RNA–Protein interactions for RNA: ENST00000566339.5

SPSB3-208, Transcript of splA/ryanodine receptor domain and SOCS box containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPSB3, Length 1,784 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPSB3-208ENST00000566339 DZIP1LQ8IYY4 767 aaKnown RBP27.4■■□□□ 1.98
SPSB3-208ENST00000566339 ESF1Q9H501 851 aaKnown RBP27.39■■□□□ 1.98
SPSB3-208ENST00000566339 TRAK1Q9UPV9 953 aa27.38■■□□□ 1.97
SPSB3-208ENST00000566339 TBC1D2Q9BYX2 928 aa27.37■■□□□ 1.97
SPSB3-208ENST00000566339 DDX19BQ9UMR2 479 aa27.37■■□□□ 1.97
SPSB3-208ENST00000566339 PREX1Q8TCU6 1659 aa27.37■■□□□ 1.97
SPSB3-208ENST00000566339 GGT6Q6P531 493 aa27.36■■□□□ 1.97
SPSB3-208ENST00000566339 CHGAP10645 457 aaKnown RBP27.35■■□□□ 1.97
SPSB3-208ENST00000566339 RRP7AQ9Y3A4 280 aaKnown RBP27.35■■□□□ 1.97
SPSB3-208ENST00000566339 MYO5BQ9ULV0 1848 aa27.34■■□□□ 1.97
SPSB3-208ENST00000566339 CLTCQ00610 1675 aaKnown RBP27.34■■□□□ 1.97
SPSB3-208ENST00000566339 ANKRD26Q9UPS8 1709 aa27.34■■□□□ 1.97
SPSB3-208ENST00000566339 NEUROD2Q15784 382 aa27.34■■□□□ 1.97
SPSB3-208ENST00000566339 RSPH6AQ9H0K4 717 aa27.34■■□□□ 1.97
SPSB3-208ENST00000566339 PNNQ9H307 717 aaKnown RBP27.34■■□□□ 1.97
SPSB3-208ENST00000566339 FTSJ3Q8IY81 847 aaKnown RBP27.33■■□□□ 1.97
SPSB3-208ENST00000566339 TMEM131LA2VDJ0 1609 aa27.33■■□□□ 1.97
SPSB3-208ENST00000566339 VGFO15240 615 aaPredicted RBP27.32■■□□□ 1.96
SPSB3-208ENST00000566339 COL3A1P02461 1466 aaPredicted RBP27.32■■□□□ 1.96
SPSB3-208ENST00000566339 LMTK3Q96Q04 1460 aa27.31■■□□□ 1.96
SPSB3-208ENST00000566339 CHMP5Q9NZZ3 219 aa27.31■■□□□ 1.96
SPSB3-208ENST00000566339 SMC5Q8IY18 1101 aa27.3■■□□□ 1.96
SPSB3-208ENST00000566339 U2AF1L5P0DN76 240 aaPredicted RBP27.3■■□□□ 1.96
SPSB3-208ENST00000566339 U2AF1Q01081 240 aaKnown RBP eCLIP27.3■■□□□ 1.96
SPSB3-208ENST00000566339 POGKQ9P215 609 aa27.3■■□□□ 1.96
SPSB3-208ENST00000566339 ISY1Q9ULR0 285 aaKnown RBP27.3■■□□□ 1.96
SPSB3-208ENST00000566339 ZNF428Q96B54 188 aa27.29■■□□□ 1.96
SPSB3-208ENST00000566339 PLEKHF1Q96S99 279 aa27.28■■□□□ 1.96
SPSB3-208ENST00000566339 SLKQ9H2G2 1235 aaPredicted RBP27.28■■□□□ 1.96
SPSB3-208ENST00000566339 KIF16BQ96L93 1317 aa27.27■■□□□ 1.96
SPSB3-208ENST00000566339 C22orf23Q9BZE7 217 aa27.27■■□□□ 1.96
SPSB3-208ENST00000566339 IPO8O15397 1037 aaKnown RBP27.27■■□□□ 1.96
SPSB3-208ENST00000566339 HSPA2P54652 639 aa27.27■■□□□ 1.96
SPSB3-208ENST00000566339 ATAD2Q6PL18 1390 aa27.26■■□□□ 1.95
SPSB3-208ENST00000566339 C3P01024 1663 aa27.26■■□□□ 1.95
SPSB3-208ENST00000566339 TMEM132EQ6IEE7 984 aa27.26■■□□□ 1.95
SPSB3-208ENST00000566339 ATF7IPQ6VMQ6 1270 aa27.26■■□□□ 1.95
SPSB3-208ENST00000566339 CHMP4BQ9H444 224 aaKnown RBP27.26■■□□□ 1.95
SPSB3-208ENST00000566339 MCM4P33991 863 aa27.25■■□□□ 1.95
SPSB3-208ENST00000566339 BRPF1P55201 1214 aaPredicted RBP27.25■■□□□ 1.95
SPSB3-208ENST00000566339 TNNQ9UQP3 1299 aa27.25■■□□□ 1.95
SPSB3-208ENST00000566339 CDC42BPGQ6DT37 1551 aa27.25■■□□□ 1.95
SPSB3-208ENST00000566339 FSD2A1L4K1 749 aa27.25■■□□□ 1.95
SPSB3-208ENST00000566339 TMPOP42166 694 aaKnown RBP27.25■■□□□ 1.95
SPSB3-208ENST00000566339 TNNT2P45379 298 aaPredicted RBP27.25■■□□□ 1.95
SPSB3-208ENST00000566339 ALDH1L2Q3SY69 923 aa27.25■■□□□ 1.95
SPSB3-208ENST00000566339 SMC4Q9NTJ3 1288 aa27.25■■□□□ 1.95
SPSB3-208ENST00000566339 NCOA3Q9Y6Q9 1424 aa27.22■■□□□ 1.95
SPSB3-208ENST00000566339 SNX21Q969T3 373 aa27.22■■□□□ 1.95
SPSB3-208ENST00000566339 SLC52A1Q9NWF4 448 aa27.22■■□□□ 1.95
SPSB3-208ENST00000566339 TRIM27P14373 513 aa27.22■■□□□ 1.95
SPSB3-208ENST00000566339 BCL2L13Q9BXK5 485 aa27.22■■□□□ 1.95
SPSB3-208ENST00000566339 EIF5BO60841 1220 aaKnown RBP27.2■■□□□ 1.95
SPSB3-208ENST00000566339 PNPLA6Q8IY17 1366 aa27.2■■□□□ 1.95
SPSB3-208ENST00000566339 PPIP5K1Q6PFW1 1433 aa27.2■■□□□ 1.94
SPSB3-208ENST00000566339 DDX11L8A8MPP1 907 aa27.2■■□□□ 1.94
SPSB3-208ENST00000566339 PTMSP20962 102 aa27.2■■□□□ 1.94
SPSB3-208ENST00000566339 RBM25P49756 843 aaKnown RBP27.2■■□□□ 1.94
SPSB3-208ENST00000566339 EXOSC9Q06265 439 aaKnown RBP27.2■■□□□ 1.94
SPSB3-208ENST00000566339 CIZ1Q9ULV3 898 aaPredicted RBP27.2■■□□□ 1.94
SPSB3-208ENST00000566339 TRIM35Q9UPQ4 493 aa27.2■■□□□ 1.94
SPSB3-208ENST00000566339 GOLGA6L3A6NEY3 463 aa27.19■■□□□ 1.94
SPSB3-208ENST00000566339 SETD1BQ9UPS6 1966 aaKnown RBP27.19■■□□□ 1.94
SPSB3-208ENST00000566339 A0A1W2PP64 1363 aa27.18■■□□□ 1.94
SPSB3-208ENST00000566339 HSCBQ8IWL3 235 aa27.18■■□□□ 1.94
SPSB3-208ENST00000566339 ZBTB40Q9NUA8 1239 aa27.18■■□□□ 1.94
SPSB3-208ENST00000566339 SSH1Q8WYL5 1049 aa27.17■■□□□ 1.94
SPSB3-208ENST00000566339 TERF2IPQ9NYB0 399 aa27.17■■□□□ 1.94
SPSB3-208ENST00000566339 IDI1Q13907 227 aa27.17■■□□□ 1.94
SPSB3-208ENST00000566339 NUCB1Q02818 461 aa27.14■■□□□ 1.94
SPSB3-208ENST00000566339 ITPRIPQ8IWB1 547 aa27.14■■□□□ 1.93
SPSB3-208ENST00000566339 PPP6R1Q9UPN7 881 aa27.14■■□□□ 1.93
SPSB3-208ENST00000566339 DDIT3P35638 169 aa27.12■■□□□ 1.93
SPSB3-208ENST00000566339 CD163L1Q9NR16 1453 aa27.12■■□□□ 1.93
SPSB3-208ENST00000566339 MRE11P49959 708 aa27.11■■□□□ 1.93
SPSB3-208ENST00000566339 MFAP1P55081 439 aaKnown RBP27.11■■□□□ 1.93
SPSB3-208ENST00000566339 ARHGAP45Q92619 1136 aa27.11■■□□□ 1.93
SPSB3-208ENST00000566339 TSR2Q969E8 191 aaKnown RBP27.11■■□□□ 1.93
SPSB3-208ENST00000566339 KIF20BQ96Q89 1820 aa27.11■■□□□ 1.93
SPSB3-208ENST00000566339 PIK3R4Q99570 1358 aa27.11■■□□□ 1.93
SPSB3-208ENST00000566339 NOB1Q9ULX3 412 aaKnown RBP27.11■■□□□ 1.93
SPSB3-208ENST00000566339 ALKQ9UM73 1620 aa27.11■■□□□ 1.93
SPSB3-208ENST00000566339 FCHSD2O94868 740 aa27.1■■□□□ 1.93
SPSB3-208ENST00000566339 PRKCSHP14314 528 aaPredicted RBP27.1■■□□□ 1.93
SPSB3-208ENST00000566339 CALD1Q05682 793 aaKnown RBP27.1■■□□□ 1.93
SPSB3-208ENST00000566339 YTHDC2Q9H6S0 1430 aaKnown RBP27.1■■□□□ 1.93
SPSB3-208ENST00000566339 CFAP44Q96MT7 982 aa27.09■■□□□ 1.93
SPSB3-208ENST00000566339 ZNF692Q9BU19 519 aaPredicted RBP27.09■■□□□ 1.93
SPSB3-208ENST00000566339 SETD1AO15047 1707 aaKnown RBP27.09■■□□□ 1.93
SPSB3-208ENST00000566339 TRAK2O60296 914 aa27.09■■□□□ 1.93
SPSB3-208ENST00000566339 DIAPH1O60610 1272 aaKnown RBP27.09■■□□□ 1.93
SPSB3-208ENST00000566339 BMP2KLQ5H9B9 411 aa27.09■■□□□ 1.93
SPSB3-208ENST00000566339 GCC1Q96CN9 775 aa27.09■■□□□ 1.93
SPSB3-208ENST00000566339 CABP2Q9NPB3 220 aa27.09■■□□□ 1.93
SPSB3-208ENST00000566339 DLC1Q96QB1 1528 aa27.09■■□□□ 1.93
SPSB3-208ENST00000566339 TMEM57Q8N5G2 664 aa27.08■■□□□ 1.93
SPSB3-208ENST00000566339 U2SURPO15042 1029 aaKnown RBP27.07■■□□□ 1.92
SPSB3-208ENST00000566339 XRCC6P12956 609 aaKnown RBP eCLIP27.07■■□□□ 1.92
SPSB3-208ENST00000566339 RIPK4P57078 832 aa27.07■■□□□ 1.92
SPSB3-208ENST00000566339 FYB1O15117 783 aa27.06■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms