RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 ZNF687Q8N1G0 1237 aa11.06□□□□□ -0.64
NUP88-205ENST00000572809 MPHOSPH9Q99550 1183 aa11.06□□□□□ -0.64
NUP88-205ENST00000572809 TAOK2Q9UL54 1235 aa11.06□□□□□ -0.64
NUP88-205ENST00000572809 ACIN1Q9UKV3 1341 aaKnown RBP11.06□□□□□ -0.64
NUP88-205ENST00000572809 MICALL2Q8IY33 904 aa11.05□□□□□ -0.64
NUP88-205ENST00000572809 ADAMTS13Q76LX8 1427 aa11.04□□□□□ -0.64
NUP88-205ENST00000572809 DISP3Q9P2K9 1392 aa11.03□□□□□ -0.64
NUP88-205ENST00000572809 SETD5Q9C0A6 1442 aa11.03□□□□□ -0.64
NUP88-205ENST00000572809 ALKQ9UM73 1620 aa11.03□□□□□ -0.64
NUP88-205ENST00000572809 VGFO15240 615 aaPredicted RBP11.03□□□□□ -0.64
NUP88-205ENST00000572809 ZSWIM6Q9HCJ5 1215 aa11.03□□□□□ -0.64
NUP88-205ENST00000572809 AMOTL2Q9Y2J4 779 aa11.03□□□□□ -0.64
NUP88-205ENST00000572809 TRPM2O94759 1503 aa11.03□□□□□ -0.64
NUP88-205ENST00000572809 PIK3R4Q99570 1358 aa11.03□□□□□ -0.64
NUP88-205ENST00000572809 CHD2O14647 1828 aaKnown RBP11.02□□□□□ -0.64
NUP88-205ENST00000572809 XIRP1Q702N8 1843 aaKnown RBP11.02□□□□□ -0.64
NUP88-205ENST00000572809 CLTCL1P53675 1640 aa11.02□□□□□ -0.64
NUP88-205ENST00000572809 GPR153Q6NV75 609 aa11.02□□□□□ -0.65
NUP88-205ENST00000572809 RPGRIP1LQ68CZ1 1315 aa11.02□□□□□ -0.65
NUP88-205ENST00000572809 NKTRP30414 1462 aaKnown RBP11.01□□□□□ -0.65
NUP88-205ENST00000572809 C14orf37Q86TY3 774 aa11.01□□□□□ -0.65
NUP88-205ENST00000572809 MSH6P52701 1360 aa11.01□□□□□ -0.65
NUP88-205ENST00000572809 KIF1BO60333 1816 aa11□□□□□ -0.65
NUP88-205ENST00000572809 NWD1Q149M9 1564 aa11□□□□□ -0.65
NUP88-205ENST00000572809 SLAIN2Q9P270 581 aa11□□□□□ -0.65
NUP88-205ENST00000572809 DIP2AQ14689 1571 aa10.99□□□□□ -0.65
NUP88-205ENST00000572809 RGL3Q3MIN7 710 aa10.99□□□□□ -0.65
NUP88-205ENST00000572809 C19orf44Q9H6X5 657 aa10.99□□□□□ -0.65
NUP88-205ENST00000572809 FAM135BQ49AJ0 1406 aa10.99□□□□□ -0.65
NUP88-205ENST00000572809 NCOA3Q9Y6Q9 1424 aa10.99□□□□□ -0.65
NUP88-205ENST00000572809 CCDC144AA2RUR9 1427 aa10.98□□□□□ -0.65
NUP88-205ENST00000572809 PTPRUQ92729 1446 aa10.98□□□□□ -0.65
NUP88-205ENST00000572809 NEXMIFQ5QGS0 1516 aa10.98□□□□□ -0.65
NUP88-205ENST00000572809 ATF3P18847 181 aa10.97□□□□□ -0.65
NUP88-205ENST00000572809 METP08581 1390 aa10.97□□□□□ -0.65
NUP88-205ENST00000572809 RAB3GAP2Q9H2M9 1393 aa10.97□□□□□ -0.65
NUP88-205ENST00000572809 SETBP1Q9Y6X0 1596 aa10.97□□□□□ -0.65
NUP88-205ENST00000572809 SOX12O15370 315 aa10.96□□□□□ -0.65
NUP88-205ENST00000572809 HRCP23327 699 aa10.96□□□□□ -0.65
NUP88-205ENST00000572809 ARSIQ5FYB1 569 aa10.96□□□□□ -0.65
NUP88-205ENST00000572809 CADPS2Q86UW7 1296 aa10.96□□□□□ -0.65
NUP88-205ENST00000572809 HS6ST3Q8IZP7 471 aa10.96□□□□□ -0.65
NUP88-205ENST00000572809 MS4A4AQ96JQ5 239 aa10.96□□□□□ -0.65
NUP88-205ENST00000572809 NRXN3Q9Y4C0 1643 aa10.95□□□□□ -0.66
NUP88-205ENST00000572809 ANKRD13DQ6ZTN6 518 aa10.95□□□□□ -0.66
NUP88-205ENST00000572809 ILDR2Q71H61 639 aa10.95□□□□□ -0.66
NUP88-205ENST00000572809 RIOK3O14730 519 aaKnown RBP10.94□□□□□ -0.66
NUP88-205ENST00000572809 PTGER2P43116 358 aa10.94□□□□□ -0.66
NUP88-205ENST00000572809 ADGRF5Q8IZF2 1346 aa10.93□□□□□ -0.66
NUP88-205ENST00000572809 PHF8Q9UPP1 1060 aa10.93□□□□□ -0.66
NUP88-205ENST00000572809 SPATA31E1Q6ZUB1 1445 aa10.92□□□□□ -0.66
NUP88-205ENST00000572809 ANKRD30BQ9BXX2 1392 aa10.91□□□□□ -0.66
NUP88-205ENST00000572809 KHSRPQ92945 711 aaKnown RBP eCLIP10.91□□□□□ -0.66
NUP88-205ENST00000572809 RNF25Q96BH1 459 aaPredicted RBP10.91□□□□□ -0.66
NUP88-205ENST00000572809 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.91□□□□□ -0.66
NUP88-205ENST00000572809 ROBO1Q9Y6N7 1651 aa10.91□□□□□ -0.66
NUP88-205ENST00000572809 PPLO60437 1756 aa10.9□□□□□ -0.66
NUP88-205ENST00000572809 XRN1Q8IZH2 1706 aaKnown RBP10.89□□□□□ -0.67
NUP88-205ENST00000572809 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.89□□□□□ -0.67
NUP88-205ENST00000572809 ZNF316A6NFI3 1004 aaPredicted RBP10.89□□□□□ -0.67
NUP88-205ENST00000572809 ZFP91Q96JP5 570 aaPredicted RBP10.89□□□□□ -0.67
NUP88-205ENST00000572809 KDM2AQ9Y2K7 1162 aa10.89□□□□□ -0.67
NUP88-205ENST00000572809 DCCP43146 1447 aa10.88□□□□□ -0.67
NUP88-205ENST00000572809 MED1Q15648 1581 aaPredicted RBP10.88□□□□□ -0.67
NUP88-205ENST00000572809 TMEM132EQ6IEE7 984 aa10.88□□□□□ -0.67
NUP88-205ENST00000572809 BRINP3Q76B58 766 aa10.88□□□□□ -0.67
NUP88-205ENST00000572809 TSHZ2Q9NRE2 1034 aa10.88□□□□□ -0.67
NUP88-205ENST00000572809 STK26Q9P289 416 aa10.88□□□□□ -0.67
NUP88-205ENST00000572809 ROBO2Q9HCK4 1378 aa10.88□□□□□ -0.67
NUP88-205ENST00000572809 C14orf93Q9H972 538 aaKnown RBP10.87□□□□□ -0.67
NUP88-205ENST00000572809 ADGRL3Q9HAR2 1447 aa10.86□□□□□ -0.67
NUP88-205ENST00000572809 SETD1AO15047 1707 aaKnown RBP10.86□□□□□ -0.67
NUP88-205ENST00000572809 MST1RQ04912 1400 aa10.85□□□□□ -0.67
NUP88-205ENST00000572809 PTCH1Q13635 1447 aa10.85□□□□□ -0.67
NUP88-205ENST00000572809 PHLPP1O60346 1717 aa10.85□□□□□ -0.67
NUP88-205ENST00000572809 SOCS7O14512 581 aa10.85□□□□□ -0.67
NUP88-205ENST00000572809 LSM11P83369 360 aaKnown RBP eCLIP10.85□□□□□ -0.67
NUP88-205ENST00000572809 CFAP70Q5T0N1 1121 aa10.85□□□□□ -0.67
NUP88-205ENST00000572809 WAPLQ7Z5K2 1190 aa10.85□□□□□ -0.67
NUP88-205ENST00000572809 DCAF11Q8TEB1 546 aa10.85□□□□□ -0.67
NUP88-205ENST00000572809 JCADQ9P266 1359 aa10.85□□□□□ -0.67
NUP88-205ENST00000572809 STK25O00506 426 aa10.84□□□□□ -0.67
NUP88-205ENST00000572809 SIRT1Q96EB6 747 aa10.84□□□□□ -0.67
NUP88-205ENST00000572809 STAC3Q96MF2 364 aa10.84□□□□□ -0.67
NUP88-205ENST00000572809 LRPPRCP42704 1394 aaKnown RBP10.84□□□□□ -0.67
NUP88-205ENST00000572809 ABCC11Q96J66 1382 aa10.84□□□□□ -0.67
NUP88-205ENST00000572809 IFT172Q9UG01 1749 aa10.84□□□□□ -0.67
NUP88-205ENST00000572809 PIK3C2GO75747 1445 aa10.84□□□□□ -0.67
NUP88-205ENST00000572809 PRAG1Q86YV5 1406 aa10.84□□□□□ -0.67
NUP88-205ENST00000572809 DHX57Q6P158 1386 aaKnown RBP10.83□□□□□ -0.68
NUP88-205ENST00000572809 LRRC59Q96AG4 307 aaKnown RBP10.83□□□□□ -0.68
NUP88-205ENST00000572809 ORAI2Q96SN7 254 aa10.83□□□□□ -0.68
NUP88-205ENST00000572809 RGS17Q9UGC6 210 aaPredicted RBP10.83□□□□□ -0.68
NUP88-205ENST00000572809 DDX17Q92841 729 aaKnown RBP10.82□□□□□ -0.68
NUP88-205ENST00000572809 SPATA31A6Q5VVP1 1343 aa10.82□□□□□ -0.68
NUP88-205ENST00000572809 C1orf167Q5SNV9 1468 aa10.81□□□□□ -0.68
NUP88-205ENST00000572809 NALCNQ8IZF0 1738 aa10.81□□□□□ -0.68
NUP88-205ENST00000572809 AHDC1Q5TGY3 1603 aaPredicted RBP10.81□□□□□ -0.68
NUP88-205ENST00000572809 ESCO1Q5FWF5 840 aa10.81□□□□□ -0.68
NUP88-205ENST00000572809 YTHDC2Q9H6S0 1430 aaKnown RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms