RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 KIAA1210Q9ULL0 1709 aa22.83■■□□□ 1.25
CLK3-211ENST00000563297 CCDC61Q9Y6R9 512 aa22.81■■□□□ 1.24
CLK3-211ENST00000563297 ZRANB1Q9UGI0 708 aa22.8■■□□□ 1.24
CLK3-211ENST00000563297 ITSN1Q15811 1721 aa22.79■■□□□ 1.24
CLK3-211ENST00000563297 NBPF8Q3BBV2 869 aa22.79■■□□□ 1.24
CLK3-211ENST00000563297 KRT27Q7Z3Y8 459 aa22.79■■□□□ 1.24
CLK3-211ENST00000563297 BLMP54132 1417 aaPredicted RBP22.79■■□□□ 1.24
CLK3-211ENST00000563297 ACEP12821 1306 aa22.79■■□□□ 1.24
CLK3-211ENST00000563297 COL14A1Q05707 1796 aaKnown RBP22.78■■□□□ 1.24
CLK3-211ENST00000563297 PLEKHG3A1L390 1219 aa22.78■■□□□ 1.24
CLK3-211ENST00000563297 NRAPQ86VF7 1730 aa22.77■■□□□ 1.24
CLK3-211ENST00000563297 FAM98CQ17RN3 349 aaKnown RBP22.77■■□□□ 1.24
CLK3-211ENST00000563297 CRYBG1Q9Y4K1 1723 aa22.77■■□□□ 1.23
CLK3-211ENST00000563297 POLR3AO14802 1390 aaPredicted RBP22.76■■□□□ 1.23
CLK3-211ENST00000563297 PRDM11Q9NQV5 511 aa22.76■■□□□ 1.23
CLK3-211ENST00000563297 NUTM2GQ5VZR2 741 aa22.75■■□□□ 1.23
CLK3-211ENST00000563297 DEFB132Q7Z7B7 95 aa22.75■■□□□ 1.23
CLK3-211ENST00000563297 L3MBTL2Q969R5 705 aa22.75■■□□□ 1.23
CLK3-211ENST00000563297 SPATA31A5Q5VU36 1347 aa22.75■■□□□ 1.23
CLK3-211ENST00000563297 SPATA31A7Q8IWB4 1347 aa22.75■■□□□ 1.23
CLK3-211ENST00000563297 A0A0G2JS52 829 aa22.74■■□□□ 1.23
CLK3-211ENST00000563297 MYT1Q01538 1121 aa22.74■■□□□ 1.23
CLK3-211ENST00000563297 SF3B2Q13435 895 aaKnown RBP22.73■■□□□ 1.23
CLK3-211ENST00000563297 CENPJQ9HC77 1338 aaPredicted RBP22.73■■□□□ 1.23
CLK3-211ENST00000563297 SRCAPQ6ZRS2 3230 aa22.73■■□□□ 1.23
CLK3-211ENST00000563297 KIAA0232Q92628 1395 aa22.73■■□□□ 1.23
CLK3-211ENST00000563297 TOPAZ1Q8N9V7 1692 aa22.72■■□□□ 1.23
CLK3-211ENST00000563297 ZC3H6P61129 1189 aaKnown RBP22.72■■□□□ 1.23
CLK3-211ENST00000563297 CHRNA2Q15822 529 aa22.72■■□□□ 1.23
CLK3-211ENST00000563297 SIN3AQ96ST3 1273 aa22.72■■□□□ 1.23
CLK3-211ENST00000563297 SRPK2P78362 688 aaKnown RBP22.71■■□□□ 1.23
CLK3-211ENST00000563297 CABP2Q9NPB3 220 aa22.71■■□□□ 1.23
CLK3-211ENST00000563297 ABTB2Q8N961 1025 aa22.7■■□□□ 1.22
CLK3-211ENST00000563297 SPATA31A1Q5TZJ5 1347 aa22.67■■□□□ 1.22
CLK3-211ENST00000563297 STRN4Q9NRL3 753 aa22.67■■□□□ 1.22
CLK3-211ENST00000563297 PHRF1Q9P1Y6 1649 aaKnown RBP22.67■■□□□ 1.22
CLK3-211ENST00000563297 PPIP5K1Q6PFW1 1433 aa22.66■■□□□ 1.22
CLK3-211ENST00000563297 FAM182BQ5T319 152 aa22.66■■□□□ 1.22
CLK3-211ENST00000563297 NEUROD1Q13562 356 aa22.65■■□□□ 1.22
CLK3-211ENST00000563297 NLRP13Q86W25 1043 aa22.64■■□□□ 1.21
CLK3-211ENST00000563297 CABP1Q9NZU7 370 aa22.64■■□□□ 1.21
CLK3-211ENST00000563297 USP19O94966 1318 aa22.63■■□□□ 1.21
CLK3-211ENST00000563297 EVA1CP58658 441 aa22.63■■□□□ 1.21
CLK3-211ENST00000563297 QRICH2Q9H0J4 1663 aa22.62■■□□□ 1.21
CLK3-211ENST00000563297 GCP02774 474 aa22.62■■□□□ 1.21
CLK3-211ENST00000563297 THSD7AQ9UPZ6 1657 aa22.62■■□□□ 1.21
CLK3-211ENST00000563297 BAG6P46379 1132 aa22.61■■□□□ 1.21
CLK3-211ENST00000563297 BRD4O60885 1362 aaPredicted RBP22.61■■□□□ 1.21
CLK3-211ENST00000563297 USP35Q9P2H5 1018 aa22.6■■□□□ 1.21
CLK3-211ENST00000563297 CPDO75976 1380 aa22.6■■□□□ 1.21
CLK3-211ENST00000563297 CAMTA1Q9Y6Y1 1673 aa22.59■■□□□ 1.21
CLK3-211ENST00000563297 NRKQ7Z2Y5 1582 aa22.59■■□□□ 1.21
CLK3-211ENST00000563297 EVC2Q86UK5 1308 aa22.58■■□□□ 1.21
CLK3-211ENST00000563297 TRPM1Q7Z4N2 1603 aa22.58■■□□□ 1.21
CLK3-211ENST00000563297 LARP1Q6PKG0 1096 aaKnown RBP22.58■■□□□ 1.21
CLK3-211ENST00000563297 SSH2Q76I76 1423 aa22.57■■□□□ 1.2
CLK3-211ENST00000563297 NLRP6P59044 892 aa22.57■■□□□ 1.2
CLK3-211ENST00000563297 EN1Q05925 392 aaPredicted RBP22.57■■□□□ 1.2
CLK3-211ENST00000563297 BARGINQ6ZT62 677 aa22.57■■□□□ 1.2
CLK3-211ENST00000563297 USP6P35125 1406 aa22.57■■□□□ 1.2
CLK3-211ENST00000563297 ROCK2O75116 1388 aaKnown RBP22.56■■□□□ 1.2
CLK3-211ENST00000563297 FAM196AQ6ZSG2 479 aa22.54■■□□□ 1.2
CLK3-211ENST00000563297 TCP11L2Q8N4U5 519 aa22.54■■□□□ 1.2
CLK3-211ENST00000563297 LMO7Q8WWI1 1683 aa22.54■■□□□ 1.2
CLK3-211ENST00000563297 RGPD1P0DJD0 1748 aa22.53■■□□□ 1.2
CLK3-211ENST00000563297 ZNF692Q9BU19 519 aaPredicted RBP22.52■■□□□ 1.2
CLK3-211ENST00000563297 TRIM37O94972 964 aa22.51■■□□□ 1.19
CLK3-211ENST00000563297 PDE3BQ13370 1112 aa22.51■■□□□ 1.19
CLK3-211ENST00000563297 THRAP3Q9Y2W1 955 aaKnown RBP22.51■■□□□ 1.19
CLK3-211ENST00000563297 ZBTB7CA1YPR0 619 aa22.5■■□□□ 1.19
CLK3-211ENST00000563297 PSDA5PKW4 1024 aaPredicted RBP22.5■■□□□ 1.19
CLK3-211ENST00000563297 DISP2A7MBM2 1401 aa22.48■■□□□ 1.19
CLK3-211ENST00000563297 COL5A2P05997 1499 aaPredicted RBP22.48■■□□□ 1.19
CLK3-211ENST00000563297 EZH2Q15910 746 aaKnown RBP22.48■■□□□ 1.19
CLK3-211ENST00000563297 TTC21BQ7Z4L5 1316 aa22.48■■□□□ 1.19
CLK3-211ENST00000563297 AATKQ6ZMQ8 1374 aa22.48■■□□□ 1.19
CLK3-211ENST00000563297 SLIT3O75094 1523 aa22.47■■□□□ 1.19
CLK3-211ENST00000563297 CAMKK2Q96RR4 588 aa22.47■■□□□ 1.19
CLK3-211ENST00000563297 TNS1Q9HBL0 1735 aaKnown RBP22.47■■□□□ 1.19
CLK3-211ENST00000563297 APBA3O96018 575 aa22.46■■□□□ 1.19
CLK3-211ENST00000563297 AXIN2Q9Y2T1 843 aa22.45■■□□□ 1.18
CLK3-211ENST00000563297 CRB1P82279 1406 aa22.45■■□□□ 1.18
CLK3-211ENST00000563297 PIK3C2AO00443 1686 aa22.45■■□□□ 1.18
CLK3-211ENST00000563297 CPSF1Q10570 1443 aaKnown RBP22.44■■□□□ 1.18
CLK3-211ENST00000563297 ARHGEF25Q86VW2 580 aa22.43■■□□□ 1.18
CLK3-211ENST00000563297 CARD11Q9BXL7 1154 aa22.43■■□□□ 1.18
CLK3-211ENST00000563297 COL18A1P39060 1754 aa22.43■■□□□ 1.18
CLK3-211ENST00000563297 AKAP12Q02952 1782 aa22.43■■□□□ 1.18
CLK3-211ENST00000563297 TTC21AQ8NDW8 1320 aa22.42■■□□□ 1.18
CLK3-211ENST00000563297 R3HDM1Q15032 1099 aaKnown RBP22.42■■□□□ 1.18
CLK3-211ENST00000563297 KCNH5Q8NCM2 988 aa22.42■■□□□ 1.18
CLK3-211ENST00000563297 TOM1L2Q6ZVM7 507 aa22.41■■□□□ 1.18
CLK3-211ENST00000563297 KTN1Q86UP2 1357 aaKnown RBP22.4■■□□□ 1.18
CLK3-211ENST00000563297 SBNO2Q9Y2G9 1366 aa22.4■■□□□ 1.18
CLK3-211ENST00000563297 SOX12O15370 315 aa22.39■■□□□ 1.17
CLK3-211ENST00000563297 PARP4Q9UKK3 1724 aaKnown RBP22.39■■□□□ 1.17
CLK3-211ENST00000563297 WDR17Q8IZU2 1322 aa22.38■■□□□ 1.17
CLK3-211ENST00000563297 C11orf95C9JLR9 678 aaPredicted RBP22.37■■□□□ 1.17
CLK3-211ENST00000563297 LRP5O75197 1615 aa22.37■■□□□ 1.17
CLK3-211ENST00000563297 PARD3Q8TEW0 1356 aa22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms