RNA–Protein interactions for RNA: ENST00000563672.5

CMTM3-206, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 4

Gene CMTM3, Length 460 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-206ENST00000563672 PUS7Q96PZ0 661 aaKnown RBP28.6■■■□□ 2.17
CMTM3-206ENST00000563672 SLC24A1O60721 1099 aa28.59■■■□□ 2.17
CMTM3-206ENST00000563672 BRD4O60885 1362 aaPredicted RBP28.58■■■□□ 2.17
CMTM3-206ENST00000563672 PLEKHG5O94827 1062 aa28.56■■■□□ 2.16
CMTM3-206ENST00000563672 HAP1P54257 671 aaPredicted RBP28.55■■■□□ 2.16
CMTM3-206ENST00000563672 USP6P35125 1406 aa28.54■■■□□ 2.16
CMTM3-206ENST00000563672 ZNF692Q9BU19 519 aaPredicted RBP28.54■■■□□ 2.16
CMTM3-206ENST00000563672 SSH2Q76I76 1423 aa28.52■■■□□ 2.16
CMTM3-206ENST00000563672 USP21Q9UK80 565 aa28.52■■■□□ 2.16
CMTM3-206ENST00000563672 CPSF1Q10570 1443 aaKnown RBP28.52■■■□□ 2.16
CMTM3-206ENST00000563672 ABTB2Q8N961 1025 aa28.51■■■□□ 2.15
CMTM3-206ENST00000563672 QTRT2Q9H974 415 aaKnown RBP28.51■■■□□ 2.15
CMTM3-206ENST00000563672 MARF1Q9Y4F3 1742 aaKnown RBP28.5■■■□□ 2.15
CMTM3-206ENST00000563672 SOCS7O14512 581 aa28.5■■■□□ 2.15
CMTM3-206ENST00000563672 ABCA3Q99758 1704 aa28.49■■■□□ 2.15
CMTM3-206ENST00000563672 NUTM2GQ5VZR2 741 aa28.49■■■□□ 2.15
CMTM3-206ENST00000563672 BCL9LQ86UU0 1499 aa28.48■■■□□ 2.15
CMTM3-206ENST00000563672 SLC12A5Q9H2X9 1139 aa28.48■■■□□ 2.15
CMTM3-206ENST00000563672 RXRBP28702 533 aa28.47■■■□□ 2.15
CMTM3-206ENST00000563672 TMF1P82094 1093 aa28.47■■■□□ 2.15
CMTM3-206ENST00000563672 TMC1Q8TDI8 760 aa28.47■■■□□ 2.15
CMTM3-206ENST00000563672 SLIT2O94813 1529 aa28.47■■■□□ 2.15
CMTM3-206ENST00000563672 FAM83GA6ND36 823 aa28.46■■■□□ 2.15
CMTM3-206ENST00000563672 NLRP13Q86W25 1043 aa28.45■■■□□ 2.14
CMTM3-206ENST00000563672 TRPC5Q9UL62 973 aaPredicted RBP28.45■■■□□ 2.14
CMTM3-206ENST00000563672 CRYBG1Q9Y4K1 1723 aa28.45■■■□□ 2.14
CMTM3-206ENST00000563672 CD163L1Q9NR16 1453 aa28.45■■■□□ 2.14
CMTM3-206ENST00000563672 USP19O94966 1318 aa28.44■■■□□ 2.14
CMTM3-206ENST00000563672 TTC21BQ7Z4L5 1316 aa28.44■■■□□ 2.14
CMTM3-206ENST00000563672 KTN1Q86UP2 1357 aaKnown RBP28.44■■■□□ 2.14
CMTM3-206ENST00000563672 RBM6P78332 1123 aaKnown RBP28.43■■■□□ 2.14
CMTM3-206ENST00000563672 UNC5CLQ8IV45 518 aa28.43■■■□□ 2.14
CMTM3-206ENST00000563672 ATRNO75882 1429 aa28.43■■■□□ 2.14
CMTM3-206ENST00000563672 AKAP12Q02952 1782 aa28.42■■■□□ 2.14
CMTM3-206ENST00000563672 NINLQ9Y2I6 1382 aa28.41■■■□□ 2.14
CMTM3-206ENST00000563672 TTC21AQ8NDW8 1320 aa28.41■■■□□ 2.14
CMTM3-206ENST00000563672 NLRP6P59044 892 aa28.4■■■□□ 2.14
CMTM3-206ENST00000563672 HDGFL2Q7Z4V5 671 aaPredicted RBP28.4■■■□□ 2.14
CMTM3-206ENST00000563672 TERF2IPQ9NYB0 399 aa28.4■■■□□ 2.14
CMTM3-206ENST00000563672 EIF4G2P78344 907 aaKnown RBP eCLIP28.39■■■□□ 2.14
CMTM3-206ENST00000563672 CDCA8Q53HL2 280 aa28.39■■■□□ 2.14
CMTM3-206ENST00000563672 CDK12Q9NYV4 1490 aaPredicted RBP28.38■■■□□ 2.13
CMTM3-206ENST00000563672 PHRF1Q9P1Y6 1649 aaKnown RBP28.37■■■□□ 2.13
CMTM3-206ENST00000563672 GCP02774 474 aa28.37■■■□□ 2.13
CMTM3-206ENST00000563672 PRDM11Q9NQV5 511 aa28.37■■■□□ 2.13
CMTM3-206ENST00000563672 A0A1W2PP64 1363 aa28.37■■■□□ 2.13
CMTM3-206ENST00000563672 KIAA0232Q92628 1395 aa28.37■■■□□ 2.13
CMTM3-206ENST00000563672 HSPA5P11021 654 aaKnown RBP28.36■■■□□ 2.13
CMTM3-206ENST00000563672 ZC3H6P61129 1189 aaKnown RBP28.36■■■□□ 2.13
CMTM3-206ENST00000563672 NRKQ7Z2Y5 1582 aa28.35■■■□□ 2.13
CMTM3-206ENST00000563672 MON2Q7Z3U7 1717 aa28.35■■■□□ 2.13
CMTM3-206ENST00000563672 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.35■■■□□ 2.13
CMTM3-206ENST00000563672 GJD4Q96KN9 370 aaPredicted RBP28.34■■■□□ 2.13
CMTM3-206ENST00000563672 BTG4Q9NY30 223 aa28.34■■■□□ 2.13
CMTM3-206ENST00000563672 PIK3C2AO00443 1686 aa28.34■■■□□ 2.13
CMTM3-206ENST00000563672 COL14A1Q05707 1796 aaKnown RBP28.33■■■□□ 2.13
CMTM3-206ENST00000563672 VPS72Q15906 364 aa28.33■■■□□ 2.13
CMTM3-206ENST00000563672 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.33■■■□□ 2.13
CMTM3-206ENST00000563672 CPDO75976 1380 aa28.33■■■□□ 2.13
CMTM3-206ENST00000563672 EDC4Q6P2E9 1401 aaKnown RBP28.33■■■□□ 2.13
CMTM3-206ENST00000563672 PLCH1Q4KWH8 1693 aa28.32■■■□□ 2.12
CMTM3-206ENST00000563672 NWD2Q9ULI1 1742 aa28.32■■■□□ 2.12
CMTM3-206ENST00000563672 SLIT3O75094 1523 aa28.32■■■□□ 2.12
CMTM3-206ENST00000563672 CHRNA2Q15822 529 aa28.31■■■□□ 2.12
CMTM3-206ENST00000563672 USP31Q70CQ4 1352 aa28.3■■■□□ 2.12
CMTM3-206ENST00000563672 RGS12O14924 1447 aa28.29■■■□□ 2.12
CMTM3-206ENST00000563672 ANKRD36BQ8N2N9 1353 aa28.29■■■□□ 2.12
CMTM3-206ENST00000563672 NME9Q86XW9 330 aa28.28■■■□□ 2.12
CMTM3-206ENST00000563672 ZRANB1Q9UGI0 708 aa28.27■■■□□ 2.12
CMTM3-206ENST00000563672 KCNH5Q8NCM2 988 aa28.26■■■□□ 2.11
CMTM3-206ENST00000563672 NRAPQ86VF7 1730 aa28.24■■■□□ 2.11
CMTM3-206ENST00000563672 GLI3P10071 1580 aa28.24■■■□□ 2.11
CMTM3-206ENST00000563672 CCDC9Q9Y3X0 531 aaKnown RBP28.22■■■□□ 2.11
CMTM3-206ENST00000563672 ARHGEF25Q86VW2 580 aa28.21■■■□□ 2.11
CMTM3-206ENST00000563672 CAMTA1Q9Y6Y1 1673 aa28.2■■■□□ 2.11
CMTM3-206ENST00000563672 ONECUT3O60422 494 aaPredicted RBP28.2■■■□□ 2.1
CMTM3-206ENST00000563672 AATKQ6ZMQ8 1374 aa28.2■■■□□ 2.1
CMTM3-206ENST00000563672 SPATA31A5Q5VU36 1347 aa28.19■■■□□ 2.1
CMTM3-206ENST00000563672 SPATA31A7Q8IWB4 1347 aa28.19■■■□□ 2.1
CMTM3-206ENST00000563672 USP54Q70EL1 1684 aa28.19■■■□□ 2.1
CMTM3-206ENST00000563672 LMO7Q8WWI1 1683 aa28.19■■■□□ 2.1
CMTM3-206ENST00000563672 SOX12O15370 315 aa28.18■■■□□ 2.1
CMTM3-206ENST00000563672 NFAT5O94916 1531 aa28.18■■■□□ 2.1
CMTM3-206ENST00000563672 OVOS2A0A0J9YW53 1432 aa28.18■■■□□ 2.1
CMTM3-206ENST00000563672 OVOS2Q6IE36 1432 aa28.18■■■□□ 2.1
CMTM3-206ENST00000563672 C11orf95C9JLR9 678 aaPredicted RBP28.17■■■□□ 2.1
CMTM3-206ENST00000563672 CARD14Q9BXL6 1004 aa28.17■■■□□ 2.1
CMTM3-206ENST00000563672 STRN4Q9NRL3 753 aa28.17■■■□□ 2.1
CMTM3-206ENST00000563672 MYOM1P52179 1685 aa28.16■■■□□ 2.1
CMTM3-206ENST00000563672 ZBTB7CA1YPR0 619 aa28.16■■■□□ 2.1
CMTM3-206ENST00000563672 EVA1CP58658 441 aa28.16■■■□□ 2.1
CMTM3-206ENST00000563672 FYB1O15117 783 aa28.14■■■□□ 2.1
CMTM3-206ENST00000563672 POLR3GLQ9BT43 218 aa28.14■■■□□ 2.1
CMTM3-206ENST00000563672 SPATA31A1Q5TZJ5 1347 aa28.14■■■□□ 2.09
CMTM3-206ENST00000563672 SEPT12Q8IYM1 358 aa28.13■■■□□ 2.09
CMTM3-206ENST00000563672 AXIN2Q9Y2T1 843 aa28.13■■■□□ 2.09
CMTM3-206ENST00000563672 LARP1Q6PKG0 1096 aaKnown RBP28.12■■■□□ 2.09
CMTM3-206ENST00000563672 COG3Q96JB2 828 aa28.12■■■□□ 2.09
CMTM3-206ENST00000563672 COL5A2P05997 1499 aaPredicted RBP28.12■■■□□ 2.09
CMTM3-206ENST00000563672 COL18A1P39060 1754 aa28.11■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 123.5 ms