RNA–Protein interactions for RNA: ENST00000565173.1

CAPN3-213, Transcript of calpain 3, humanhuman

TSL 4

Gene CAPN3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-213ENST00000565173 ZRANB1Q9UGI0 708 aa12.51□□□□□ -0.41
CAPN3-213ENST00000565173 CCDC9Q9Y3X0 531 aaKnown RBP12.51□□□□□ -0.41
CAPN3-213ENST00000565173 NRAPQ86VF7 1730 aa12.51□□□□□ -0.41
CAPN3-213ENST00000565173 KRT27Q7Z3Y8 459 aa12.5□□□□□ -0.41
CAPN3-213ENST00000565173 CRYBG1Q9Y4K1 1723 aa12.5□□□□□ -0.41
CAPN3-213ENST00000565173 COL14A1Q05707 1796 aaKnown RBP12.49□□□□□ -0.41
CAPN3-213ENST00000565173 KIAA1210Q9ULL0 1709 aa12.49□□□□□ -0.41
CAPN3-213ENST00000565173 PAK3O75914 559 aaPredicted RBP12.49□□□□□ -0.41
CAPN3-213ENST00000565173 FAM98CQ17RN3 349 aaKnown RBP12.49□□□□□ -0.41
CAPN3-213ENST00000565173 POLR3AO14802 1390 aaPredicted RBP12.48□□□□□ -0.41
CAPN3-213ENST00000565173 PLEKHG3A1L390 1219 aa12.48□□□□□ -0.41
CAPN3-213ENST00000565173 NBPF8Q3BBV2 869 aa12.48□□□□□ -0.41
CAPN3-213ENST00000565173 DEFB132Q7Z7B7 95 aa12.48□□□□□ -0.41
CAPN3-213ENST00000565173 CCDC61Q9Y6R9 512 aa12.48□□□□□ -0.41
CAPN3-213ENST00000565173 ACEP12821 1306 aa12.47□□□□□ -0.41
CAPN3-213ENST00000565173 SPATA31A5Q5VU36 1347 aa12.47□□□□□ -0.41
CAPN3-213ENST00000565173 SPATA31A7Q8IWB4 1347 aa12.47□□□□□ -0.41
CAPN3-213ENST00000565173 ITSN1Q15811 1721 aa12.47□□□□□ -0.41
CAPN3-213ENST00000565173 TOPAZ1Q8N9V7 1692 aa12.46□□□□□ -0.41
CAPN3-213ENST00000565173 KIAA0232Q92628 1395 aa12.45□□□□□ -0.42
CAPN3-213ENST00000565173 NUTM2GQ5VZR2 741 aa12.45□□□□□ -0.42
CAPN3-213ENST00000565173 PRDM11Q9NQV5 511 aa12.45□□□□□ -0.42
CAPN3-213ENST00000565173 ZC3H6P61129 1189 aaKnown RBP12.44□□□□□ -0.42
CAPN3-213ENST00000565173 CHRNA2Q15822 529 aa12.44□□□□□ -0.42
CAPN3-213ENST00000565173 PHRF1Q9P1Y6 1649 aaKnown RBP12.44□□□□□ -0.42
CAPN3-213ENST00000565173 SPATA31A1Q5TZJ5 1347 aa12.43□□□□□ -0.42
CAPN3-213ENST00000565173 A0A0G2JS52 829 aa12.43□□□□□ -0.42
CAPN3-213ENST00000565173 MYT1Q01538 1121 aa12.43□□□□□ -0.42
CAPN3-213ENST00000565173 SF3B2Q13435 895 aaKnown RBP12.43□□□□□ -0.42
CAPN3-213ENST00000565173 FAM182BQ5T319 152 aa12.43□□□□□ -0.42
CAPN3-213ENST00000565173 L3MBTL2Q969R5 705 aa12.43□□□□□ -0.42
CAPN3-213ENST00000565173 CENPJQ9HC77 1338 aaPredicted RBP12.42□□□□□ -0.42
CAPN3-213ENST00000565173 THSD7AQ9UPZ6 1657 aa12.42□□□□□ -0.42
CAPN3-213ENST00000565173 ABTB2Q8N961 1025 aa12.42□□□□□ -0.42
CAPN3-213ENST00000565173 CABP2Q9NPB3 220 aa12.42□□□□□ -0.42
CAPN3-213ENST00000565173 USP19O94966 1318 aa12.41□□□□□ -0.42
CAPN3-213ENST00000565173 SRPK2P78362 688 aaKnown RBP12.41□□□□□ -0.42
CAPN3-213ENST00000565173 PPIP5K1Q6PFW1 1433 aa12.41□□□□□ -0.42
CAPN3-213ENST00000565173 SIN3AQ96ST3 1273 aa12.41□□□□□ -0.42
CAPN3-213ENST00000565173 STRN4Q9NRL3 753 aa12.4□□□□□ -0.42
CAPN3-213ENST00000565173 CPDO75976 1380 aa12.4□□□□□ -0.42
CAPN3-213ENST00000565173 CAMTA1Q9Y6Y1 1673 aa12.39□□□□□ -0.43
CAPN3-213ENST00000565173 GCP02774 474 aa12.39□□□□□ -0.43
CAPN3-213ENST00000565173 BAG6P46379 1132 aa12.39□□□□□ -0.43
CAPN3-213ENST00000565173 CABP1Q9NZU7 370 aa12.39□□□□□ -0.43
CAPN3-213ENST00000565173 NRKQ7Z2Y5 1582 aa12.39□□□□□ -0.43
CAPN3-213ENST00000565173 EN1Q05925 392 aaPredicted RBP12.38□□□□□ -0.43
CAPN3-213ENST00000565173 LARP1Q6PKG0 1096 aaKnown RBP12.38□□□□□ -0.43
CAPN3-213ENST00000565173 BARGINQ6ZT62 677 aa12.38□□□□□ -0.43
CAPN3-213ENST00000565173 NLRP13Q86W25 1043 aa12.38□□□□□ -0.43
CAPN3-213ENST00000565173 LMO7Q8WWI1 1683 aa12.38□□□□□ -0.43
CAPN3-213ENST00000565173 QRICH2Q9H0J4 1663 aa12.38□□□□□ -0.43
CAPN3-213ENST00000565173 SSH2Q76I76 1423 aa12.37□□□□□ -0.43
CAPN3-213ENST00000565173 EVA1CP58658 441 aa12.37□□□□□ -0.43
CAPN3-213ENST00000565173 USP35Q9P2H5 1018 aa12.37□□□□□ -0.43
CAPN3-213ENST00000565173 BRD4O60885 1362 aaPredicted RBP12.37□□□□□ -0.43
CAPN3-213ENST00000565173 TRPM1Q7Z4N2 1603 aa12.36□□□□□ -0.43
CAPN3-213ENST00000565173 DISP2A7MBM2 1401 aa12.36□□□□□ -0.43
CAPN3-213ENST00000565173 USP6P35125 1406 aa12.36□□□□□ -0.43
CAPN3-213ENST00000565173 RGPD1P0DJD0 1748 aa12.35□□□□□ -0.43
CAPN3-213ENST00000565173 NEUROD1Q13562 356 aa12.35□□□□□ -0.43
CAPN3-213ENST00000565173 FAM196AQ6ZSG2 479 aa12.35□□□□□ -0.43
CAPN3-213ENST00000565173 TCP11L2Q8N4U5 519 aa12.35□□□□□ -0.43
CAPN3-213ENST00000565173 TNS1Q9HBL0 1735 aaKnown RBP12.34□□□□□ -0.43
CAPN3-213ENST00000565173 PSDA5PKW4 1024 aaPredicted RBP12.34□□□□□ -0.43
CAPN3-213ENST00000565173 TRIM37O94972 964 aa12.34□□□□□ -0.43
CAPN3-213ENST00000565173 EZH2Q15910 746 aaKnown RBP12.34□□□□□ -0.43
CAPN3-213ENST00000565173 CAMKK2Q96RR4 588 aa12.34□□□□□ -0.43
CAPN3-213ENST00000565173 EVC2Q86UK5 1308 aa12.34□□□□□ -0.43
CAPN3-213ENST00000565173 COL5A2P05997 1499 aaPredicted RBP12.34□□□□□ -0.43
CAPN3-213ENST00000565173 SLIT3O75094 1523 aa12.33□□□□□ -0.44
CAPN3-213ENST00000565173 NLRP6P59044 892 aa12.33□□□□□ -0.44
CAPN3-213ENST00000565173 THRAP3Q9Y2W1 955 aaKnown RBP12.33□□□□□ -0.44
CAPN3-213ENST00000565173 ROCK2O75116 1388 aaKnown RBP12.32□□□□□ -0.44
CAPN3-213ENST00000565173 AATKQ6ZMQ8 1374 aa12.31□□□□□ -0.44
CAPN3-213ENST00000565173 LRP5O75197 1615 aa12.31□□□□□ -0.44
CAPN3-213ENST00000565173 PDE3BQ13370 1112 aa12.31□□□□□ -0.44
CAPN3-213ENST00000565173 ZNF692Q9BU19 519 aaPredicted RBP12.31□□□□□ -0.44
CAPN3-213ENST00000565173 AXIN2Q9Y2T1 843 aa12.31□□□□□ -0.44
CAPN3-213ENST00000565173 PIK3C2AO00443 1686 aa12.31□□□□□ -0.44
CAPN3-213ENST00000565173 TTC21BQ7Z4L5 1316 aa12.31□□□□□ -0.44
CAPN3-213ENST00000565173 CRB1P82279 1406 aa12.3□□□□□ -0.44
CAPN3-213ENST00000565173 CPSF1Q10570 1443 aaKnown RBP12.3□□□□□ -0.44
CAPN3-213ENST00000565173 APBA3O96018 575 aa12.3□□□□□ -0.44
CAPN3-213ENST00000565173 R3HDM1Q15032 1099 aaKnown RBP12.3□□□□□ -0.44
CAPN3-213ENST00000565173 COL18A1P39060 1754 aa12.3□□□□□ -0.44
CAPN3-213ENST00000565173 ARHGEF25Q86VW2 580 aa12.29□□□□□ -0.44
CAPN3-213ENST00000565173 ZBTB7CA1YPR0 619 aa12.28□□□□□ -0.44
CAPN3-213ENST00000565173 PARD3Q8TEW0 1356 aa12.28□□□□□ -0.44
CAPN3-213ENST00000565173 PARP4Q9UKK3 1724 aaKnown RBP12.28□□□□□ -0.44
CAPN3-213ENST00000565173 TTC21AQ8NDW8 1320 aa12.27□□□□□ -0.45
CAPN3-213ENST00000565173 AKAP12Q02952 1782 aa12.27□□□□□ -0.45
CAPN3-213ENST00000565173 PEAK1Q9H792 1746 aa12.26□□□□□ -0.45
CAPN3-213ENST00000565173 TOM1L2Q6ZVM7 507 aa12.26□□□□□ -0.45
CAPN3-213ENST00000565173 KCNH5Q8NCM2 988 aa12.26□□□□□ -0.45
CAPN3-213ENST00000565173 WDR17Q8IZU2 1322 aa12.26□□□□□ -0.45
CAPN3-213ENST00000565173 SBNO2Q9Y2G9 1366 aa12.26□□□□□ -0.45
CAPN3-213ENST00000565173 KTN1Q86UP2 1357 aaKnown RBP12.25□□□□□ -0.45
CAPN3-213ENST00000565173 CD163L1Q9NR16 1453 aa12.25□□□□□ -0.45
CAPN3-213ENST00000565173 RREB1Q92766 1687 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms