RNA–Protein interactions for RNA: ENST00000568755.1

VPS39-211, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-211ENST00000568755 STAC3Q96MF2 364 aa14.84□□□□□ -0.03
VPS39-211ENST00000568755 ZRANB1Q9UGI0 708 aa14.84□□□□□ -0.03
VPS39-211ENST00000568755 ATP7BP35670 1465 aa14.83□□□□□ -0.03
VPS39-211ENST00000568755 WASLO00401 505 aaPredicted RBP14.83□□□□□ -0.04
VPS39-211ENST00000568755 PLEKHG5O94827 1062 aa14.83□□□□□ -0.04
VPS39-211ENST00000568755 HRCP23327 699 aa14.83□□□□□ -0.04
VPS39-211ENST00000568755 KDM2AQ9Y2K7 1162 aa14.83□□□□□ -0.04
VPS39-211ENST00000568755 PHRF1Q9P1Y6 1649 aaKnown RBP14.83□□□□□ -0.04
VPS39-211ENST00000568755 GPRASP1Q5JY77 1395 aa14.83□□□□□ -0.04
VPS39-211ENST00000568755 THSD7AQ9UPZ6 1657 aa14.81□□□□□ -0.04
VPS39-211ENST00000568755 CCDC9Q9Y3X0 531 aaKnown RBP14.8□□□□□ -0.04
VPS39-211ENST00000568755 RGPD1P0DJD0 1748 aa14.8□□□□□ -0.04
VPS39-211ENST00000568755 KRT27Q7Z3Y8 459 aa14.79□□□□□ -0.04
VPS39-211ENST00000568755 DEFB132Q7Z7B7 95 aa14.79□□□□□ -0.04
VPS39-211ENST00000568755 BTG4Q9NY30 223 aa14.79□□□□□ -0.04
VPS39-211ENST00000568755 TNS1Q9HBL0 1735 aaKnown RBP14.78□□□□□ -0.04
VPS39-211ENST00000568755 NGDNQ8NEJ9 315 aaKnown RBP14.77□□□□□ -0.05
VPS39-211ENST00000568755 FAM98CQ17RN3 349 aaKnown RBP14.76□□□□□ -0.05
VPS39-211ENST00000568755 NUDT16Q96DE0 195 aaKnown RBP14.76□□□□□ -0.05
VPS39-211ENST00000568755 LRP5O75197 1615 aa14.76□□□□□ -0.05
VPS39-211ENST00000568755 SPATA31A5Q5VU36 1347 aa14.75□□□□□ -0.05
VPS39-211ENST00000568755 SPATA31A7Q8IWB4 1347 aa14.75□□□□□ -0.05
VPS39-211ENST00000568755 SF3B2Q13435 895 aaKnown RBP14.75□□□□□ -0.05
VPS39-211ENST00000568755 NRKQ7Z2Y5 1582 aa14.75□□□□□ -0.05
VPS39-211ENST00000568755 POLR3AO14802 1390 aaPredicted RBP14.74□□□□□ -0.05
VPS39-211ENST00000568755 PAK3O75914 559 aaPredicted RBP14.74□□□□□ -0.05
VPS39-211ENST00000568755 CDK19Q9BWU1 502 aa14.73□□□□□ -0.05
VPS39-211ENST00000568755 PRDM11Q9NQV5 511 aa14.73□□□□□ -0.05
VPS39-211ENST00000568755 QRICH2Q9H0J4 1663 aa14.73□□□□□ -0.05
VPS39-211ENST00000568755 KIAA0232Q92628 1395 aa14.73□□□□□ -0.05
VPS39-211ENST00000568755 LMO7Q8WWI1 1683 aa14.72□□□□□ -0.05
VPS39-211ENST00000568755 A0A0G2JS52 829 aa14.72□□□□□ -0.05
VPS39-211ENST00000568755 MYT1Q01538 1121 aa14.72□□□□□ -0.05
VPS39-211ENST00000568755 ACEP12821 1306 aa14.7□□□□□ -0.06
VPS39-211ENST00000568755 SPATA31A1Q5TZJ5 1347 aa14.7□□□□□ -0.06
VPS39-211ENST00000568755 DISP2A7MBM2 1401 aa14.7□□□□□ -0.06
VPS39-211ENST00000568755 PLEKHG3A1L390 1219 aa14.7□□□□□ -0.06
VPS39-211ENST00000568755 CCDC61Q9Y6R9 512 aa14.7□□□□□ -0.06
VPS39-211ENST00000568755 BAG6P46379 1132 aa14.69□□□□□ -0.06
VPS39-211ENST00000568755 NBPF1Q3BBV0 1214 aa14.69□□□□□ -0.06
VPS39-211ENST00000568755 CAMTA1Q9Y6Y1 1673 aa14.68□□□□□ -0.06
VPS39-211ENST00000568755 CHRNA2Q15822 529 aa14.68□□□□□ -0.06
VPS39-211ENST00000568755 NBPF8Q3BBV2 869 aa14.68□□□□□ -0.06
VPS39-211ENST00000568755 FAM182BQ5T319 152 aa14.68□□□□□ -0.06
VPS39-211ENST00000568755 USP19O94966 1318 aa14.67□□□□□ -0.06
VPS39-211ENST00000568755 ZC3H6P61129 1189 aaKnown RBP14.67□□□□□ -0.06
VPS39-211ENST00000568755 NUTM2GQ5VZR2 741 aa14.67□□□□□ -0.06
VPS39-211ENST00000568755 RREB1Q92766 1687 aa14.67□□□□□ -0.06
VPS39-211ENST00000568755 SSH2Q76I76 1423 aa14.66□□□□□ -0.06
VPS39-211ENST00000568755 PARP4Q9UKK3 1724 aaKnown RBP14.66□□□□□ -0.06
VPS39-211ENST00000568755 CPDO75976 1380 aa14.66□□□□□ -0.06
VPS39-211ENST00000568755 PPIP5K1Q6PFW1 1433 aa14.66□□□□□ -0.06
VPS39-211ENST00000568755 EN1Q05925 392 aaPredicted RBP14.65□□□□□ -0.06
VPS39-211ENST00000568755 STRN4Q9NRL3 753 aa14.65□□□□□ -0.06
VPS39-211ENST00000568755 TRPM1Q7Z4N2 1603 aa14.65□□□□□ -0.06
VPS39-211ENST00000568755 CENPJQ9HC77 1338 aaPredicted RBP14.65□□□□□ -0.06
VPS39-211ENST00000568755 SBF2Q86WG5 1849 aa14.64□□□□□ -0.07
VPS39-211ENST00000568755 ABTB2Q8N961 1025 aa14.64□□□□□ -0.07
VPS39-211ENST00000568755 AKAP12Q02952 1782 aa14.64□□□□□ -0.07
VPS39-211ENST00000568755 WNK3Q9BYP7 1800 aa14.64□□□□□ -0.07
VPS39-211ENST00000568755 NUP188Q5SRE5 1749 aa14.63□□□□□ -0.07
VPS39-211ENST00000568755 COL18A1P39060 1754 aa14.63□□□□□ -0.07
VPS39-211ENST00000568755 PIK3C2AO00443 1686 aa14.63□□□□□ -0.07
VPS39-211ENST00000568755 PSDA5PKW4 1024 aaPredicted RBP14.63□□□□□ -0.07
VPS39-211ENST00000568755 BARGINQ6ZT62 677 aa14.63□□□□□ -0.07
VPS39-211ENST00000568755 RGPD5Q99666 1765 aa14.62□□□□□ -0.07
VPS39-211ENST00000568755 BRD4O60885 1362 aaPredicted RBP14.62□□□□□ -0.07
VPS39-211ENST00000568755 SLIT3O75094 1523 aa14.62□□□□□ -0.07
VPS39-211ENST00000568755 CABP2Q9NPB3 220 aa14.62□□□□□ -0.07
VPS39-211ENST00000568755 COL5A2P05997 1499 aaPredicted RBP14.62□□□□□ -0.07
VPS39-211ENST00000568755 USP6P35125 1406 aa14.61□□□□□ -0.07
VPS39-211ENST00000568755 SRPK2P78362 688 aaKnown RBP14.61□□□□□ -0.07
VPS39-211ENST00000568755 LARP1Q6PKG0 1096 aaKnown RBP14.61□□□□□ -0.07
VPS39-211ENST00000568755 FAM196AQ6ZSG2 479 aa14.61□□□□□ -0.07
VPS39-211ENST00000568755 CNKSR2Q8WXI2 1034 aa14.61□□□□□ -0.07
VPS39-211ENST00000568755 PEAK1Q9H792 1746 aa14.61□□□□□ -0.07
VPS39-211ENST00000568755 TRIM37O94972 964 aa14.6□□□□□ -0.07
VPS39-211ENST00000568755 EZH2Q15910 746 aaKnown RBP14.6□□□□□ -0.07
VPS39-211ENST00000568755 NLRP13Q86W25 1043 aa14.6□□□□□ -0.07
VPS39-211ENST00000568755 CAMKK2Q96RR4 588 aa14.6□□□□□ -0.07
VPS39-211ENST00000568755 USP35Q9P2H5 1018 aa14.6□□□□□ -0.07
VPS39-211ENST00000568755 LRRC37A3O60309 1634 aa14.59□□□□□ -0.07
VPS39-211ENST00000568755 GCP02774 474 aa14.59□□□□□ -0.07
VPS39-211ENST00000568755 EVA1CP58658 441 aa14.59□□□□□ -0.07
VPS39-211ENST00000568755 TCP11L2Q8N4U5 519 aa14.59□□□□□ -0.07
VPS39-211ENST00000568755 PARD3Q8TEW0 1356 aa14.59□□□□□ -0.07
VPS39-211ENST00000568755 RGPD3A6NKT7 1758 aaPredicted RBP14.58□□□□□ -0.08
VPS39-211ENST00000568755 RGPD4Q7Z3J3 1758 aa14.58□□□□□ -0.08
VPS39-211ENST00000568755 L3MBTL2Q969R5 705 aa14.58□□□□□ -0.08
VPS39-211ENST00000568755 R3HDM1Q15032 1099 aaKnown RBP14.57□□□□□ -0.08
VPS39-211ENST00000568755 CABP1Q9NZU7 370 aa14.57□□□□□ -0.08
VPS39-211ENST00000568755 THRAP3Q9Y2W1 955 aaKnown RBP14.57□□□□□ -0.08
VPS39-211ENST00000568755 MON2Q7Z3U7 1717 aa14.56□□□□□ -0.08
VPS39-211ENST00000568755 AATKQ6ZMQ8 1374 aa14.56□□□□□ -0.08
VPS39-211ENST00000568755 CRB1P82279 1406 aa14.56□□□□□ -0.08
VPS39-211ENST00000568755 APBA3O96018 575 aa14.55□□□□□ -0.08
VPS39-211ENST00000568755 PDE3BQ13370 1112 aa14.55□□□□□ -0.08
VPS39-211ENST00000568755 EVC2Q86UK5 1308 aa14.54□□□□□ -0.08
VPS39-211ENST00000568755 USP54Q70EL1 1684 aa14.53□□□□□ -0.08
VPS39-211ENST00000568755 NLRP6P59044 892 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms