RNA–Protein interactions for RNA: ENST00000563455.1

SMPD3-205, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-205ENST00000563455 USP21Q9UK80 565 aa18.65■□□□□ 0.58
SMPD3-205ENST00000563455 CGNL1Q0VF96 1302 aa18.65■□□□□ 0.58
SMPD3-205ENST00000563455 KNDC1Q76NI1 1749 aa18.65■□□□□ 0.58
SMPD3-205ENST00000563455 NALCNQ8IZF0 1738 aa18.65■□□□□ 0.58
SMPD3-205ENST00000563455 PNISRQ8TF01 805 aaKnown RBP18.64■□□□□ 0.57
SMPD3-205ENST00000563455 TULP4Q9NRJ4 1543 aa18.64■□□□□ 0.57
SMPD3-205ENST00000563455 MYOM1P52179 1685 aa18.63■□□□□ 0.57
SMPD3-205ENST00000563455 FNBP4Q8N3X1 1017 aaPredicted RBP18.63■□□□□ 0.57
SMPD3-205ENST00000563455 PSME1Q06323 249 aa18.62■□□□□ 0.57
SMPD3-205ENST00000563455 CC2D1BQ5T0F9 858 aaKnown RBP18.62■□□□□ 0.57
SMPD3-205ENST00000563455 HDGFL2Q7Z4V5 671 aaPredicted RBP18.62■□□□□ 0.57
SMPD3-205ENST00000563455 CDK19Q9BWU1 502 aa18.62■□□□□ 0.57
SMPD3-205ENST00000563455 CDC42BPGQ6DT37 1551 aa18.61■□□□□ 0.57
SMPD3-205ENST00000563455 NUTM2FA1L443 756 aa18.61■□□□□ 0.57
SMPD3-205ENST00000563455 USP32Q8NFA0 1604 aa18.6■□□□□ 0.57
SMPD3-205ENST00000563455 MINK1Q8N4C8 1332 aaPredicted RBP18.6■□□□□ 0.57
SMPD3-205ENST00000563455 WASLO00401 505 aaPredicted RBP18.6■□□□□ 0.57
SMPD3-205ENST00000563455 HNRNPUQ00839 825 aaKnown RBP eCLIP18.6■□□□□ 0.57
SMPD3-205ENST00000563455 FAM9BQ8IZU0 186 aa18.6■□□□□ 0.57
SMPD3-205ENST00000563455 SLC12A5Q9H2X9 1139 aa18.6■□□□□ 0.57
SMPD3-205ENST00000563455 ZBED9Q6R2W3 1325 aa18.59■□□□□ 0.57
SMPD3-205ENST00000563455 CARD14Q9BXL6 1004 aa18.58■□□□□ 0.56
SMPD3-205ENST00000563455 CABP2Q9NPB3 220 aa18.58■□□□□ 0.56
SMPD3-205ENST00000563455 PPP2R1AP30153 589 aa18.57■□□□□ 0.56
SMPD3-205ENST00000563455 SAFB2Q14151 953 aaKnown RBP eCLIP18.57■□□□□ 0.56
SMPD3-205ENST00000563455 KRT28Q7Z3Y7 464 aa18.57■□□□□ 0.56
SMPD3-205ENST00000563455 ZNF692Q9BU19 519 aaPredicted RBP18.57■□□□□ 0.56
SMPD3-205ENST00000563455 ATP7BP35670 1465 aa18.57■□□□□ 0.56
SMPD3-205ENST00000563455 HAP1P54257 671 aaPredicted RBP18.56■□□□□ 0.56
SMPD3-205ENST00000563455 CCDC184Q52MB2 194 aa18.56■□□□□ 0.56
SMPD3-205ENST00000563455 CCDC61Q9Y6R9 512 aa18.56■□□□□ 0.56
SMPD3-205ENST00000563455 NSD3Q9BZ95 1437 aa18.56■□□□□ 0.56
SMPD3-205ENST00000563455 XPCQ01831 940 aaPredicted RBP18.55■□□□□ 0.56
SMPD3-205ENST00000563455 NGEFQ8N5V2 710 aa18.55■□□□□ 0.56
SMPD3-205ENST00000563455 PHF8Q9UPP1 1060 aa18.55■□□□□ 0.56
SMPD3-205ENST00000563455 SPATA31A3Q5VYP0 1347 aa18.54■□□□□ 0.56
SMPD3-205ENST00000563455 MORC1Q86VD1 984 aa18.54■□□□□ 0.56
SMPD3-205ENST00000563455 PLEKHH1Q9ULM0 1364 aa18.54■□□□□ 0.56
SMPD3-205ENST00000563455 ADGRB2O60241 1585 aa18.53■□□□□ 0.56
SMPD3-205ENST00000563455 PXDNQ92626 1479 aa18.52■□□□□ 0.56
SMPD3-205ENST00000563455 CCDC125Q86Z20 511 aa18.52■□□□□ 0.56
SMPD3-205ENST00000563455 GJD4Q96KN9 370 aaPredicted RBP18.51■□□□□ 0.55
SMPD3-205ENST00000563455 RGS12O14924 1447 aa18.5■□□□□ 0.55
SMPD3-205ENST00000563455 WDR43Q15061 677 aaKnown RBP eCLIP18.5■□□□□ 0.55
SMPD3-205ENST00000563455 NUDT16Q96DE0 195 aaKnown RBP18.5■□□□□ 0.55
SMPD3-205ENST00000563455 CFAP53Q96M91 514 aa18.5■□□□□ 0.55
SMPD3-205ENST00000563455 A0A1W2PP64 1363 aa18.5■□□□□ 0.55
SMPD3-205ENST00000563455 POLR3AO14802 1390 aaPredicted RBP18.5■□□□□ 0.55
SMPD3-205ENST00000563455 PDE3BQ13370 1112 aa18.49■□□□□ 0.55
SMPD3-205ENST00000563455 CNGB1Q14028 1251 aaPredicted RBP18.49■□□□□ 0.55
SMPD3-205ENST00000563455 UNC5CLQ8IV45 518 aa18.49■□□□□ 0.55
SMPD3-205ENST00000563455 CABP1Q9NZU7 370 aa18.49■□□□□ 0.55
SMPD3-205ENST00000563455 COL22A1Q8NFW1 1626 aaPredicted RBP18.49■□□□□ 0.55
SMPD3-205ENST00000563455 ARHGEF10O15013 1369 aa18.48■□□□□ 0.55
SMPD3-205ENST00000563455 LMOD2Q6P5Q4 547 aa18.48■□□□□ 0.55
SMPD3-205ENST00000563455 ATRNO75882 1429 aa18.48■□□□□ 0.55
SMPD3-205ENST00000563455 SBNO1A3KN83 1393 aa18.47■□□□□ 0.55
SMPD3-205ENST00000563455 PLEKHG3A1L390 1219 aa18.47■□□□□ 0.55
SMPD3-205ENST00000563455 CPSF1Q10570 1443 aaKnown RBP18.47■□□□□ 0.55
SMPD3-205ENST00000563455 EDC4Q6P2E9 1401 aaKnown RBP18.46■□□□□ 0.55
SMPD3-205ENST00000563455 ANKARQ7Z5J8 1434 aa18.46■□□□□ 0.55
SMPD3-205ENST00000563455 KIF1AQ12756 1690 aa18.45■□□□□ 0.54
SMPD3-205ENST00000563455 PPIP5K1Q6PFW1 1433 aa18.45■□□□□ 0.54
SMPD3-205ENST00000563455 BCL9LQ86UU0 1499 aa18.45■□□□□ 0.54
SMPD3-205ENST00000563455 TNS3Q68CZ2 1445 aa18.43■□□□□ 0.54
SMPD3-205ENST00000563455 NCBP3Q53F19 620 aaKnown RBP18.43■□□□□ 0.54
SMPD3-205ENST00000563455 PMFBP1Q8TBY8 1022 aa18.43■□□□□ 0.54
SMPD3-205ENST00000563455 CD163L1Q9NR16 1453 aa18.43■□□□□ 0.54
SMPD3-205ENST00000563455 BLMP54132 1417 aaPredicted RBP18.42■□□□□ 0.54
SMPD3-205ENST00000563455 FYB1O15117 783 aa18.42■□□□□ 0.54
SMPD3-205ENST00000563455 GTF3C3Q9Y5Q9 886 aa18.42■□□□□ 0.54
SMPD3-205ENST00000563455 FMN2Q9NZ56 1722 aa18.42■□□□□ 0.54
SMPD3-205ENST00000563455 VPS72Q15906 364 aa18.41■□□□□ 0.54
SMPD3-205ENST00000563455 NGDNQ8NEJ9 315 aaKnown RBP18.41■□□□□ 0.54
SMPD3-205ENST00000563455 CCDC9Q9Y3X0 531 aaKnown RBP18.4■□□□□ 0.54
SMPD3-205ENST00000563455 NEFLP07196 543 aa18.39■□□□□ 0.53
SMPD3-205ENST00000563455 CABLES1Q8TDN4 633 aa18.39■□□□□ 0.53
SMPD3-205ENST00000563455 PNNQ9H307 717 aaKnown RBP18.39■□□□□ 0.53
SMPD3-205ENST00000563455 ZRANB1Q9UGI0 708 aa18.39■□□□□ 0.53
SMPD3-205ENST00000563455 NUDCQ9Y266 331 aa18.39■□□□□ 0.53
SMPD3-205ENST00000563455 SLIT2O94813 1529 aa18.39■□□□□ 0.53
SMPD3-205ENST00000563455 SF3B2Q13435 895 aaKnown RBP18.37■□□□□ 0.53
SMPD3-205ENST00000563455 TTC21AQ8NDW8 1320 aa18.37■□□□□ 0.53
SMPD3-205ENST00000563455 PLEKHG5O94827 1062 aa18.36■□□□□ 0.53
SMPD3-205ENST00000563455 AATKQ6ZMQ8 1374 aa18.36■□□□□ 0.53
SMPD3-205ENST00000563455 ADAMTS8Q9UP79 889 aa18.36■□□□□ 0.53
SMPD3-205ENST00000563455 SMG6Q86US8 1419 aaKnown RBP18.35■□□□□ 0.53
SMPD3-205ENST00000563455 ONECUT3O60422 494 aaPredicted RBP18.35■□□□□ 0.53
SMPD3-205ENST00000563455 PAK3O75914 559 aaPredicted RBP18.35■□□□□ 0.53
SMPD3-205ENST00000563455 ERICH6BQ5W0A0 696 aa18.35■□□□□ 0.53
SMPD3-205ENST00000563455 FAM83GA6ND36 823 aa18.34■□□□□ 0.53
SMPD3-205ENST00000563455 MTHFSP49914 203 aa18.34■□□□□ 0.53
SMPD3-205ENST00000563455 SEPT12Q8IYM1 358 aa18.34■□□□□ 0.53
SMPD3-205ENST00000563455 COG3Q96JB2 828 aa18.34■□□□□ 0.53
SMPD3-205ENST00000563455 PRR36Q9H6K5 1346 aa18.33■□□□□ 0.53
SMPD3-205ENST00000563455 ANKRD26Q9UPS8 1709 aa18.32■□□□□ 0.52
SMPD3-205ENST00000563455 GGNBP2Q9H3C7 697 aa18.32■□□□□ 0.52
SMPD3-205ENST00000563455 ITSN1Q15811 1721 aa18.32■□□□□ 0.52
SMPD3-205ENST00000563455 ACEP12821 1306 aa18.31■□□□□ 0.52
SMPD3-205ENST00000563455 A0A0G2JS52 829 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms