RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 MYH16Q9H6N6 1097 aa11.25□□□□□ -0.61
LINC00558-201ENST00000569422 NEFMP07197 916 aa11.24□□□□□ -0.61
LINC00558-201ENST00000569422 HMOX1P09601 288 aa11.24□□□□□ -0.61
LINC00558-201ENST00000569422 RIPK4P57078 832 aa11.24□□□□□ -0.61
LINC00558-201ENST00000569422 EXOSC9Q06265 439 aaKnown RBP11.24□□□□□ -0.61
LINC00558-201ENST00000569422 FTSJ3Q8IY81 847 aaKnown RBP11.24□□□□□ -0.61
LINC00558-201ENST00000569422 NGEFQ8N5V2 710 aa11.24□□□□□ -0.61
LINC00558-201ENST00000569422 PPLO60437 1756 aa11.24□□□□□ -0.61
LINC00558-201ENST00000569422 NEXMIFQ5QGS0 1516 aa11.24□□□□□ -0.61
LINC00558-201ENST00000569422 PDE3AQ14432 1141 aa11.24□□□□□ -0.61
LINC00558-201ENST00000569422 C8orf34Q49A92 452 aa11.24□□□□□ -0.61
LINC00558-201ENST00000569422 WDR63Q8IWG1 891 aa11.24□□□□□ -0.61
LINC00558-201ENST00000569422 SMC4Q9NTJ3 1288 aa11.24□□□□□ -0.61
LINC00558-201ENST00000569422 DIAPH1O60610 1272 aaKnown RBP11.23□□□□□ -0.61
LINC00558-201ENST00000569422 TMPOP42166 694 aaKnown RBP11.23□□□□□ -0.61
LINC00558-201ENST00000569422 PCDHB15Q9Y5E8 787 aa11.23□□□□□ -0.61
LINC00558-201ENST00000569422 YTHDC2Q9H6S0 1430 aaKnown RBP11.23□□□□□ -0.61
LINC00558-201ENST00000569422 ZRANB1Q9UGI0 708 aa11.23□□□□□ -0.61
LINC00558-201ENST00000569422 PPP6R1Q9UPN7 881 aa11.23□□□□□ -0.61
LINC00558-201ENST00000569422 THUMPD2Q9BTF0 503 aaKnown RBP11.22□□□□□ -0.61
LINC00558-201ENST00000569422 ELL2O00472 640 aaPredicted RBP11.21□□□□□ -0.61
LINC00558-201ENST00000569422 SOX12O15370 315 aa11.21□□□□□ -0.61
LINC00558-201ENST00000569422 ATAD2Q6PL18 1390 aa11.21□□□□□ -0.62
LINC00558-201ENST00000569422 PIK3C2BO00750 1634 aa11.21□□□□□ -0.62
LINC00558-201ENST00000569422 MYO3AQ8NEV4 1616 aa11.21□□□□□ -0.62
LINC00558-201ENST00000569422 ARHGAP31Q2M1Z3 1444 aa11.21□□□□□ -0.62
LINC00558-201ENST00000569422 AAMPQ13685 434 aa11.2□□□□□ -0.62
LINC00558-201ENST00000569422 ITPRIPQ8IWB1 547 aa11.2□□□□□ -0.62
LINC00558-201ENST00000569422 TRIM35Q9UPQ4 493 aa11.2□□□□□ -0.62
LINC00558-201ENST00000569422 EMILIN1Q9Y6C2 1016 aa11.2□□□□□ -0.62
LINC00558-201ENST00000569422 ABCC11Q96J66 1382 aa11.2□□□□□ -0.62
LINC00558-201ENST00000569422 PRKAR2BP31323 418 aa11.2□□□□□ -0.62
LINC00558-201ENST00000569422 NME9Q86XW9 330 aa11.2□□□□□ -0.62
LINC00558-201ENST00000569422 DDRGK1Q96HY6 314 aa11.2□□□□□ -0.62
LINC00558-201ENST00000569422 PUS7Q96PZ0 661 aaKnown RBP11.2□□□□□ -0.62
LINC00558-201ENST00000569422 SEC24BO95487 1268 aa11.2□□□□□ -0.62
LINC00558-201ENST00000569422 RRS1Q15050 365 aaKnown RBP11.19□□□□□ -0.62
LINC00558-201ENST00000569422 ZKSCAN2Q63HK3 967 aa11.19□□□□□ -0.62
LINC00558-201ENST00000569422 SSH1Q8WYL5 1049 aa11.19□□□□□ -0.62
LINC00558-201ENST00000569422 PLEKHF1Q96S99 279 aa11.19□□□□□ -0.62
LINC00558-201ENST00000569422 DZIP1LQ8IYY4 767 aaKnown RBP11.19□□□□□ -0.62
LINC00558-201ENST00000569422 CCDC27Q2M243 656 aa11.18□□□□□ -0.62
LINC00558-201ENST00000569422 TSPOAP1O95153 1857 aa11.18□□□□□ -0.62
LINC00558-201ENST00000569422 NSD2O96028 1365 aa11.18□□□□□ -0.62
LINC00558-201ENST00000569422 NOB1Q9ULX3 412 aaKnown RBP11.18□□□□□ -0.62
LINC00558-201ENST00000569422 IGSF3O75054 1194 aa11.18□□□□□ -0.62
LINC00558-201ENST00000569422 POLKQ9UBT6 870 aa11.18□□□□□ -0.62
LINC00558-201ENST00000569422 PDZRN3Q9UPQ7 1066 aa11.18□□□□□ -0.62
LINC00558-201ENST00000569422 PTPRMP28827 1452 aa11.17□□□□□ -0.62
LINC00558-201ENST00000569422 PHACTR3Q96KR7 559 aa11.17□□□□□ -0.62
LINC00558-201ENST00000569422 PMFBP1Q8TBY8 1022 aa11.17□□□□□ -0.62
LINC00558-201ENST00000569422 TRIM27P14373 513 aa11.16□□□□□ -0.62
LINC00558-201ENST00000569422 MVPQ14764 893 aaKnown RBP11.16□□□□□ -0.62
LINC00558-201ENST00000569422 ARHGEF28Q8N1W1 1705 aaKnown RBP11.16□□□□□ -0.62
LINC00558-201ENST00000569422 RIMS2Q9UQ26 1411 aa11.16□□□□□ -0.62
LINC00558-201ENST00000569422 RICTORQ6R327 1708 aa11.16□□□□□ -0.62
LINC00558-201ENST00000569422 SHPRHQ149N8 1683 aa11.16□□□□□ -0.62
LINC00558-201ENST00000569422 IQSEC2Q5JU85 1478 aa11.16□□□□□ -0.62
LINC00558-201ENST00000569422 CEBPAP49715 358 aaPredicted RBP11.16□□□□□ -0.62
LINC00558-201ENST00000569422 RWDD1Q9H446 243 aaPredicted RBP11.16□□□□□ -0.62
LINC00558-201ENST00000569422 ZFYVE9O95405 1425 aa11.15□□□□□ -0.62
LINC00558-201ENST00000569422 WASLO00401 505 aaPredicted RBP11.15□□□□□ -0.62
LINC00558-201ENST00000569422 ADRA2BP18089 450 aa11.15□□□□□ -0.62
LINC00558-201ENST00000569422 NUDT16Q96DE0 195 aaKnown RBP11.15□□□□□ -0.62
LINC00558-201ENST00000569422 METP08581 1390 aa11.15□□□□□ -0.62
LINC00558-201ENST00000569422 RSPH6AQ9H0K4 717 aa11.14□□□□□ -0.63
LINC00558-201ENST00000569422 MYO5BQ9ULV0 1848 aa11.14□□□□□ -0.63
LINC00558-201ENST00000569422 ZC3H13Q5T200 1668 aaKnown RBP11.14□□□□□ -0.63
LINC00558-201ENST00000569422 DCTN1Q14203 1278 aa11.14□□□□□ -0.63
LINC00558-201ENST00000569422 TMEM57Q8N5G2 664 aa11.14□□□□□ -0.63
LINC00558-201ENST00000569422 SLC26A8Q96RN1 970 aa11.14□□□□□ -0.63
LINC00558-201ENST00000569422 CD163L1Q9NR16 1453 aa11.14□□□□□ -0.63
LINC00558-201ENST00000569422 NINLQ9Y2I6 1382 aa11.14□□□□□ -0.63
LINC00558-201ENST00000569422 TMEM131LA2VDJ0 1609 aa11.14□□□□□ -0.63
LINC00558-201ENST00000569422 ALKQ9UM73 1620 aa11.14□□□□□ -0.63
LINC00558-201ENST00000569422 FAM83GA6ND36 823 aa11.13□□□□□ -0.63
LINC00558-201ENST00000569422 HSP90B1P14625 803 aaKnown RBP11.13□□□□□ -0.63
LINC00558-201ENST00000569422 ATF7IPQ6VMQ6 1270 aa11.13□□□□□ -0.63
LINC00558-201ENST00000569422 COG3Q96JB2 828 aa11.13□□□□□ -0.63
LINC00558-201ENST00000569422 A0A0U1RQG5 324 aaPredicted RBP11.13□□□□□ -0.63
LINC00558-201ENST00000569422 SPRYD3Q8NCJ5 442 aa11.13□□□□□ -0.63
LINC00558-201ENST00000569422 PREX1Q8TCU6 1659 aa11.13□□□□□ -0.63
LINC00558-201ENST00000569422 FCHSD2O94868 740 aa11.12□□□□□ -0.63
LINC00558-201ENST00000569422 PNNQ9H307 717 aaKnown RBP11.12□□□□□ -0.63
LINC00558-201ENST00000569422 ZMYM3Q14202 1370 aa11.12□□□□□ -0.63
LINC00558-201ENST00000569422 PAXIP1Q6ZW49 1069 aaPredicted RBP11.12□□□□□ -0.63
LINC00558-201ENST00000569422 SLKQ9H2G2 1235 aaPredicted RBP11.12□□□□□ -0.63
LINC00558-201ENST00000569422 C1orf115Q9H7X2 142 aa11.12□□□□□ -0.63
LINC00558-201ENST00000569422 A2ML1A8K2U0 1454 aa11.12□□□□□ -0.63
LINC00558-201ENST00000569422 TSPYL6Q8N831 410 aa11.12□□□□□ -0.63
LINC00558-201ENST00000569422 PPIP5K1Q6PFW1 1433 aa11.11□□□□□ -0.63
LINC00558-201ENST00000569422 CCDC61Q9Y6R9 512 aa11.11□□□□□ -0.63
LINC00558-201ENST00000569422 NFKBIBQ15653 356 aa11.11□□□□□ -0.63
LINC00558-201ENST00000569422 ARHGEF40Q8TER5 1519 aa11.11□□□□□ -0.63
LINC00558-201ENST00000569422 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.1□□□□□ -0.63
LINC00558-201ENST00000569422 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.1□□□□□ -0.63
LINC00558-201ENST00000569422 DDX19BQ9UMR2 479 aa11.1□□□□□ -0.63
LINC00558-201ENST00000569422 UPF2Q9HAU5 1272 aaKnown RBP11.1□□□□□ -0.63
LINC00558-201ENST00000569422 MFAP1P55081 439 aaKnown RBP11.09□□□□□ -0.63
LINC00558-201ENST00000569422 NFE2L2Q16236 605 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms