RNA–Protein interactions for RNA: ENST00000565517.5

COMMD4-212, Transcript of COMM domain containing 4, humanhuman

TSL 4

Gene COMMD4, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-212ENST00000565517 FNBP4Q8N3X1 1017 aaPredicted RBP21.78■■□□□ 1.08
COMMD4-212ENST00000565517 PUS7Q96PZ0 661 aaKnown RBP21.77■■□□□ 1.08
COMMD4-212ENST00000565517 TESK2Q96S53 571 aa21.76■■□□□ 1.07
COMMD4-212ENST00000565517 HAP1P54257 671 aaPredicted RBP21.75■■□□□ 1.07
COMMD4-212ENST00000565517 CABLES1Q8TDN4 633 aa21.75■■□□□ 1.07
COMMD4-212ENST00000565517 CRYBG1Q9Y4K1 1723 aa21.75■■□□□ 1.07
COMMD4-212ENST00000565517 USP47Q96K76 1375 aa21.74■■□□□ 1.07
COMMD4-212ENST00000565517 SOCS7O14512 581 aa21.74■■□□□ 1.07
COMMD4-212ENST00000565517 ZNF692Q9BU19 519 aaPredicted RBP21.74■■□□□ 1.07
COMMD4-212ENST00000565517 AKAP12Q02952 1782 aa21.74■■□□□ 1.07
COMMD4-212ENST00000565517 USP6P35125 1406 aa21.72■■□□□ 1.07
COMMD4-212ENST00000565517 QTRT2Q9H974 415 aaKnown RBP21.72■■□□□ 1.07
COMMD4-212ENST00000565517 USP21Q9UK80 565 aa21.72■■□□□ 1.07
COMMD4-212ENST00000565517 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.7■■□□□ 1.06
COMMD4-212ENST00000565517 RXRBP28702 533 aa21.7■■□□□ 1.06
COMMD4-212ENST00000565517 CPSF1Q10570 1443 aaKnown RBP21.7■■□□□ 1.06
COMMD4-212ENST00000565517 ABTB2Q8N961 1025 aa21.69■■□□□ 1.06
COMMD4-212ENST00000565517 SSH2Q76I76 1423 aa21.69■■□□□ 1.06
COMMD4-212ENST00000565517 BCL9LQ86UU0 1499 aa21.69■■□□□ 1.06
COMMD4-212ENST00000565517 SLIT2O94813 1529 aa21.69■■□□□ 1.06
COMMD4-212ENST00000565517 PLEKHG5O94827 1062 aa21.68■■□□□ 1.06
COMMD4-212ENST00000565517 TRPC5Q9UL62 973 aaPredicted RBP21.68■■□□□ 1.06
COMMD4-212ENST00000565517 NWD2Q9ULI1 1742 aa21.68■■□□□ 1.06
COMMD4-212ENST00000565517 PHRF1Q9P1Y6 1649 aaKnown RBP21.67■■□□□ 1.06
COMMD4-212ENST00000565517 RBM6P78332 1123 aaKnown RBP21.67■■□□□ 1.06
COMMD4-212ENST00000565517 CDK12Q9NYV4 1490 aaPredicted RBP21.66■■□□□ 1.06
COMMD4-212ENST00000565517 TMF1P82094 1093 aa21.66■■□□□ 1.06
COMMD4-212ENST00000565517 NLRP13Q86W25 1043 aa21.66■■□□□ 1.06
COMMD4-212ENST00000565517 MON2Q7Z3U7 1717 aa21.66■■□□□ 1.06
COMMD4-212ENST00000565517 PLCH1Q4KWH8 1693 aa21.66■■□□□ 1.06
COMMD4-212ENST00000565517 ATRNO75882 1429 aa21.65■■□□□ 1.06
COMMD4-212ENST00000565517 FAM83GA6ND36 823 aa21.65■■□□□ 1.06
COMMD4-212ENST00000565517 UNC5CLQ8IV45 518 aa21.65■■□□□ 1.06
COMMD4-212ENST00000565517 COL14A1Q05707 1796 aaKnown RBP21.64■■□□□ 1.06
COMMD4-212ENST00000565517 NINLQ9Y2I6 1382 aa21.64■■□□□ 1.06
COMMD4-212ENST00000565517 NUTM2GQ5VZR2 741 aa21.64■■□□□ 1.05
COMMD4-212ENST00000565517 KTN1Q86UP2 1357 aaKnown RBP21.63■■□□□ 1.05
COMMD4-212ENST00000565517 USP19O94966 1318 aa21.63■■□□□ 1.05
COMMD4-212ENST00000565517 TTC21BQ7Z4L5 1316 aa21.63■■□□□ 1.05
COMMD4-212ENST00000565517 TTC21AQ8NDW8 1320 aa21.63■■□□□ 1.05
COMMD4-212ENST00000565517 NRKQ7Z2Y5 1582 aa21.63■■□□□ 1.05
COMMD4-212ENST00000565517 TMC1Q8TDI8 760 aa21.63■■□□□ 1.05
COMMD4-212ENST00000565517 SLC12A5Q9H2X9 1139 aa21.63■■□□□ 1.05
COMMD4-212ENST00000565517 CD163L1Q9NR16 1453 aa21.63■■□□□ 1.05
COMMD4-212ENST00000565517 CDCA8Q53HL2 280 aa21.62■■□□□ 1.05
COMMD4-212ENST00000565517 PIK3C2AO00443 1686 aa21.62■■□□□ 1.05
COMMD4-212ENST00000565517 HDGFL2Q7Z4V5 671 aaPredicted RBP21.61■■□□□ 1.05
COMMD4-212ENST00000565517 TERF2IPQ9NYB0 399 aa21.61■■□□□ 1.05
COMMD4-212ENST00000565517 NLRP6P59044 892 aa21.6■■□□□ 1.05
COMMD4-212ENST00000565517 PRDM11Q9NQV5 511 aa21.59■■□□□ 1.05
COMMD4-212ENST00000565517 NRAPQ86VF7 1730 aa21.58■■□□□ 1.05
COMMD4-212ENST00000565517 GCP02774 474 aa21.58■■□□□ 1.05
COMMD4-212ENST00000565517 EIF4G2P78344 907 aaKnown RBP eCLIP21.58■■□□□ 1.05
COMMD4-212ENST00000565517 GJD4Q96KN9 370 aaPredicted RBP21.58■■□□□ 1.05
COMMD4-212ENST00000565517 CPDO75976 1380 aa21.58■■□□□ 1.04
COMMD4-212ENST00000565517 KIAA0232Q92628 1395 aa21.58■■□□□ 1.04
COMMD4-212ENST00000565517 SLIT3O75094 1523 aa21.57■■□□□ 1.04
COMMD4-212ENST00000565517 VPS72Q15906 364 aa21.57■■□□□ 1.04
COMMD4-212ENST00000565517 BTG4Q9NY30 223 aa21.57■■□□□ 1.04
COMMD4-212ENST00000565517 EDC4Q6P2E9 1401 aaKnown RBP21.56■■□□□ 1.04
COMMD4-212ENST00000565517 ZC3H6P61129 1189 aaKnown RBP21.56■■□□□ 1.04
COMMD4-212ENST00000565517 A0A1W2PP64 1363 aa21.56■■□□□ 1.04
COMMD4-212ENST00000565517 USP54Q70EL1 1684 aa21.55■■□□□ 1.04
COMMD4-212ENST00000565517 RGS12O14924 1447 aa21.55■■□□□ 1.04
COMMD4-212ENST00000565517 GLI3P10071 1580 aa21.53■■□□□ 1.04
COMMD4-212ENST00000565517 USP31Q70CQ4 1352 aa21.53■■□□□ 1.04
COMMD4-212ENST00000565517 ANKRD36BQ8N2N9 1353 aa21.52■■□□□ 1.04
COMMD4-212ENST00000565517 HSPA5P11021 654 aaKnown RBP21.52■■□□□ 1.04
COMMD4-212ENST00000565517 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.52■■□□□ 1.04
COMMD4-212ENST00000565517 KCNH5Q8NCM2 988 aa21.52■■□□□ 1.04
COMMD4-212ENST00000565517 CHRNA2Q15822 529 aa21.51■■□□□ 1.03
COMMD4-212ENST00000565517 LMO7Q8WWI1 1683 aa21.5■■□□□ 1.03
COMMD4-212ENST00000565517 MYOM1P52179 1685 aa21.48■■□□□ 1.03
COMMD4-212ENST00000565517 CAMTA1Q9Y6Y1 1673 aa21.48■■□□□ 1.03
COMMD4-212ENST00000565517 ONECUT3O60422 494 aaPredicted RBP21.48■■□□□ 1.03
COMMD4-212ENST00000565517 NME9Q86XW9 330 aa21.48■■□□□ 1.03
COMMD4-212ENST00000565517 CCDC9Q9Y3X0 531 aaKnown RBP21.48■■□□□ 1.03
COMMD4-212ENST00000565517 AATKQ6ZMQ8 1374 aa21.48■■□□□ 1.03
COMMD4-212ENST00000565517 COL18A1P39060 1754 aa21.46■■□□□ 1.03
COMMD4-212ENST00000565517 SPATA31A5Q5VU36 1347 aa21.46■■□□□ 1.03
COMMD4-212ENST00000565517 SPATA31A7Q8IWB4 1347 aa21.46■■□□□ 1.03
COMMD4-212ENST00000565517 NFAT5O94916 1531 aa21.45■■□□□ 1.02
COMMD4-212ENST00000565517 EVA1CP58658 441 aa21.45■■□□□ 1.02
COMMD4-212ENST00000565517 ARHGEF25Q86VW2 580 aa21.45■■□□□ 1.02
COMMD4-212ENST00000565517 ZRANB1Q9UGI0 708 aa21.45■■□□□ 1.02
COMMD4-212ENST00000565517 OVOS2A0A0J9YW53 1432 aa21.44■■□□□ 1.02
COMMD4-212ENST00000565517 OVOS2Q6IE36 1432 aa21.44■■□□□ 1.02
COMMD4-212ENST00000565517 STRN4Q9NRL3 753 aa21.43■■□□□ 1.02
COMMD4-212ENST00000565517 BRWD3Q6RI45 1802 aa21.43■■□□□ 1.02
COMMD4-212ENST00000565517 RGPD5Q99666 1765 aa21.41■■□□□ 1.02
COMMD4-212ENST00000565517 ABCC6O95255 1503 aa21.41■■□□□ 1.02
COMMD4-212ENST00000565517 COL5A2P05997 1499 aaPredicted RBP21.41■■□□□ 1.02
COMMD4-212ENST00000565517 SPATA31A1Q5TZJ5 1347 aa21.41■■□□□ 1.02
COMMD4-212ENST00000565517 SEPT12Q8IYM1 358 aa21.41■■□□□ 1.02
COMMD4-212ENST00000565517 SOX12O15370 315 aa21.4■■□□□ 1.02
COMMD4-212ENST00000565517 LTN1O94822 1766 aa21.4■■□□□ 1.02
COMMD4-212ENST00000565517 ZBTB7CA1YPR0 619 aa21.39■■□□□ 1.01
COMMD4-212ENST00000565517 FAM98CQ17RN3 349 aaKnown RBP21.39■■□□□ 1.01
COMMD4-212ENST00000565517 UPF1Q92900 1129 aaKnown RBP eCLIP21.39■■□□□ 1.01
COMMD4-212ENST00000565517 COG3Q96JB2 828 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms