RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 NRAPQ86VF7 1730 aa15.6■□□□□ 0.09
VPS39-208ENST00000564994 FAM83GA6ND36 823 aa15.6■□□□□ 0.09
VPS39-208ENST00000564994 CCDC61Q9Y6R9 512 aa15.6■□□□□ 0.09
VPS39-208ENST00000564994 POLR3AO14802 1390 aaPredicted RBP15.6■□□□□ 0.09
VPS39-208ENST00000564994 BRWD3Q6RI45 1802 aa15.59■□□□□ 0.09
VPS39-208ENST00000564994 PAK3O75914 559 aaPredicted RBP15.59■□□□□ 0.09
VPS39-208ENST00000564994 PHRF1Q9P1Y6 1649 aaKnown RBP15.58■□□□□ 0.09
VPS39-208ENST00000564994 COL14A1Q05707 1796 aaKnown RBP15.58■□□□□ 0.08
VPS39-208ENST00000564994 PLEKHG3A1L390 1219 aa15.58■□□□□ 0.08
VPS39-208ENST00000564994 ACEP12821 1306 aa15.58■□□□□ 0.08
VPS39-208ENST00000564994 ATAD2Q6PL18 1390 aa15.58■□□□□ 0.08
VPS39-208ENST00000564994 NBPF8Q3BBV2 869 aa15.57■□□□□ 0.08
VPS39-208ENST00000564994 CABP2Q9NPB3 220 aa15.57■□□□□ 0.08
VPS39-208ENST00000564994 SRPK2P78362 688 aaKnown RBP15.56■□□□□ 0.08
VPS39-208ENST00000564994 VPS72Q15906 364 aa15.56■□□□□ 0.08
VPS39-208ENST00000564994 PPIP5K1Q6PFW1 1433 aa15.55■□□□□ 0.08
VPS39-208ENST00000564994 ROCK2O75116 1388 aaKnown RBP15.55■□□□□ 0.08
VPS39-208ENST00000564994 BTG4Q9NY30 223 aa15.54■□□□□ 0.08
VPS39-208ENST00000564994 NUTM2GQ5VZR2 741 aa15.53■□□□□ 0.08
VPS39-208ENST00000564994 TRIM26Q12899 539 aaPredicted RBP15.52■□□□□ 0.08
VPS39-208ENST00000564994 CCDC9Q9Y3X0 531 aaKnown RBP15.52■□□□□ 0.08
VPS39-208ENST00000564994 KIAA0232Q92628 1395 aa15.51■□□□□ 0.07
VPS39-208ENST00000564994 NRKQ7Z2Y5 1582 aa15.51■□□□□ 0.07
VPS39-208ENST00000564994 ONECUT3O60422 494 aaPredicted RBP15.51■□□□□ 0.07
VPS39-208ENST00000564994 SEPT12Q8IYM1 358 aa15.51■□□□□ 0.07
VPS39-208ENST00000564994 PRDM11Q9NQV5 511 aa15.5■□□□□ 0.07
VPS39-208ENST00000564994 CABP1Q9NZU7 370 aa15.5■□□□□ 0.07
VPS39-208ENST00000564994 EVC2Q86UK5 1308 aa15.49■□□□□ 0.07
VPS39-208ENST00000564994 ZC3H6P61129 1189 aaKnown RBP15.49■□□□□ 0.07
VPS39-208ENST00000564994 CHRNA2Q15822 529 aa15.49■□□□□ 0.07
VPS39-208ENST00000564994 ABTB2Q8N961 1025 aa15.49■□□□□ 0.07
VPS39-208ENST00000564994 AKAP12Q02952 1782 aa15.48■□□□□ 0.07
VPS39-208ENST00000564994 USP6P35125 1406 aa15.48■□□□□ 0.07
VPS39-208ENST00000564994 TONSLQ96HA7 1378 aa15.48■□□□□ 0.07
VPS39-208ENST00000564994 USP19O94966 1318 aa15.47■□□□□ 0.07
VPS39-208ENST00000564994 SPATA31A5Q5VU36 1347 aa15.47■□□□□ 0.07
VPS39-208ENST00000564994 SPATA31A7Q8IWB4 1347 aa15.47■□□□□ 0.07
VPS39-208ENST00000564994 FAM98CQ17RN3 349 aaKnown RBP15.47■□□□□ 0.07
VPS39-208ENST00000564994 SSH2Q76I76 1423 aa15.47■□□□□ 0.07
VPS39-208ENST00000564994 PIK3C2AO00443 1686 aa15.47■□□□□ 0.07
VPS39-208ENST00000564994 LMO7Q8WWI1 1683 aa15.47■□□□□ 0.07
VPS39-208ENST00000564994 BRD4O60885 1362 aaPredicted RBP15.46■□□□□ 0.07
VPS39-208ENST00000564994 THSD7AQ9UPZ6 1657 aa15.45■□□□□ 0.06
VPS39-208ENST00000564994 CAMTA1Q9Y6Y1 1673 aa15.45■□□□□ 0.06
VPS39-208ENST00000564994 CARD11Q9BXL7 1154 aa15.45■□□□□ 0.06
VPS39-208ENST00000564994 KRT27Q7Z3Y8 459 aa15.44■□□□□ 0.06
VPS39-208ENST00000564994 NLRP13Q86W25 1043 aa15.44■□□□□ 0.06
VPS39-208ENST00000564994 CCDC125Q86Z20 511 aa15.44■□□□□ 0.06
VPS39-208ENST00000564994 CPDO75976 1380 aa15.44■□□□□ 0.06
VPS39-208ENST00000564994 SBNO2Q9Y2G9 1366 aa15.44■□□□□ 0.06
VPS39-208ENST00000564994 GCP02774 474 aa15.43■□□□□ 0.06
VPS39-208ENST00000564994 STRN4Q9NRL3 753 aa15.43■□□□□ 0.06
VPS39-208ENST00000564994 SLIT3O75094 1523 aa15.43■□□□□ 0.06
VPS39-208ENST00000564994 BLMP54132 1417 aaPredicted RBP15.43■□□□□ 0.06
VPS39-208ENST00000564994 SPATA31A1Q5TZJ5 1347 aa15.43■□□□□ 0.06
VPS39-208ENST00000564994 A0A0G2JS52 829 aa15.42■□□□□ 0.06
VPS39-208ENST00000564994 MYT1Q01538 1121 aa15.42■□□□□ 0.06
VPS39-208ENST00000564994 MON2Q7Z3U7 1717 aa15.42■□□□□ 0.06
VPS39-208ENST00000564994 NLRP6P59044 892 aa15.41■□□□□ 0.06
VPS39-208ENST00000564994 CPSF1Q10570 1443 aaKnown RBP15.41■□□□□ 0.06
VPS39-208ENST00000564994 SRCAPQ6ZRS2 3230 aa15.4■□□□□ 0.06
VPS39-208ENST00000564994 COL18A1P39060 1754 aa15.4■□□□□ 0.06
VPS39-208ENST00000564994 TTC21BQ7Z4L5 1316 aa15.4■□□□□ 0.06
VPS39-208ENST00000564994 DEFB132Q7Z7B7 95 aa15.39■□□□□ 0.05
VPS39-208ENST00000564994 ZNF692Q9BU19 519 aaPredicted RBP15.39■□□□□ 0.05
VPS39-208ENST00000564994 EVA1CP58658 441 aa15.38■□□□□ 0.05
VPS39-208ENST00000564994 FAM182BQ5T319 152 aa15.38■□□□□ 0.05
VPS39-208ENST00000564994 LARP1Q6PKG0 1096 aaKnown RBP15.38■□□□□ 0.05
VPS39-208ENST00000564994 COL5A2P05997 1499 aaPredicted RBP15.38■□□□□ 0.05
VPS39-208ENST00000564994 CD163L1Q9NR16 1453 aa15.38■□□□□ 0.05
VPS39-208ENST00000564994 RGPD5Q99666 1765 aa15.37■□□□□ 0.05
VPS39-208ENST00000564994 USP35Q9P2H5 1018 aa15.37■□□□□ 0.05
VPS39-208ENST00000564994 KTN1Q86UP2 1357 aaKnown RBP15.36■□□□□ 0.05
VPS39-208ENST00000564994 RGPD1P0DJD0 1748 aa15.36■□□□□ 0.05
VPS39-208ENST00000564994 TNS1Q9HBL0 1735 aaKnown RBP15.35■□□□□ 0.05
VPS39-208ENST00000564994 ZBTB7CA1YPR0 619 aa15.35■□□□□ 0.05
VPS39-208ENST00000564994 BARGINQ6ZT62 677 aa15.35■□□□□ 0.05
VPS39-208ENST00000564994 TTC21AQ8NDW8 1320 aa15.35■□□□□ 0.05
VPS39-208ENST00000564994 AATKQ6ZMQ8 1374 aa15.35■□□□□ 0.05
VPS39-208ENST00000564994 USP54Q70EL1 1684 aa15.35■□□□□ 0.05
VPS39-208ENST00000564994 TESK2Q96S53 571 aa15.34■□□□□ 0.05
VPS39-208ENST00000564994 SLC12A5Q9H2X9 1139 aa15.34■□□□□ 0.05
VPS39-208ENST00000564994 NFAT5O94916 1531 aa15.33■□□□□ 0.05
VPS39-208ENST00000564994 ST20-MTHFSA0A0A6YYL1 179 aa15.33■□□□□ 0.04
VPS39-208ENST00000564994 SF3B2Q13435 895 aaKnown RBP15.33■□□□□ 0.04
VPS39-208ENST00000564994 TCP11L2Q8N4U5 519 aa15.33■□□□□ 0.04
VPS39-208ENST00000564994 TMC1Q8TDI8 760 aa15.33■□□□□ 0.04
VPS39-208ENST00000564994 ZRANB1Q9UGI0 708 aa15.33■□□□□ 0.04
VPS39-208ENST00000564994 AXIN2Q9Y2T1 843 aa15.33■□□□□ 0.04
VPS39-208ENST00000564994 PARP4Q9UKK3 1724 aaKnown RBP15.33■□□□□ 0.04
VPS39-208ENST00000564994 ARHGEF25Q86VW2 580 aa15.32■□□□□ 0.04
VPS39-208ENST00000564994 CRB1P82279 1406 aa15.32■□□□□ 0.04
VPS39-208ENST00000564994 WNK3Q9BYP7 1800 aa15.31■□□□□ 0.04
VPS39-208ENST00000564994 SOX12O15370 315 aa15.31■□□□□ 0.04
VPS39-208ENST00000564994 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.31■□□□□ 0.04
VPS39-208ENST00000564994 KCNH5Q8NCM2 988 aa15.31■□□□□ 0.04
VPS39-208ENST00000564994 PUS7Q96PZ0 661 aaKnown RBP15.31■□□□□ 0.04
VPS39-208ENST00000564994 A0A1W2PP64 1363 aa15.3■□□□□ 0.04
VPS39-208ENST00000564994 USP31Q70CQ4 1352 aa15.3■□□□□ 0.04
VPS39-208ENST00000564994 NME9Q86XW9 330 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms