RNA–Protein interactions for RNA: ENST00000564587.5

COMMD4-210, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-210ENST00000564587 COG3Q96JB2 828 aa20.66■□□□□ 0.9
COMMD4-210ENST00000564587 USP6P35125 1406 aa20.66■□□□□ 0.9
COMMD4-210ENST00000564587 NALCNQ8IZF0 1738 aa20.65■□□□□ 0.9
COMMD4-210ENST00000564587 SMG6Q86US8 1419 aaKnown RBP20.65■□□□□ 0.9
COMMD4-210ENST00000564587 AATKQ6ZMQ8 1374 aa20.65■□□□□ 0.9
COMMD4-210ENST00000564587 TTC21BQ7Z4L5 1316 aa20.65■□□□□ 0.9
COMMD4-210ENST00000564587 NUDCQ9Y266 331 aa20.65■□□□□ 0.9
COMMD4-210ENST00000564587 NCOA3Q9Y6Q9 1424 aa20.64■□□□□ 0.89
COMMD4-210ENST00000564587 NRKQ7Z2Y5 1582 aa20.63■□□□□ 0.89
COMMD4-210ENST00000564587 NGDNQ8NEJ9 315 aaKnown RBP20.63■□□□□ 0.89
COMMD4-210ENST00000564587 NUTM2FA1L443 756 aa20.62■□□□□ 0.89
COMMD4-210ENST00000564587 SSH2Q76I76 1423 aa20.61■□□□□ 0.89
COMMD4-210ENST00000564587 SHPRHQ149N8 1683 aa20.61■□□□□ 0.89
COMMD4-210ENST00000564587 NEFLP07196 543 aa20.61■□□□□ 0.89
COMMD4-210ENST00000564587 PROSER2Q86WR7 435 aaPredicted RBP20.61■□□□□ 0.89
COMMD4-210ENST00000564587 NME9Q86XW9 330 aa20.61■□□□□ 0.89
COMMD4-210ENST00000564587 PNPLA6Q8IY17 1366 aa20.6■□□□□ 0.89
COMMD4-210ENST00000564587 RGPD8O14715 1765 aaPredicted RBP20.6■□□□□ 0.89
COMMD4-210ENST00000564587 C14orf37Q86TY3 774 aa20.6■□□□□ 0.89
COMMD4-210ENST00000564587 NCBP3Q53F19 620 aaKnown RBP20.59■□□□□ 0.89
COMMD4-210ENST00000564587 PNNQ9H307 717 aaKnown RBP20.59■□□□□ 0.89
COMMD4-210ENST00000564587 PMFBP1Q8TBY8 1022 aa20.57■□□□□ 0.88
COMMD4-210ENST00000564587 RUNDC1Q96C34 613 aa20.57■□□□□ 0.88
COMMD4-210ENST00000564587 PHF8Q9UPP1 1060 aa20.57■□□□□ 0.88
COMMD4-210ENST00000564587 USP31Q70CQ4 1352 aa20.57■□□□□ 0.88
COMMD4-210ENST00000564587 COL3A1P02461 1466 aaPredicted RBP20.56■□□□□ 0.88
COMMD4-210ENST00000564587 MAP2P11137 1827 aaKnown RBP20.56■□□□□ 0.88
COMMD4-210ENST00000564587 DIAPH1O60610 1272 aaKnown RBP20.56■□□□□ 0.88
COMMD4-210ENST00000564587 C19orf44Q9H6X5 657 aa20.56■□□□□ 0.88
COMMD4-210ENST00000564587 POLKQ9UBT6 870 aa20.56■□□□□ 0.88
COMMD4-210ENST00000564587 OVOS2A0A0J9YW53 1432 aa20.55■□□□□ 0.88
COMMD4-210ENST00000564587 OVOS2Q6IE36 1432 aa20.55■□□□□ 0.88
COMMD4-210ENST00000564587 CDK12Q9NYV4 1490 aaPredicted RBP20.55■□□□□ 0.88
COMMD4-210ENST00000564587 DCCP43146 1447 aa20.54■□□□□ 0.88
COMMD4-210ENST00000564587 U2AF1L5P0DN76 240 aaPredicted RBP20.52■□□□□ 0.88
COMMD4-210ENST00000564587 U2AF1Q01081 240 aaKnown RBP eCLIP20.52■□□□□ 0.88
COMMD4-210ENST00000564587 LRRC7Q96NW7 1537 aa20.52■□□□□ 0.87
COMMD4-210ENST00000564587 APAF1O14727 1248 aa20.51■□□□□ 0.87
COMMD4-210ENST00000564587 CCDC146Q8IYE0 955 aa20.5■□□□□ 0.87
COMMD4-210ENST00000564587 SALL2Q9Y467 1007 aaPredicted RBP20.5■□□□□ 0.87
COMMD4-210ENST00000564587 SUPT16HQ9Y5B9 1047 aaKnown RBP20.5■□□□□ 0.87
COMMD4-210ENST00000564587 USP54Q70EL1 1684 aa20.5■□□□□ 0.87
COMMD4-210ENST00000564587 ZNF521Q96K83 1311 aa20.5■□□□□ 0.87
COMMD4-210ENST00000564587 STRCQ7RTU9 1775 aa20.49■□□□□ 0.87
COMMD4-210ENST00000564587 ZRANB1Q9UGI0 708 aa20.49■□□□□ 0.87
COMMD4-210ENST00000564587 TMEM94Q12767 1356 aa20.48■□□□□ 0.87
COMMD4-210ENST00000564587 UBAP1LF5GYI3 381 aa20.48■□□□□ 0.87
COMMD4-210ENST00000564587 U2SURPO15042 1029 aaKnown RBP20.48■□□□□ 0.87
COMMD4-210ENST00000564587 ATF3P18847 181 aa20.48■□□□□ 0.87
COMMD4-210ENST00000564587 GOLGA2Q08379 1002 aa20.48■□□□□ 0.87
COMMD4-210ENST00000564587 ESCO1Q5FWF5 840 aa20.48■□□□□ 0.87
COMMD4-210ENST00000564587 ERICH6BQ5W0A0 696 aa20.48■□□□□ 0.87
COMMD4-210ENST00000564587 KIF1AQ12756 1690 aa20.48■□□□□ 0.87
COMMD4-210ENST00000564587 FCHSD2O94868 740 aa20.47■□□□□ 0.87
COMMD4-210ENST00000564587 CCDC27Q2M243 656 aa20.47■□□□□ 0.87
COMMD4-210ENST00000564587 RBM33Q96EV2 1170 aaKnown RBP20.47■□□□□ 0.87
COMMD4-210ENST00000564587 PPM1GO15355 546 aaPredicted RBP20.46■□□□□ 0.87
COMMD4-210ENST00000564587 NEFMP07197 916 aa20.46■□□□□ 0.87
COMMD4-210ENST00000564587 PSME1Q06323 249 aa20.46■□□□□ 0.87
COMMD4-210ENST00000564587 CADPS2Q86UW7 1296 aa20.46■□□□□ 0.87
COMMD4-210ENST00000564587 STRCP1A6NGW2 1772 aa20.46■□□□□ 0.87
COMMD4-210ENST00000564587 KIF24Q5T7B8 1368 aa20.46■□□□□ 0.87
COMMD4-210ENST00000564587 IQSEC2Q5JU85 1478 aa20.45■□□□□ 0.86
COMMD4-210ENST00000564587 EMILIN1Q9Y6C2 1016 aa20.45■□□□□ 0.86
COMMD4-210ENST00000564587 PIK3C2AO00443 1686 aa20.45■□□□□ 0.86
COMMD4-210ENST00000564587 C1orf167Q5SNV9 1468 aa20.44■□□□□ 0.86
COMMD4-210ENST00000564587 NLRP6P59044 892 aa20.44■□□□□ 0.86
COMMD4-210ENST00000564587 TCP11L2Q8N4U5 519 aa20.44■□□□□ 0.86
COMMD4-210ENST00000564587 MAPK8IP3Q9UPT6 1336 aa20.44■□□□□ 0.86
COMMD4-210ENST00000564587 MSH6P52701 1360 aa20.44■□□□□ 0.86
COMMD4-210ENST00000564587 FKBP8Q14318 412 aa20.43■□□□□ 0.86
COMMD4-210ENST00000564587 ABTB2Q8N961 1025 aa20.43■□□□□ 0.86
COMMD4-210ENST00000564587 SENP3-EIF4A1A0A087X0R7 540 aa20.42■□□□□ 0.86
COMMD4-210ENST00000564587 E9PSI1 815 aa20.42■□□□□ 0.86
COMMD4-210ENST00000564587 IL13P35225 146 aa20.42■□□□□ 0.86
COMMD4-210ENST00000564587 WDR63Q8IWG1 891 aa20.42■□□□□ 0.86
COMMD4-210ENST00000564587 RRS1Q15050 365 aaKnown RBP20.41■□□□□ 0.86
COMMD4-210ENST00000564587 PLEKHF1Q96S99 279 aa20.41■□□□□ 0.86
COMMD4-210ENST00000564587 PHF23Q9BUL5 403 aaPredicted RBP20.41■□□□□ 0.86
COMMD4-210ENST00000564587 RNF123Q5XPI4 1314 aa20.41■□□□□ 0.86
COMMD4-210ENST00000564587 SBNO1A3KN83 1393 aa20.4■□□□□ 0.86
COMMD4-210ENST00000564587 PAK3O75914 559 aaPredicted RBP20.4■□□□□ 0.86
COMMD4-210ENST00000564587 MST1RQ04912 1400 aa20.4■□□□□ 0.86
COMMD4-210ENST00000564587 SLFN5Q08AF3 891 aa20.4■□□□□ 0.86
COMMD4-210ENST00000564587 WWC1Q8IX03 1113 aa20.4■□□□□ 0.86
COMMD4-210ENST00000564587 LTBP4Q8N2S1 1624 aa20.4■□□□□ 0.86
COMMD4-210ENST00000564587 CDCA7LQ96GN5 454 aa20.4■□□□□ 0.86
COMMD4-210ENST00000564587 FBLN1P23142 703 aa20.39■□□□□ 0.85
COMMD4-210ENST00000564587 TRMT2AQ8IZ69 625 aaKnown RBP20.39■□□□□ 0.85
COMMD4-210ENST00000564587 FLT4P35916 1363 aa20.38■□□□□ 0.85
COMMD4-210ENST00000564587 KCNH5Q8NCM2 988 aa20.38■□□□□ 0.85
COMMD4-210ENST00000564587 ORAI2Q96SN7 254 aa20.38■□□□□ 0.85
COMMD4-210ENST00000564587 RCAN3Q9UKA8 241 aa20.38■□□□□ 0.85
COMMD4-210ENST00000564587 DUSP27Q5VZP5 1158 aa20.37■□□□□ 0.85
COMMD4-210ENST00000564587 RSPH6AQ9H0K4 717 aa20.37■□□□□ 0.85
COMMD4-210ENST00000564587 RTL1A6NKG5 1358 aa20.35■□□□□ 0.85
COMMD4-210ENST00000564587 MAP3K19Q56UN5 1328 aa20.35■□□□□ 0.85
COMMD4-210ENST00000564587 TMPOP42166 694 aaKnown RBP20.35■□□□□ 0.85
COMMD4-210ENST00000564587 AMPHP49418 695 aa20.35■□□□□ 0.85
COMMD4-210ENST00000564587 MARF1Q9Y4F3 1742 aaKnown RBP20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms