RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ALDH1A1P00352 501 aa6.86□□□□□ -1.31
VPS35-207ENST00000568191 AVPP01185 164 aa6.86□□□□□ -1.31
VPS35-207ENST00000568191 VARSP26640 1264 aaKnown RBP6.86□□□□□ -1.31
VPS35-207ENST00000568191 SKOR1P84550 965 aa6.86□□□□□ -1.31
VPS35-207ENST00000568191 AGERQ15109 404 aa6.86□□□□□ -1.31
VPS35-207ENST00000568191 NEUROD2Q15784 382 aa6.86□□□□□ -1.31
VPS35-207ENST00000568191 QPCTQ16769 361 aa6.86□□□□□ -1.31
VPS35-207ENST00000568191 SH3BP2P78314 561 aa6.85□□□□□ -1.31
VPS35-207ENST00000568191 LINC01559Q495D7 138 aa6.85□□□□□ -1.31
VPS35-207ENST00000568191 CRIPAKQ8N1N5 446 aa6.85□□□□□ -1.31
VPS35-207ENST00000568191 ZNF511Q8NB15 262 aa6.85□□□□□ -1.31
VPS35-207ENST00000568191 PNMA1Q8ND90 353 aa6.85□□□□□ -1.31
VPS35-207ENST00000568191 FAM174AQ8TBP5 190 aa6.85□□□□□ -1.31
VPS35-207ENST00000568191 FAM117AQ9C073 453 aa6.85□□□□□ -1.31
VPS35-207ENST00000568191 SMPD1P17405 629 aa6.84□□□□□ -1.31
VPS35-207ENST00000568191 RTL5Q5HYW3 569 aaPredicted RBP6.84□□□□□ -1.31
VPS35-207ENST00000568191 NBPF14Q5TI25 921 aa6.84□□□□□ -1.31
VPS35-207ENST00000568191 AAASQ9NRG9 546 aa6.84□□□□□ -1.31
VPS35-207ENST00000568191 J3QL48 77 aa6.83□□□□□ -1.32
VPS35-207ENST00000568191 SMCPP49901 116 aaPredicted RBP6.83□□□□□ -1.32
VPS35-207ENST00000568191 BPHLQ86WA6 291 aaPredicted RBP6.83□□□□□ -1.32
VPS35-207ENST00000568191 PCMTD1Q96MG8 357 aaPredicted RBP6.83□□□□□ -1.32
VPS35-207ENST00000568191 F12P00748 615 aaPredicted RBP6.82□□□□□ -1.32
VPS35-207ENST00000568191 MAP10Q9P2G4 905 aa6.82□□□□□ -1.32
VPS35-207ENST00000568191 ST8SIA5O15466 376 aa6.81□□□□□ -1.32
VPS35-207ENST00000568191 PER1O15534 1290 aaPredicted RBP6.81□□□□□ -1.32
VPS35-207ENST00000568191 TPRNQ4KMQ1 711 aa6.81□□□□□ -1.32
VPS35-207ENST00000568191 MPNDQ8N594 471 aa6.81□□□□□ -1.32
VPS35-207ENST00000568191 GPKOWQ92917 476 aaPredicted RBP eCLIP6.81□□□□□ -1.32
VPS35-207ENST00000568191 GOPCQ9HD26 462 aa6.81□□□□□ -1.32
VPS35-207ENST00000568191 SIAH2O43255 324 aa6.8□□□□□ -1.32
VPS35-207ENST00000568191 PPP2R2DQ66LE6 453 aa6.8□□□□□ -1.32
VPS35-207ENST00000568191 SENP2Q9HC62 589 aa6.8□□□□□ -1.32
VPS35-207ENST00000568191 AP1G2O75843 785 aa6.79□□□□□ -1.32
VPS35-207ENST00000568191 PROCA1Q8NCQ7 364 aaPredicted RBP6.79□□□□□ -1.32
VPS35-207ENST00000568191 IL27Q8NEV9 243 aa6.79□□□□□ -1.32
VPS35-207ENST00000568191 HPS1Q92902 700 aa6.79□□□□□ -1.32
VPS35-207ENST00000568191 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.79□□□□□ -1.32
VPS35-207ENST00000568191 C11orf95C9JLR9 678 aaPredicted RBP6.78□□□□□ -1.32
VPS35-207ENST00000568191 CTDSPL2Q05D32 466 aa6.78□□□□□ -1.32
VPS35-207ENST00000568191 ARID5BQ14865 1188 aa6.78□□□□□ -1.32
VPS35-207ENST00000568191 CAPN5O15484 640 aaPredicted RBP6.77□□□□□ -1.33
VPS35-207ENST00000568191 TMEM259Q4ZIN3 620 aa6.77□□□□□ -1.33
VPS35-207ENST00000568191 FOXJ1Q92949 421 aa6.77□□□□□ -1.33
VPS35-207ENST00000568191 KIFC2Q96AC6 838 aa6.77□□□□□ -1.33
VPS35-207ENST00000568191 ZC3H4Q9UPT8 1303 aaKnown RBP6.76□□□□□ -1.33
VPS35-207ENST00000568191 NR5A1Q13285 461 aa6.76□□□□□ -1.33
VPS35-207ENST00000568191 ATP13A2Q9NQ11 1180 aa6.76□□□□□ -1.33
VPS35-207ENST00000568191 MAGEB6P1A0A0J9YX57 407 aa6.75□□□□□ -1.33
VPS35-207ENST00000568191 ADH1CP00326 375 aa6.75□□□□□ -1.33
VPS35-207ENST00000568191 NNTQ13423 1086 aa6.75□□□□□ -1.33
VPS35-207ENST00000568191 PDXDC2PQ6P474 469 aa6.75□□□□□ -1.33
VPS35-207ENST00000568191 CDK15Q96Q40 435 aa6.75□□□□□ -1.33
VPS35-207ENST00000568191 FKBPLQ9UIM3 349 aa6.75□□□□□ -1.33
VPS35-207ENST00000568191 TLL2Q9Y6L7 1015 aa6.75□□□□□ -1.33
VPS35-207ENST00000568191 RFC5P40937 340 aa6.74□□□□□ -1.33
VPS35-207ENST00000568191 BRPF1P55201 1214 aaPredicted RBP6.74□□□□□ -1.33
VPS35-207ENST00000568191 PTK2Q05397 1052 aa6.74□□□□□ -1.33
VPS35-207ENST00000568191 ZBTB33Q86T24 672 aa6.74□□□□□ -1.33
VPS35-207ENST00000568191 LRRN4Q8WUT4 740 aa6.74□□□□□ -1.33
VPS35-207ENST00000568191 ARHGAP9Q9BRR9 750 aa6.74□□□□□ -1.33
VPS35-207ENST00000568191 CDV3Q9UKY7 258 aaKnown RBP6.74□□□□□ -1.33
VPS35-207ENST00000568191 SCARF1Q14162 830 aa6.73□□□□□ -1.33
VPS35-207ENST00000568191 VASH1Q7L8A9 365 aaPredicted RBP6.73□□□□□ -1.33
VPS35-207ENST00000568191 TRIM52Q96A61 297 aa6.73□□□□□ -1.33
VPS35-207ENST00000568191 CARD14Q9BXL6 1004 aa6.73□□□□□ -1.33
VPS35-207ENST00000568191 GMPR2Q9P2T1 348 aaKnown RBP6.73□□□□□ -1.33
VPS35-207ENST00000568191 DACH1Q9UI36 760 aa6.73□□□□□ -1.33
VPS35-207ENST00000568191 GPSM3Q9Y4H4 160 aa6.73□□□□□ -1.33
VPS35-207ENST00000568191 APBB1O00213 710 aa6.72□□□□□ -1.33
VPS35-207ENST00000568191 UPP2O95045 317 aa6.72□□□□□ -1.33
VPS35-207ENST00000568191 USP17L8P0C7I0 530 aa6.72□□□□□ -1.33
VPS35-207ENST00000568191 WDR4P57081 412 aaKnown RBP6.72□□□□□ -1.33
VPS35-207ENST00000568191 NR6A1Q15406 480 aa6.72□□□□□ -1.33
VPS35-207ENST00000568191 SH3BP5LQ7L8J4 393 aa6.72□□□□□ -1.33
VPS35-207ENST00000568191 MAP4K5Q9Y4K4 846 aa6.72□□□□□ -1.33
VPS35-207ENST00000568191 POTECB2RU33 542 aa6.71□□□□□ -1.34
VPS35-207ENST00000568191 SH3RF1Q7Z6J0 888 aa6.71□□□□□ -1.34
VPS35-207ENST00000568191 TRMT44Q8IYL2 757 aaKnown RBP6.71□□□□□ -1.34
VPS35-207ENST00000568191 SLC10A4Q96EP9 437 aa6.71□□□□□ -1.34
VPS35-207ENST00000568191 TRIM47Q96LD4 638 aa6.71□□□□□ -1.34
VPS35-207ENST00000568191 ZNF775Q96BV0 537 aaPredicted RBP6.7□□□□□ -1.34
VPS35-207ENST00000568191 C1QTNF2Q9BXJ5 285 aa6.7□□□□□ -1.34
VPS35-207ENST00000568191 DHX9Q08211 1270 aaKnown RBP6.69□□□□□ -1.34
VPS35-207ENST00000568191 C4orf48Q5BLP8 95 aa6.69□□□□□ -1.34
VPS35-207ENST00000568191 PGPEP1Q9NXJ5 209 aa6.69□□□□□ -1.34
VPS35-207ENST00000568191 EMILIN1Q9Y6C2 1016 aa6.69□□□□□ -1.34
VPS35-207ENST00000568191 ZIC2O95409 532 aaPredicted RBP6.68□□□□□ -1.34
VPS35-207ENST00000568191 FSHRP23945 695 aa6.68□□□□□ -1.34
VPS35-207ENST00000568191 ERFEQ4G0M1 354 aa6.68□□□□□ -1.34
VPS35-207ENST00000568191 BANK1Q8NDB2 785 aa6.68□□□□□ -1.34
VPS35-207ENST00000568191 ZNF592Q92610 1267 aa6.68□□□□□ -1.34
VPS35-207ENST00000568191 PRM3Q9NNZ6 103 aa6.68□□□□□ -1.34
VPS35-207ENST00000568191 TIMP2P16035 220 aa6.67□□□□□ -1.34
VPS35-207ENST00000568191 GRM5P41594 1212 aa6.67□□□□□ -1.34
VPS35-207ENST00000568191 NBPF20Q3BBV1 942 aa6.67□□□□□ -1.34
VPS35-207ENST00000568191 MRPL14Q6P1L8 145 aaKnown RBP6.67□□□□□ -1.34
VPS35-207ENST00000568191 DZIP3Q86Y13 1208 aaKnown RBP6.67□□□□□ -1.34
VPS35-207ENST00000568191 CCDC116Q8IYX3 515 aa6.67□□□□□ -1.34
VPS35-207ENST00000568191 BMP1P13497 986 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms