RNA–Protein interactions for RNA: ENST00000565511.5

RAB40C-209, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 783 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-209ENST00000565511 VPS72Q15906 364 aa34.42■■■■□ 3.1
RAB40C-209ENST00000565511 QRICH2Q9H0J4 1663 aa34.41■■■■□ 3.1
RAB40C-209ENST00000565511 L3MBTL2Q969R5 705 aa34.41■■■■□ 3.1
RAB40C-209ENST00000565511 PHRF1Q9P1Y6 1649 aaKnown RBP34.41■■■■□ 3.1
RAB40C-209ENST00000565511 TRPM1Q7Z4N2 1603 aa34.39■■■■□ 3.1
RAB40C-209ENST00000565511 PAK3O75914 559 aaPredicted RBP34.38■■■■□ 3.09
RAB40C-209ENST00000565511 POLR3AO14802 1390 aaPredicted RBP34.37■■■■□ 3.09
RAB40C-209ENST00000565511 ACEP12821 1306 aa34.33■■■■□ 3.09
RAB40C-209ENST00000565511 CENPJQ9HC77 1338 aaPredicted RBP34.33■■■■□ 3.09
RAB40C-209ENST00000565511 SEPT12Q8IYM1 358 aa34.33■■■■□ 3.09
RAB40C-209ENST00000565511 BTG4Q9NY30 223 aa34.32■■■■□ 3.08
RAB40C-209ENST00000565511 CCDC9Q9Y3X0 531 aaKnown RBP34.32■■■■□ 3.08
RAB40C-209ENST00000565511 CCDC61Q9Y6R9 512 aa34.31■■■■□ 3.08
RAB40C-209ENST00000565511 NUTM2GQ5VZR2 741 aa34.3■■■■□ 3.08
RAB40C-209ENST00000565511 PLEKHG3A1L390 1219 aa34.29■■■■□ 3.08
RAB40C-209ENST00000565511 NBPF8Q3BBV2 869 aa34.29■■■■□ 3.08
RAB40C-209ENST00000565511 ONECUT3O60422 494 aaPredicted RBP34.28■■■■□ 3.08
RAB40C-209ENST00000565511 NEUROD1Q13562 356 aa34.28■■■■□ 3.08
RAB40C-209ENST00000565511 CABP2Q9NPB3 220 aa34.27■■■■□ 3.08
RAB40C-209ENST00000565511 PPIP5K1Q6PFW1 1433 aa34.27■■■■□ 3.08
RAB40C-209ENST00000565511 NRKQ7Z2Y5 1582 aa34.27■■■■□ 3.08
RAB40C-209ENST00000565511 KIAA0232Q92628 1395 aa34.25■■■■□ 3.07
RAB40C-209ENST00000565511 SRPK2P78362 688 aaKnown RBP34.23■■■■□ 3.07
RAB40C-209ENST00000565511 PRDM11Q9NQV5 511 aa34.23■■■■□ 3.07
RAB40C-209ENST00000565511 CHRNA2Q15822 529 aa34.22■■■■□ 3.07
RAB40C-209ENST00000565511 FAM98CQ17RN3 349 aaKnown RBP34.22■■■■□ 3.07
RAB40C-209ENST00000565511 THSD7AQ9UPZ6 1657 aa34.21■■■■□ 3.07
RAB40C-209ENST00000565511 BLMP54132 1417 aaPredicted RBP34.2■■■■□ 3.06
RAB40C-209ENST00000565511 SPATA31A5Q5VU36 1347 aa34.19■■■■□ 3.06
RAB40C-209ENST00000565511 SPATA31A7Q8IWB4 1347 aa34.19■■■■□ 3.06
RAB40C-209ENST00000565511 ZC3H6P61129 1189 aaKnown RBP34.18■■■■□ 3.06
RAB40C-209ENST00000565511 KRT27Q7Z3Y8 459 aa34.17■■■■□ 3.06
RAB40C-209ENST00000565511 CCDC125Q86Z20 511 aa34.17■■■■□ 3.06
RAB40C-209ENST00000565511 ROCK2O75116 1388 aaKnown RBP34.16■■■■□ 3.06
RAB40C-209ENST00000565511 USP19O94966 1318 aa34.16■■■■□ 3.06
RAB40C-209ENST00000565511 LMO7Q8WWI1 1683 aa34.15■■■■□ 3.06
RAB40C-209ENST00000565511 A0A0G2JS52 829 aa34.13■■■■□ 3.05
RAB40C-209ENST00000565511 MYT1Q01538 1121 aa34.13■■■■□ 3.05
RAB40C-209ENST00000565511 ABTB2Q8N961 1025 aa34.13■■■■□ 3.05
RAB40C-209ENST00000565511 DEFB132Q7Z7B7 95 aa34.12■■■■□ 3.05
RAB40C-209ENST00000565511 CABP1Q9NZU7 370 aa34.12■■■■□ 3.05
RAB40C-209ENST00000565511 USP6P35125 1406 aa34.12■■■■□ 3.05
RAB40C-209ENST00000565511 CAMTA1Q9Y6Y1 1673 aa34.11■■■■□ 3.05
RAB40C-209ENST00000565511 PIK3C2AO00443 1686 aa34.09■■■■□ 3.05
RAB40C-209ENST00000565511 SSH2Q76I76 1423 aa34.08■■■■□ 3.05
RAB40C-209ENST00000565511 STRN4Q9NRL3 753 aa34.08■■■■□ 3.05
RAB40C-209ENST00000565511 SPATA31A1Q5TZJ5 1347 aa34.07■■■■□ 3.05
RAB40C-209ENST00000565511 FAM182BQ5T319 152 aa34.07■■■■□ 3.04
RAB40C-209ENST00000565511 AKAP12Q02952 1782 aa34.07■■■■□ 3.04
RAB40C-209ENST00000565511 CPDO75976 1380 aa34.06■■■■□ 3.04
RAB40C-209ENST00000565511 EVC2Q86UK5 1308 aa34.04■■■■□ 3.04
RAB40C-209ENST00000565511 SLIT3O75094 1523 aa34.04■■■■□ 3.04
RAB40C-209ENST00000565511 ZRANB1Q9UGI0 708 aa34.02■■■■□ 3.04
RAB40C-209ENST00000565511 BRD4O60885 1362 aaPredicted RBP34.01■■■■□ 3.04
RAB40C-209ENST00000565511 SRCAPQ6ZRS2 3230 aa34.01■■■■□ 3.04
RAB40C-209ENST00000565511 GCP02774 474 aa34.01■■■■□ 3.03
RAB40C-209ENST00000565511 TNS1Q9HBL0 1735 aaKnown RBP34.01■■■■□ 3.03
RAB40C-209ENST00000565511 RGPD1P0DJD0 1748 aa34■■■■□ 3.03
RAB40C-209ENST00000565511 NLRP13Q86W25 1043 aa34■■■■□ 3.03
RAB40C-209ENST00000565511 LARP1Q6PKG0 1096 aaKnown RBP33.98■■■■□ 3.03
RAB40C-209ENST00000565511 COL5A2P05997 1499 aaPredicted RBP33.96■■■■□ 3.03
RAB40C-209ENST00000565511 COL18A1P39060 1754 aa33.96■■■■□ 3.03
RAB40C-209ENST00000565511 USP35Q9P2H5 1018 aa33.96■■■■□ 3.03
RAB40C-209ENST00000565511 SF3B2Q13435 895 aaKnown RBP33.95■■■■□ 3.03
RAB40C-209ENST00000565511 NLRP6P59044 892 aa33.94■■■■□ 3.02
RAB40C-209ENST00000565511 MON2Q7Z3U7 1717 aa33.93■■■■□ 3.02
RAB40C-209ENST00000565511 EVA1CP58658 441 aa33.92■■■■□ 3.02
RAB40C-209ENST00000565511 CPSF1Q10570 1443 aaKnown RBP33.92■■■■□ 3.02
RAB40C-209ENST00000565511 SBNO2Q9Y2G9 1366 aa33.91■■■■□ 3.02
RAB40C-209ENST00000565511 TTC21BQ7Z4L5 1316 aa33.91■■■■□ 3.02
RAB40C-209ENST00000565511 TONSLQ96HA7 1378 aa33.9■■■■□ 3.02
RAB40C-209ENST00000565511 ZBTB7CA1YPR0 619 aa33.9■■■■□ 3.02
RAB40C-209ENST00000565511 CARD11Q9BXL7 1154 aa33.9■■■■□ 3.02
RAB40C-209ENST00000565511 BARGINQ6ZT62 677 aa33.88■■■■□ 3.01
RAB40C-209ENST00000565511 RGPD5Q99666 1765 aa33.88■■■■□ 3.01
RAB40C-209ENST00000565511 CD163L1Q9NR16 1453 aa33.87■■■■□ 3.01
RAB40C-209ENST00000565511 PARP4Q9UKK3 1724 aaKnown RBP33.87■■■■□ 3.01
RAB40C-209ENST00000565511 AATKQ6ZMQ8 1374 aa33.85■■■■□ 3.01
RAB40C-209ENST00000565511 BAG6P46379 1132 aa33.85■■■■□ 3.01
RAB40C-209ENST00000565511 TCP11L2Q8N4U5 519 aa33.85■■■■□ 3.01
RAB40C-209ENST00000565511 NFAT5O94916 1531 aa33.84■■■■□ 3.01
RAB40C-209ENST00000565511 EN1Q05925 392 aaPredicted RBP33.84■■■■□ 3.01
RAB40C-209ENST00000565511 DISP2A7MBM2 1401 aa33.83■■■■□ 3.01
RAB40C-209ENST00000565511 WNK3Q9BYP7 1800 aa33.83■■■■□ 3.01
RAB40C-209ENST00000565511 KTN1Q86UP2 1357 aaKnown RBP33.83■■■■□ 3.01
RAB40C-209ENST00000565511 CRB1P82279 1406 aa33.81■■■■□ 3
RAB40C-209ENST00000565511 ZNF692Q9BU19 519 aaPredicted RBP33.81■■■■□ 3
RAB40C-209ENST00000565511 AXIN2Q9Y2T1 843 aa33.81■■■■□ 3
RAB40C-209ENST00000565511 LRRC37A3O60309 1634 aa33.8■■■■□ 3
RAB40C-209ENST00000565511 USP54Q70EL1 1684 aa33.8■■■■□ 3
RAB40C-209ENST00000565511 TRIM37O94972 964 aa33.79■■■■□ 3
RAB40C-209ENST00000565511 TRIM26Q12899 539 aaPredicted RBP33.79■■■■□ 3
RAB40C-209ENST00000565511 TTC21AQ8NDW8 1320 aa33.79■■■■□ 3
RAB40C-209ENST00000565511 SOX12O15370 315 aa33.78■■■■□ 3
RAB40C-209ENST00000565511 PEAK1Q9H792 1746 aa33.76■■■■□ 3
RAB40C-209ENST00000565511 FAM196AQ6ZSG2 479 aa33.76■■■□□ 2.99
RAB40C-209ENST00000565511 ARHGEF25Q86VW2 580 aa33.76■■■□□ 2.99
RAB40C-209ENST00000565511 PSDA5PKW4 1024 aaPredicted RBP33.75■■■□□ 2.99
RAB40C-209ENST00000565511 THRAP3Q9Y2W1 955 aaKnown RBP33.75■■■□□ 2.99
RAB40C-209ENST00000565511 PDE3BQ13370 1112 aa33.73■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms