169 FOXO3O43524 673 aa9.2□□□□□ -0.94
NUP88-206ENST00000573169 ABCC11Q96J66 1382 aa9.2□□□□□ -0.94
NUP88-206ENST00000573169 PIK3C2GO75747 1445 aa9.2□□□□□ -0.94
NUP88-206ENST00000573169 CDC42BPGQ6DT37 1551 aa9.2□□□□□ -0.94
NUP88-206ENST00000573169 RIOK3O14730 519 aaKnown RBP9.19□□□□□ -0.94
NUP88-206ENST00000573169 PYGBP11216 843 aa9.19□□□□□ -0.94
NUP88-206ENST00000573169 C14orf93Q9H972 538 aaKnown RBP9.19□□□□□ -0.94
NUP88-206ENST00000573169 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.19□□□□□ -0.94
NUP88-206ENST00000573169 TECPR2O15040 1411 aa9.19□□□□□ -0.94
NUP88-206ENST00000573169 YTHDC2Q9H6S0 1430 aaKnown RBP9.19□□□□□ -0.94
NUP88-206ENST00000573169 RGS12O14924 1447 aa9.18□□□□□ -0.94
NUP88-206ENST00000573169 RBM6P78332 1123 aaKnown RBP9.18□□□□□ -0.94
NUP88-206ENST00000573169 SAFB2Q14151 953 aaKnown RBP eCLIP9.18□□□□□ -0.94
NUP88-206ENST00000573169 PXDNQ92626 1479 aa9.18□□□□□ -0.94
NUP88-206ENST00000573169 USP21Q9UK80 565 aa9.18□□□□□ -0.94
NUP88-206ENST00000573169 NPHP3Q7Z494 1330 aa9.17□□□□□ -0.94
NUP88-206ENST00000573169 ERICH6BQ5W0A0 696 aa9.17□□□□□ -0.94
NUP88-206ENST00000573169 PCDH10Q9P2E7 1040 aa9.17□□□□□ -0.94
NUP88-206ENST00000573169 KNDC1Q76NI1 1749 aa9.17□□□□□ -0.94
NUP88-206ENST00000573169 CDK12Q9NYV4 1490 aaPredicted RBP9.16□□□□□ -0.94
NUP88-206ENST00000573169 NRXN1Q9ULB1 1477 aa9.16□□□□□ -0.94
NUP88-206ENST00000573169 PRAM1Q96QH2 718 aa9.16□□□□□ -0.94
NUP88-206ENST00000573169 KDM2AQ9Y2K7 1162 aa9.16□□□□□ -0.94
NUP88-206ENST00000573169 FMN2Q9NZ56 1722 aa9.16□□□□□ -0.94
NUP88-206ENST00000573169 COL22A1Q8NFW1 1626 aaPredicted RBP9.16□□□□□ -0.94
NUP88-206ENST00000573169 MYOM2P54296 1465 aa9.15□□□□□ -0.94
NUP88-206ENST00000573169 KRT28Q7Z3Y7 464 aa9.15□□□□□ -0.94
NUP88-206ENST00000573169 FNBP4Q8N3X1 1017 aaPredicted RBP9.15□□□□□ -0.94
NUP88-206ENST00000573169 BBXQ8WY36 941 aaPredicted RBP9.15□□□□□ -0.94
NUP88-206ENST00000573169 SIRT1Q96EB6 747 aa9.15□□□□□ -0.94
NUP88-206ENST00000573169 FANCIQ9NVI1 1328 aa9.14□□□□□ -0.95
NUP88-206ENST00000573169 CD44P16070 742 aaKnown RBP9.14□□□□□ -0.95
NUP88-206ENST00000573169 ZNF467Q7Z7K2 595 aaPredicted RBP9.14□□□□□ -0.95
NUP88-206ENST00000573169 TRPC5Q9UL62 973 aaPredicted RBP9.14□□□□□ -0.95
NUP88-206ENST00000573169 TRAK1Q9UPV9 953 aa9.14□□□□□ -0.95
NUP88-206ENST00000573169 ATRNO75882 1429 aa9.14□□□□□ -0.95
NUP88-206ENST00000573169 SPATA31A3Q5VYP0 1347 aa9.13□□□□□ -0.95
NUP88-206ENST00000573169 PMFBP1Q8TBY8 1022 aa9.13□□□□□ -0.95
NUP88-206ENST00000573169 CABLES1Q8TDN4 633 aa9.13□□□□□ -0.95
NUP88-206ENST00000573169 DCAF11Q8TEB1 546 aa9.13□□□□□ -0.95
NUP88-206ENST00000573169 HIRIP3Q9BW71 556 aaPredicted RBP9.13□□□□□ -0.95
NUP88-206ENST00000573169 BCL11AQ9H165 835 aa9.13□□□□□ -0.95
NUP88-206ENST00000573169 POGKQ9P215 609 aa9.13□□□□□ -0.95
NUP88-206ENST00000573169 PHF8Q9UPP1 1060 aa9.13□□□□□ -0.95
NUP88-206ENST00000573169 RBM19Q9Y4C8 960 aaKnown RBP9.13□□□□□ -0.95
NUP88-206ENST00000573169 RGPD8O14715 1765 aaPredicted RBP9.13□□□□□ -0.95
NUP88-206ENST00000573169 BCL9LQ86UU0 1499 aa9.13□□□□□ -0.95
NUP88-206ENST00000573169 RNF25Q96BH1 459 aaPredicted RBP9.12□□□□□ -0.95
NUP88-206ENST00000573169 CCDC61Q9Y6R9 512 aa9.12□□□□□ -0.95
NUP88-206ENST00000573169 ADGRB1O14514 1584 aa9.12□□□□□ -0.95
NUP88-206ENST00000573169 MINK1Q8N4C8 1332 aaPredicted RBP9.11□□□□□ -0.95
NUP88-206ENST00000573169 NEFLP07196 543 aa9.11□□□□□ -0.95
NUP88-206ENST00000573169 PLCB2Q00722 1185 aa9.11□□□□□ -0.95
NUP88-206ENST00000573169 LMOD2Q6P5Q4 547 aa9.11□□□□□ -0.95
NUP88-206ENST00000573169 ZRANB1Q9UGI0 708 aa9.11□□□□□ -0.95
NUP88-206ENST00000573169 KIF1AQ12756 1690 aa9.1□□□□□ -0.95
NUP88-206ENST00000573169 PRR36Q9H6K5 1346 aa9.1□□□□□ -0.95
NUP88-206ENST00000573169 USP32Q8NFA0 1604 aa9.1□□□□□ -0.95
NUP88-206ENST00000573169 PSME1Q06323 249 aa9.1□□□□□ -0.95
NUP88-206ENST00000573169 HS6ST3Q8IZP7 471 aa9.1□□□□□ -0.95
NUP88-206ENST00000573169 GJD4Q96KN9 370 aaPredicted RBP9.1□□□□□ -0.95
NUP88-206ENST00000573169 DCBLD2Q96PD2 775 aa9.1□□□□□ -0.95
NUP88-206ENST00000573169 MARF1Q9Y4F3 1742 aaKnown RBP9.1□□□□□ -0.95
NUP88-206ENST00000573169 DLC1Q96QB1 1528 aa9.1□□□□□ -0.95
NUP88-206ENST00000573169 TNS3Q68CZ2 1445 aa9.09□□□□□ -0.95
NUP88-206ENST00000573169 HAP1P54257 671 aaPredicted RBP9.09□□□□□ -0.95
NUP88-206ENST00000573169 DDX10Q13206 875 aaKnown RBP9.09□□□□□ -0.95
NUP88-206ENST00000573169 UNC5CLQ8IV45 518 aa9.09□□□□□ -0.95
NUP88-206ENST00000573169 SGIP1Q9BQI5 828 aa9.09□□□□□ -0.95
NUP88-206ENST00000573169 ATAD2Q6PL18 1390 aa9.09□□□□□ -0.95
NUP88-206ENST00000573169 POTEB2H3BUK9 544 aa9.08□□□□□ -0.96
NUP88-206ENST00000573169 STK25O00506 426 aa9.08□□□□□ -0.96
NUP88-206ENST00000573169 ANP32CO43423 234 aa9.08□□□□□ -0.96
NUP88-206ENST00000573169 SLIT2O94813 1529 aa9.08□□□□□ -0.96
NUP88-206ENST00000573169 RALGAPBQ86X10 1494 aa9.08□□□□□ -0.96
NUP88-206ENST00000573169 GLI3P10071 1580 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms