RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 MON2Q7Z3U7 1717 aa27.35■■□□□ 1.97
CLN3-225ENST00000566824 SPATA31A6Q5VVP1 1343 aa27.34■■□□□ 1.97
CLN3-225ENST00000566824 SSH2Q76I76 1423 aa27.33■■□□□ 1.97
CLN3-225ENST00000566824 ABCA3Q99758 1704 aa27.33■■□□□ 1.96
CLN3-225ENST00000566824 NRKQ7Z2Y5 1582 aa27.32■■□□□ 1.96
CLN3-225ENST00000566824 CABLES1Q8TDN4 633 aa27.32■■□□□ 1.96
CLN3-225ENST00000566824 CRYBG1Q9Y4K1 1723 aa27.3■■□□□ 1.96
CLN3-225ENST00000566824 NUTM2GQ5VZR2 741 aa27.3■■□□□ 1.96
CLN3-225ENST00000566824 KTN1Q86UP2 1357 aaKnown RBP27.29■■□□□ 1.96
CLN3-225ENST00000566824 A0A1W2PP64 1363 aa27.29■■□□□ 1.96
CLN3-225ENST00000566824 ARHGEF10O15013 1369 aa27.29■■□□□ 1.96
CLN3-225ENST00000566824 PIK3C2AO00443 1686 aa27.28■■□□□ 1.96
CLN3-225ENST00000566824 POLR3GLQ9BT43 218 aa27.27■■□□□ 1.96
CLN3-225ENST00000566824 CDCA8Q53HL2 280 aa27.26■■□□□ 1.95
CLN3-225ENST00000566824 ZNF692Q9BU19 519 aaPredicted RBP27.26■■□□□ 1.95
CLN3-225ENST00000566824 ADAMTS2O95450 1211 aa27.25■■□□□ 1.95
CLN3-225ENST00000566824 TTC21BQ7Z4L5 1316 aa27.25■■□□□ 1.95
CLN3-225ENST00000566824 NINLQ9Y2I6 1382 aa27.24■■□□□ 1.95
CLN3-225ENST00000566824 MARF1Q9Y4F3 1742 aaKnown RBP27.24■■□□□ 1.95
CLN3-225ENST00000566824 BRD4O60885 1362 aaPredicted RBP27.22■■□□□ 1.95
CLN3-225ENST00000566824 HDGFL2Q7Z4V5 671 aaPredicted RBP27.22■■□□□ 1.95
CLN3-225ENST00000566824 ABTB2Q8N961 1025 aa27.22■■□□□ 1.95
CLN3-225ENST00000566824 TERF2IPQ9NYB0 399 aa27.22■■□□□ 1.95
CLN3-225ENST00000566824 PHRF1Q9P1Y6 1649 aaKnown RBP27.22■■□□□ 1.95
CLN3-225ENST00000566824 ZRANB1Q9UGI0 708 aa27.21■■□□□ 1.95
CLN3-225ENST00000566824 ANKRD36BQ8N2N9 1353 aa27.21■■□□□ 1.95
CLN3-225ENST00000566824 KIF7Q2M1P5 1343 aa27.2■■□□□ 1.95
CLN3-225ENST00000566824 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.2■■□□□ 1.95
CLN3-225ENST00000566824 MEX3CQ5U5Q3 659 aaKnown RBP27.19■■□□□ 1.94
CLN3-225ENST00000566824 RGS17Q9UGC6 210 aaPredicted RBP27.19■■□□□ 1.94
CLN3-225ENST00000566824 EDC4Q6P2E9 1401 aaKnown RBP27.18■■□□□ 1.94
CLN3-225ENST00000566824 NME9Q86XW9 330 aa27.17■■□□□ 1.94
CLN3-225ENST00000566824 CARD14Q9BXL6 1004 aa27.17■■□□□ 1.94
CLN3-225ENST00000566824 ZEB1P37275 1124 aaPredicted RBP27.16■■□□□ 1.94
CLN3-225ENST00000566824 C8orf37Q96NL8 207 aa27.16■■□□□ 1.94
CLN3-225ENST00000566824 USP19O94966 1318 aa27.16■■□□□ 1.94
CLN3-225ENST00000566824 TTC21AQ8NDW8 1320 aa27.16■■□□□ 1.94
CLN3-225ENST00000566824 NLRP6P59044 892 aa27.16■■□□□ 1.94
CLN3-225ENST00000566824 HAP1P54257 671 aaPredicted RBP27.14■■□□□ 1.93
CLN3-225ENST00000566824 WASHC2AQ641Q2 1341 aa27.13■■□□□ 1.93
CLN3-225ENST00000566824 NLRP13Q86W25 1043 aa27.12■■□□□ 1.93
CLN3-225ENST00000566824 PHF23Q9BUL5 403 aaPredicted RBP27.12■■□□□ 1.93
CLN3-225ENST00000566824 CCDC7Q96M83 1385 aa27.12■■□□□ 1.93
CLN3-225ENST00000566824 USP54Q70EL1 1684 aa27.12■■□□□ 1.93
CLN3-225ENST00000566824 SLIT3O75094 1523 aa27.11■■□□□ 1.93
CLN3-225ENST00000566824 AFF2P51816 1311 aa27.11■■□□□ 1.93
CLN3-225ENST00000566824 NGLY1Q96IV0 654 aa27.1■■□□□ 1.93
CLN3-225ENST00000566824 USP31Q70CQ4 1352 aa27.09■■□□□ 1.93
CLN3-225ENST00000566824 FAM83GA6ND36 823 aa27.09■■□□□ 1.93
CLN3-225ENST00000566824 PLCH1Q4KWH8 1693 aa27.09■■□□□ 1.93
CLN3-225ENST00000566824 NSD3Q9BZ95 1437 aa27.09■■□□□ 1.93
CLN3-225ENST00000566824 KIF20BQ96Q89 1820 aa27.08■■□□□ 1.93
CLN3-225ENST00000566824 ZC3H6P61129 1189 aaKnown RBP27.08■■□□□ 1.93
CLN3-225ENST00000566824 PANK3Q9H999 370 aa27.08■■□□□ 1.93
CLN3-225ENST00000566824 GCP02774 474 aa27.07■■□□□ 1.92
CLN3-225ENST00000566824 KIAA0232Q92628 1395 aa27.06■■□□□ 1.92
CLN3-225ENST00000566824 POTEAQ6S8J7 498 aa27.06■■□□□ 1.92
CLN3-225ENST00000566824 OVOS2A0A0J9YW53 1432 aa27.05■■□□□ 1.92
CLN3-225ENST00000566824 OVOS2Q6IE36 1432 aa27.05■■□□□ 1.92
CLN3-225ENST00000566824 NFAT5O94916 1531 aa27.04■■□□□ 1.92
CLN3-225ENST00000566824 FYB1O15117 783 aa27.04■■□□□ 1.92
CLN3-225ENST00000566824 SOX12O15370 315 aa27.04■■□□□ 1.92
CLN3-225ENST00000566824 CHRNA2Q15822 529 aa27.04■■□□□ 1.92
CLN3-225ENST00000566824 FNBP4Q8N3X1 1017 aaPredicted RBP27.04■■□□□ 1.92
CLN3-225ENST00000566824 BCL9LQ86UU0 1499 aa27.03■■□□□ 1.92
CLN3-225ENST00000566824 COL14A1Q05707 1796 aaKnown RBP27.03■■□□□ 1.92
CLN3-225ENST00000566824 SLIT2O94813 1529 aa27.03■■□□□ 1.92
CLN3-225ENST00000566824 GGNBP2Q9H3C7 697 aa27.03■■□□□ 1.92
CLN3-225ENST00000566824 PRDM11Q9NQV5 511 aa27■■□□□ 1.91
CLN3-225ENST00000566824 NRAPQ86VF7 1730 aa27■■□□□ 1.91
CLN3-225ENST00000566824 NWD2Q9ULI1 1742 aa27■■□□□ 1.91
CLN3-225ENST00000566824 CPDO75976 1380 aa26.99■■□□□ 1.91
CLN3-225ENST00000566824 USP21Q9UK80 565 aa26.99■■□□□ 1.91
CLN3-225ENST00000566824 COL18A1P39060 1754 aa26.98■■□□□ 1.91
CLN3-225ENST00000566824 FBLN1P23142 703 aa26.98■■□□□ 1.91
CLN3-225ENST00000566824 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.98■■□□□ 1.91
CLN3-225ENST00000566824 LMO7Q8WWI1 1683 aa26.98■■□□□ 1.91
CLN3-225ENST00000566824 ZBTB7CA1YPR0 619 aa26.97■■□□□ 1.91
CLN3-225ENST00000566824 LTN1O94822 1766 aa26.96■■□□□ 1.91
CLN3-225ENST00000566824 RGPD5Q99666 1765 aa26.96■■□□□ 1.91
CLN3-225ENST00000566824 ZNF772Q68DY9 489 aaPredicted RBP26.96■■□□□ 1.91
CLN3-225ENST00000566824 CAMTA1Q9Y6Y1 1673 aa26.95■■□□□ 1.91
CLN3-225ENST00000566824 COG3Q96JB2 828 aa26.95■■□□□ 1.91
CLN3-225ENST00000566824 BTG4Q9NY30 223 aa26.95■■□□□ 1.91
CLN3-225ENST00000566824 ILDR2Q71H61 639 aa26.94■■□□□ 1.9
CLN3-225ENST00000566824 KCNH5Q8NCM2 988 aa26.94■■□□□ 1.9
CLN3-225ENST00000566824 ARHGEF25Q86VW2 580 aa26.93■■□□□ 1.9
CLN3-225ENST00000566824 UNC5CLQ8IV45 518 aa26.93■■□□□ 1.9
CLN3-225ENST00000566824 QTRT2Q9H974 415 aaKnown RBP26.93■■□□□ 1.9
CLN3-225ENST00000566824 ATRNO75882 1429 aa26.93■■□□□ 1.9
CLN3-225ENST00000566824 ANKRD26Q9UPS8 1709 aa26.93■■□□□ 1.9
CLN3-225ENST00000566824 CGNL1Q0VF96 1302 aa26.92■■□□□ 1.9
CLN3-225ENST00000566824 PER1O15534 1290 aaPredicted RBP26.91■■□□□ 1.9
CLN3-225ENST00000566824 AXIN2Q9Y2T1 843 aa26.9■■□□□ 1.9
CLN3-225ENST00000566824 AATKQ6ZMQ8 1374 aa26.88■■□□□ 1.89
CLN3-225ENST00000566824 TRPC5Q9UL62 973 aaPredicted RBP26.88■■□□□ 1.89
CLN3-225ENST00000566824 GLI3P10071 1580 aa26.87■■□□□ 1.89
CLN3-225ENST00000566824 AMER1Q5JTC6 1135 aaPredicted RBP26.87■■□□□ 1.89
CLN3-225ENST00000566824 KNSTRNQ9Y448 316 aa26.87■■□□□ 1.89
CLN3-225ENST00000566824 STRN4Q9NRL3 753 aa26.86■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 115.1 ms