RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-225ENST00000569245 ITSN1Q15811 1721 aa20.46■□□□□ 0.87
COMMD4-225ENST00000569245 RALGAPBQ86X10 1494 aa20.45■□□□□ 0.86
COMMD4-225ENST00000569245 UNC5CLQ8IV45 518 aa20.45■□□□□ 0.86
COMMD4-225ENST00000569245 ABTB2Q8N961 1025 aa20.44■□□□□ 0.86
COMMD4-225ENST00000569245 BCL9LQ86UU0 1499 aa20.43■□□□□ 0.86
COMMD4-225ENST00000569245 FAM83GA6ND36 823 aa20.43■□□□□ 0.86
COMMD4-225ENST00000569245 TRPM3Q9HCF6 1732 aaPredicted RBP20.42■□□□□ 0.86
COMMD4-225ENST00000569245 ATRNO75882 1429 aa20.42■□□□□ 0.86
COMMD4-225ENST00000569245 GJD4Q96KN9 370 aaPredicted RBP20.41■□□□□ 0.86
COMMD4-225ENST00000569245 CCDC9Q9Y3X0 531 aaKnown RBP20.41■□□□□ 0.86
COMMD4-225ENST00000569245 CDK12Q9NYV4 1490 aaPredicted RBP20.41■□□□□ 0.86
COMMD4-225ENST00000569245 TOPAZ1Q8N9V7 1692 aa20.4■□□□□ 0.86
COMMD4-225ENST00000569245 SLIT2O94813 1529 aa20.38■□□□□ 0.85
COMMD4-225ENST00000569245 RGS12O14924 1447 aa20.38■□□□□ 0.85
COMMD4-225ENST00000569245 ATAD2Q6PL18 1390 aa20.38■□□□□ 0.85
COMMD4-225ENST00000569245 PRDM11Q9NQV5 511 aa20.38■□□□□ 0.85
COMMD4-225ENST00000569245 BTG4Q9NY30 223 aa20.38■□□□□ 0.85
COMMD4-225ENST00000569245 MARF1Q9Y4F3 1742 aaKnown RBP20.38■□□□□ 0.85
COMMD4-225ENST00000569245 ALS2Q96Q42 1657 aa20.38■□□□□ 0.85
COMMD4-225ENST00000569245 SBNO2Q9Y2G9 1366 aa20.36■□□□□ 0.85
COMMD4-225ENST00000569245 ST20-MTHFSA0A0A6YYL1 179 aa20.36■□□□□ 0.85
COMMD4-225ENST00000569245 ZC3H6P61129 1189 aaKnown RBP20.36■□□□□ 0.85
COMMD4-225ENST00000569245 NLRP13Q86W25 1043 aa20.36■□□□□ 0.85
COMMD4-225ENST00000569245 TMC1Q8TDI8 760 aa20.36■□□□□ 0.85
COMMD4-225ENST00000569245 ZNF692Q9BU19 519 aaPredicted RBP20.36■□□□□ 0.85
COMMD4-225ENST00000569245 VPS72Q15906 364 aa20.35■□□□□ 0.85
COMMD4-225ENST00000569245 BRD4O60885 1362 aaPredicted RBP20.34■□□□□ 0.85
COMMD4-225ENST00000569245 NLRP6P59044 892 aa20.34■□□□□ 0.85
COMMD4-225ENST00000569245 USP6P35125 1406 aa20.34■□□□□ 0.85
COMMD4-225ENST00000569245 KIAA0232Q92628 1395 aa20.34■□□□□ 0.85
COMMD4-225ENST00000569245 CHRNA2Q15822 529 aa20.33■□□□□ 0.85
COMMD4-225ENST00000569245 ABCA3Q99758 1704 aa20.33■□□□□ 0.84
COMMD4-225ENST00000569245 UPF1Q92900 1129 aaKnown RBP eCLIP20.32■□□□□ 0.847e-14■■■■■ 92.7
COMMD4-225ENST00000569245 SLC24A1O60721 1099 aa20.31■□□□□ 0.84
COMMD4-225ENST00000569245 GCP02774 474 aa20.3■□□□□ 0.84
COMMD4-225ENST00000569245 KTN1Q86UP2 1357 aaKnown RBP20.3■□□□□ 0.84
COMMD4-225ENST00000569245 TTC21BQ7Z4L5 1316 aa20.29■□□□□ 0.84
COMMD4-225ENST00000569245 A0A0G2JS52 829 aa20.29■□□□□ 0.84
COMMD4-225ENST00000569245 ZBTB7CA1YPR0 619 aa20.29■□□□□ 0.84
COMMD4-225ENST00000569245 MYT1Q01538 1121 aa20.29■□□□□ 0.84
COMMD4-225ENST00000569245 TESK2Q96S53 571 aa20.29■□□□□ 0.84
COMMD4-225ENST00000569245 USP47Q96K76 1375 aa20.29■□□□□ 0.84
COMMD4-225ENST00000569245 USP19O94966 1318 aa20.28■□□□□ 0.84
COMMD4-225ENST00000569245 EVA1CP58658 441 aa20.28■□□□□ 0.84
COMMD4-225ENST00000569245 HDGFL2Q7Z4V5 671 aaPredicted RBP20.28■□□□□ 0.84
COMMD4-225ENST00000569245 SLC12A5Q9H2X9 1139 aa20.28■□□□□ 0.84
COMMD4-225ENST00000569245 STRN4Q9NRL3 753 aa20.28■□□□□ 0.84
COMMD4-225ENST00000569245 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.27■□□□□ 0.84
COMMD4-225ENST00000569245 PLCH1Q4KWH8 1693 aa20.27■□□□□ 0.84
COMMD4-225ENST00000569245 PUS7Q96PZ0 661 aaKnown RBP20.27■□□□□ 0.84
COMMD4-225ENST00000569245 COL14A1Q05707 1796 aaKnown RBP20.26■□□□□ 0.83
COMMD4-225ENST00000569245 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.26■□□□□ 0.83
COMMD4-225ENST00000569245 SEPT12Q8IYM1 358 aa20.26■□□□□ 0.83
COMMD4-225ENST00000569245 TERF2IPQ9NYB0 399 aa20.26■□□□□ 0.83
COMMD4-225ENST00000569245 CPSF1Q10570 1443 aaKnown RBP20.26■□□□□ 0.83
COMMD4-225ENST00000569245 SSH2Q76I76 1423 aa20.26■□□□□ 0.83
COMMD4-225ENST00000569245 TTC21AQ8NDW8 1320 aa20.26■□□□□ 0.83
COMMD4-225ENST00000569245 NWD2Q9ULI1 1742 aa20.25■□□□□ 0.83
COMMD4-225ENST00000569245 TMF1P82094 1093 aa20.25■□□□□ 0.83
COMMD4-225ENST00000569245 FAM98CQ17RN3 349 aaKnown RBP20.25■□□□□ 0.83
COMMD4-225ENST00000569245 SOX12O15370 315 aa20.24■□□□□ 0.83
COMMD4-225ENST00000569245 GLI3P10071 1580 aa20.24■□□□□ 0.83
COMMD4-225ENST00000569245 CRYBG1Q9Y4K1 1723 aa20.24■□□□□ 0.83
COMMD4-225ENST00000569245 CPDO75976 1380 aa20.23■□□□□ 0.83
COMMD4-225ENST00000569245 PHRF1Q9P1Y6 1649 aaKnown RBP20.23■□□□□ 0.83
COMMD4-225ENST00000569245 SPATA31A5Q5VU36 1347 aa20.23■□□□□ 0.83
COMMD4-225ENST00000569245 SPATA31A7Q8IWB4 1347 aa20.23■□□□□ 0.83
COMMD4-225ENST00000569245 ONECUT3O60422 494 aaPredicted RBP20.22■□□□□ 0.83
COMMD4-225ENST00000569245 KCNH5Q8NCM2 988 aa20.21■□□□□ 0.83
COMMD4-225ENST00000569245 USP35Q9P2H5 1018 aa20.21■□□□□ 0.83
COMMD4-225ENST00000569245 NRKQ7Z2Y5 1582 aa20.21■□□□□ 0.83
COMMD4-225ENST00000569245 CDCA8Q53HL2 280 aa20.19■□□□□ 0.82
COMMD4-225ENST00000569245 KRT27Q7Z3Y8 459 aa20.19■□□□□ 0.82
COMMD4-225ENST00000569245 NME9Q86XW9 330 aa20.19■□□□□ 0.82
COMMD4-225ENST00000569245 ZRANB1Q9UGI0 708 aa20.19■□□□□ 0.82
COMMD4-225ENST00000569245 LARP1Q6PKG0 1096 aaKnown RBP20.18■□□□□ 0.82
COMMD4-225ENST00000569245 SPATA31A1Q5TZJ5 1347 aa20.18■□□□□ 0.82
COMMD4-225ENST00000569245 NRAPQ86VF7 1730 aa20.18■□□□□ 0.82
COMMD4-225ENST00000569245 A0A1W2PP64 1363 aa20.18■□□□□ 0.82
COMMD4-225ENST00000569245 NINLQ9Y2I6 1382 aa20.18■□□□□ 0.82
COMMD4-225ENST00000569245 CD163L1Q9NR16 1453 aa20.18■□□□□ 0.82
COMMD4-225ENST00000569245 PIK3C2AO00443 1686 aa20.16■□□□□ 0.82
COMMD4-225ENST00000569245 AKAP12Q02952 1782 aa20.16■□□□□ 0.82
COMMD4-225ENST00000569245 SLIT3O75094 1523 aa20.16■□□□□ 0.82
COMMD4-225ENST00000569245 EP400Q96L91 3159 aa20.15■□□□□ 0.82
COMMD4-225ENST00000569245 AATKQ6ZMQ8 1374 aa20.15■□□□□ 0.82
COMMD4-225ENST00000569245 EDC4Q6P2E9 1401 aaKnown RBP20.15■□□□□ 0.82
COMMD4-225ENST00000569245 CAMTA1Q9Y6Y1 1673 aa20.15■□□□□ 0.82
COMMD4-225ENST00000569245 ARHGEF25Q86VW2 580 aa20.14■□□□□ 0.81
COMMD4-225ENST00000569245 CCDC125Q86Z20 511 aa20.14■□□□□ 0.81
COMMD4-225ENST00000569245 USP31Q70CQ4 1352 aa20.13■□□□□ 0.81
COMMD4-225ENST00000569245 TCP11L2Q8N4U5 519 aa20.13■□□□□ 0.81
COMMD4-225ENST00000569245 AXIN2Q9Y2T1 843 aa20.12■□□□□ 0.81
COMMD4-225ENST00000569245 CSB-PGBD3P0DP91 1061 aa20.11■□□□□ 0.81
COMMD4-225ENST00000569245 EIF4G2P78344 907 aaKnown RBP eCLIP20.11■□□□□ 0.81
COMMD4-225ENST00000569245 TOM1L2Q6ZVM7 507 aa20.11■□□□□ 0.81
COMMD4-225ENST00000569245 POLR3GLQ9BT43 218 aa20.11■□□□□ 0.81
COMMD4-225ENST00000569245 COL5A2P05997 1499 aaPredicted RBP20.11■□□□□ 0.81
COMMD4-225ENST00000569245 MON2Q7Z3U7 1717 aa20.1■□□□□ 0.81
COMMD4-225ENST00000569245 ANKRD36BQ8N2N9 1353 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms