RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 BTG4Q9NY30 223 aa23.25■■□□□ 1.31
CLN3-229ENST00000567963 CCDC61Q9Y6R9 512 aa23.25■■□□□ 1.31
CLN3-229ENST00000567963 BRWD3Q6RI45 1802 aa23.25■■□□□ 1.31
CLN3-229ENST00000567963 CRYBG1Q9Y4K1 1723 aa23.23■■□□□ 1.31
CLN3-229ENST00000567963 COL14A1Q05707 1796 aaKnown RBP23.23■■□□□ 1.31
CLN3-229ENST00000567963 POLR3AO14802 1390 aaPredicted RBP23.22■■□□□ 1.31
CLN3-229ENST00000567963 PLEKHG3A1L390 1219 aa23.22■■□□□ 1.31
CLN3-229ENST00000567963 NBPF8Q3BBV2 869 aa23.22■■□□□ 1.31
CLN3-229ENST00000567963 NRAPQ86VF7 1730 aa23.22■■□□□ 1.31
CLN3-229ENST00000567963 L3MBTL2Q969R5 705 aa23.22■■□□□ 1.31
CLN3-229ENST00000567963 ACEP12821 1306 aa23.22■■□□□ 1.31
CLN3-229ENST00000567963 TOPAZ1Q8N9V7 1692 aa23.21■■□□□ 1.31
CLN3-229ENST00000567963 CENPJQ9HC77 1338 aaPredicted RBP23.19■■□□□ 1.3
CLN3-229ENST00000567963 KRT27Q7Z3Y8 459 aa23.18■■□□□ 1.3
CLN3-229ENST00000567963 SIN3AQ96ST3 1273 aa23.18■■□□□ 1.3
CLN3-229ENST00000567963 BLMP54132 1417 aaPredicted RBP23.18■■□□□ 1.3
CLN3-229ENST00000567963 SRCAPQ6ZRS2 3230 aa23.18■■□□□ 1.3
CLN3-229ENST00000567963 PRDM11Q9NQV5 511 aa23.17■■□□□ 1.3
CLN3-229ENST00000567963 SRPK2P78362 688 aaKnown RBP23.17■■□□□ 1.3
CLN3-229ENST00000567963 FAM98CQ17RN3 349 aaKnown RBP23.17■■□□□ 1.3
CLN3-229ENST00000567963 NUTM2GQ5VZR2 741 aa23.16■■□□□ 1.3
CLN3-229ENST00000567963 ZRANB1Q9UGI0 708 aa23.15■■□□□ 1.3
CLN3-229ENST00000567963 KIAA0232Q92628 1395 aa23.14■■□□□ 1.29
CLN3-229ENST00000567963 SPATA31A5Q5VU36 1347 aa23.14■■□□□ 1.29
CLN3-229ENST00000567963 SPATA31A7Q8IWB4 1347 aa23.14■■□□□ 1.29
CLN3-229ENST00000567963 A0A0G2JS52 829 aa23.14■■□□□ 1.29
CLN3-229ENST00000567963 MYT1Q01538 1121 aa23.14■■□□□ 1.29
CLN3-229ENST00000567963 CABP2Q9NPB3 220 aa23.14■■□□□ 1.29
CLN3-229ENST00000567963 PHRF1Q9P1Y6 1649 aaKnown RBP23.13■■□□□ 1.29
CLN3-229ENST00000567963 NEUROD1Q13562 356 aa23.13■■□□□ 1.29
CLN3-229ENST00000567963 ABTB2Q8N961 1025 aa23.13■■□□□ 1.29
CLN3-229ENST00000567963 PPIP5K1Q6PFW1 1433 aa23.13■■□□□ 1.29
CLN3-229ENST00000567963 ZC3H6P61129 1189 aaKnown RBP23.12■■□□□ 1.29
CLN3-229ENST00000567963 QRICH2Q9H0J4 1663 aa23.12■■□□□ 1.29
CLN3-229ENST00000567963 SF3B2Q13435 895 aaKnown RBP23.11■■□□□ 1.29
CLN3-229ENST00000567963 CHRNA2Q15822 529 aa23.11■■□□□ 1.29
CLN3-229ENST00000567963 TRPM1Q7Z4N2 1603 aa23.1■■□□□ 1.29
CLN3-229ENST00000567963 DEFB132Q7Z7B7 95 aa23.1■■□□□ 1.29
CLN3-229ENST00000567963 CABP1Q9NZU7 370 aa23.08■■□□□ 1.29
CLN3-229ENST00000567963 SPATA31A1Q5TZJ5 1347 aa23.07■■□□□ 1.28
CLN3-229ENST00000567963 NLRP13Q86W25 1043 aa23.06■■□□□ 1.28
CLN3-229ENST00000567963 STRN4Q9NRL3 753 aa23.06■■□□□ 1.28
CLN3-229ENST00000567963 USP19O94966 1318 aa23.06■■□□□ 1.28
CLN3-229ENST00000567963 BRD4O60885 1362 aaPredicted RBP23.05■■□□□ 1.28
CLN3-229ENST00000567963 ROCK2O75116 1388 aaKnown RBP23.05■■□□□ 1.28
CLN3-229ENST00000567963 NRKQ7Z2Y5 1582 aa23.05■■□□□ 1.28
CLN3-229ENST00000567963 THSD7AQ9UPZ6 1657 aa23.05■■□□□ 1.28
CLN3-229ENST00000567963 EVC2Q86UK5 1308 aa23.05■■□□□ 1.28
CLN3-229ENST00000567963 GCP02774 474 aa23.04■■□□□ 1.28
CLN3-229ENST00000567963 CPDO75976 1380 aa23.04■■□□□ 1.28
CLN3-229ENST00000567963 EVA1CP58658 441 aa23.03■■□□□ 1.28
CLN3-229ENST00000567963 FAM182BQ5T319 152 aa23.03■■□□□ 1.28
CLN3-229ENST00000567963 USP6P35125 1406 aa23.02■■□□□ 1.28
CLN3-229ENST00000567963 CAMTA1Q9Y6Y1 1673 aa23.01■■□□□ 1.27
CLN3-229ENST00000567963 USP35Q9P2H5 1018 aa23■■□□□ 1.27
CLN3-229ENST00000567963 SSH2Q76I76 1423 aa23■■□□□ 1.27
CLN3-229ENST00000567963 BAG6P46379 1132 aa22.99■■□□□ 1.27
CLN3-229ENST00000567963 LMO7Q8WWI1 1683 aa22.99■■□□□ 1.27
CLN3-229ENST00000567963 NLRP6P59044 892 aa22.98■■□□□ 1.27
CLN3-229ENST00000567963 LARP1Q6PKG0 1096 aaKnown RBP22.98■■□□□ 1.27
CLN3-229ENST00000567963 BARGINQ6ZT62 677 aa22.98■■□□□ 1.27
CLN3-229ENST00000567963 ZNF692Q9BU19 519 aaPredicted RBP22.96■■□□□ 1.27
CLN3-229ENST00000567963 RGPD1P0DJD0 1748 aa22.95■■□□□ 1.26
CLN3-229ENST00000567963 TCP11L2Q8N4U5 519 aa22.94■■□□□ 1.26
CLN3-229ENST00000567963 EN1Q05925 392 aaPredicted RBP22.93■■□□□ 1.26
CLN3-229ENST00000567963 FAM196AQ6ZSG2 479 aa22.93■■□□□ 1.26
CLN3-229ENST00000567963 SLIT3O75094 1523 aa22.93■■□□□ 1.26
CLN3-229ENST00000567963 THRAP3Q9Y2W1 955 aaKnown RBP22.92■■□□□ 1.26
CLN3-229ENST00000567963 PIK3C2AO00443 1686 aa22.92■■□□□ 1.26
CLN3-229ENST00000567963 COL5A2P05997 1499 aaPredicted RBP22.92■■□□□ 1.26
CLN3-229ENST00000567963 AATKQ6ZMQ8 1374 aa22.91■■□□□ 1.26
CLN3-229ENST00000567963 TTC21BQ7Z4L5 1316 aa22.91■■□□□ 1.26
CLN3-229ENST00000567963 PDE3BQ13370 1112 aa22.91■■□□□ 1.26
CLN3-229ENST00000567963 CARD11Q9BXL7 1154 aa22.91■■□□□ 1.26
CLN3-229ENST00000567963 AKAP12Q02952 1782 aa22.9■■□□□ 1.26
CLN3-229ENST00000567963 ZBTB7CA1YPR0 619 aa22.9■■□□□ 1.26
CLN3-229ENST00000567963 DISP2A7MBM2 1401 aa22.89■■□□□ 1.26
CLN3-229ENST00000567963 CPSF1Q10570 1443 aaKnown RBP22.89■■□□□ 1.26
CLN3-229ENST00000567963 TNS1Q9HBL0 1735 aaKnown RBP22.89■■□□□ 1.26
CLN3-229ENST00000567963 SBNO2Q9Y2G9 1366 aa22.89■■□□□ 1.26
CLN3-229ENST00000567963 TRIM37O94972 964 aa22.89■■□□□ 1.25
CLN3-229ENST00000567963 CRB1P82279 1406 aa22.88■■□□□ 1.25
CLN3-229ENST00000567963 TONSLQ96HA7 1378 aa22.88■■□□□ 1.25
CLN3-229ENST00000567963 TTC21AQ8NDW8 1320 aa22.87■■□□□ 1.25
CLN3-229ENST00000567963 KCNH5Q8NCM2 988 aa22.86■■□□□ 1.25
CLN3-229ENST00000567963 KTN1Q86UP2 1357 aaKnown RBP22.86■■□□□ 1.25
CLN3-229ENST00000567963 COL18A1P39060 1754 aa22.86■■□□□ 1.25
CLN3-229ENST00000567963 AXIN2Q9Y2T1 843 aa22.85■■□□□ 1.25
CLN3-229ENST00000567963 EZH2Q15910 746 aaKnown RBP22.85■■□□□ 1.25
CLN3-229ENST00000567963 ARHGEF25Q86VW2 580 aa22.85■■□□□ 1.25
CLN3-229ENST00000567963 PSDA5PKW4 1024 aaPredicted RBP22.84■■□□□ 1.25
CLN3-229ENST00000567963 CAMKK2Q96RR4 588 aa22.84■■□□□ 1.25
CLN3-229ENST00000567963 PARP4Q9UKK3 1724 aaKnown RBP22.83■■□□□ 1.25
CLN3-229ENST00000567963 APBA3O96018 575 aa22.83■■□□□ 1.25
CLN3-229ENST00000567963 TOM1L2Q6ZVM7 507 aa22.82■■□□□ 1.24
CLN3-229ENST00000567963 SOX12O15370 315 aa22.8■■□□□ 1.24
CLN3-229ENST00000567963 MON2Q7Z3U7 1717 aa22.8■■□□□ 1.24
CLN3-229ENST00000567963 WDR17Q8IZU2 1322 aa22.8■■□□□ 1.24
CLN3-229ENST00000567963 TRIM26Q12899 539 aaPredicted RBP22.79■■□□□ 1.24
CLN3-229ENST00000567963 CD163L1Q9NR16 1453 aa22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms