RNA–Protein interactions for RNA: ENST00000563207.1

USB1-208, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 5

Gene USB1, Length 464 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-208ENST00000563207 NWD2Q9ULI1 1742 aa22.54■■□□□ 1.2
USB1-208ENST00000563207 L3MBTL2Q969R5 705 aa22.53■■□□□ 1.2
USB1-208ENST00000563207 NRAPQ86VF7 1730 aa22.52■■□□□ 1.2
USB1-208ENST00000563207 TOPAZ1Q8N9V7 1692 aa22.52■■□□□ 1.2
USB1-208ENST00000563207 VPS72Q15906 364 aa22.51■■□□□ 1.19
USB1-208ENST00000563207 NUTM2GQ5VZR2 741 aa22.5■■□□□ 1.19
USB1-208ENST00000563207 CCDC9Q9Y3X0 531 aaKnown RBP22.5■■□□□ 1.19
USB1-208ENST00000563207 NEUROD1Q13562 356 aa22.49■■□□□ 1.19
USB1-208ENST00000563207 BTG4Q9NY30 223 aa22.49■■□□□ 1.19
USB1-208ENST00000563207 SEPT12Q8IYM1 358 aa22.48■■□□□ 1.19
USB1-208ENST00000563207 ACEP12821 1306 aa22.48■■□□□ 1.19
USB1-208ENST00000563207 COL14A1Q05707 1796 aaKnown RBP22.46■■□□□ 1.19
USB1-208ENST00000563207 NBPF8Q3BBV2 869 aa22.46■■□□□ 1.19
USB1-208ENST00000563207 CABP2Q9NPB3 220 aa22.46■■□□□ 1.19
USB1-208ENST00000563207 QRICH2Q9H0J4 1663 aa22.46■■□□□ 1.19
USB1-208ENST00000563207 CCER1Q8TC90 406 aaPredicted RBP22.45■■□□□ 1.18
USB1-208ENST00000563207 POLR3AO14802 1390 aaPredicted RBP22.45■■□□□ 1.18
USB1-208ENST00000563207 CENPJQ9HC77 1338 aaPredicted RBP22.44■■□□□ 1.18
USB1-208ENST00000563207 PHRF1Q9P1Y6 1649 aaKnown RBP22.44■■□□□ 1.18
USB1-208ENST00000563207 CCDC61Q9Y6R9 512 aa22.44■■□□□ 1.18
USB1-208ENST00000563207 TRPM1Q7Z4N2 1603 aa22.43■■□□□ 1.18
USB1-208ENST00000563207 PLEKHG3A1L390 1219 aa22.43■■□□□ 1.18
USB1-208ENST00000563207 ONECUT3O60422 494 aaPredicted RBP22.43■■□□□ 1.18
USB1-208ENST00000563207 CHRNA2Q15822 529 aa22.43■■□□□ 1.18
USB1-208ENST00000563207 SRPK2P78362 688 aaKnown RBP22.42■■□□□ 1.18
USB1-208ENST00000563207 FAM98CQ17RN3 349 aaKnown RBP22.42■■□□□ 1.18
USB1-208ENST00000563207 ZC3H6P61129 1189 aaKnown RBP22.41■■□□□ 1.18
USB1-208ENST00000563207 KIAA0232Q92628 1395 aa22.4■■□□□ 1.18
USB1-208ENST00000563207 PRDM11Q9NQV5 511 aa22.4■■□□□ 1.18
USB1-208ENST00000563207 PPIP5K1Q6PFW1 1433 aa22.4■■□□□ 1.18
USB1-208ENST00000563207 TONSLQ96HA7 1378 aa22.38■■□□□ 1.17
USB1-208ENST00000563207 A0A0G2JS52 829 aa22.38■■□□□ 1.17
USB1-208ENST00000563207 MYT1Q01538 1121 aa22.38■■□□□ 1.17
USB1-208ENST00000563207 FAM182BQ5T319 152 aa22.38■■□□□ 1.17
USB1-208ENST00000563207 KRT27Q7Z3Y8 459 aa22.38■■□□□ 1.17
USB1-208ENST00000563207 DEFB132Q7Z7B7 95 aa22.38■■□□□ 1.17
USB1-208ENST00000563207 TIMELESSQ9UNS1 1208 aa22.38■■□□□ 1.17
USB1-208ENST00000563207 ABTB2Q8N961 1025 aa22.36■■□□□ 1.17
USB1-208ENST00000563207 CABP1Q9NZU7 370 aa22.36■■□□□ 1.17
USB1-208ENST00000563207 SPATA31A5Q5VU36 1347 aa22.35■■□□□ 1.17
USB1-208ENST00000563207 SPATA31A7Q8IWB4 1347 aa22.35■■□□□ 1.17
USB1-208ENST00000563207 SRCAPQ6ZRS2 3230 aa22.35■■□□□ 1.17
USB1-208ENST00000563207 CCDC125Q86Z20 511 aa22.35■■□□□ 1.17
USB1-208ENST00000563207 NRKQ7Z2Y5 1582 aa22.34■■□□□ 1.17
USB1-208ENST00000563207 BLMP54132 1417 aaPredicted RBP22.34■■□□□ 1.17
USB1-208ENST00000563207 STRN4Q9NRL3 753 aa22.34■■□□□ 1.17
USB1-208ENST00000563207 ROCK2O75116 1388 aaKnown RBP22.32■■□□□ 1.16
USB1-208ENST00000563207 THSD7AQ9UPZ6 1657 aa22.31■■□□□ 1.16
USB1-208ENST00000563207 CAMTA1Q9Y6Y1 1673 aa22.31■■□□□ 1.16
USB1-208ENST00000563207 USP19O94966 1318 aa22.3■■□□□ 1.16
USB1-208ENST00000563207 SPATA31A1Q5TZJ5 1347 aa22.3■■□□□ 1.16
USB1-208ENST00000563207 USP35Q9P2H5 1018 aa22.29■■□□□ 1.16
USB1-208ENST00000563207 LMO7Q8WWI1 1683 aa22.28■■□□□ 1.16
USB1-208ENST00000563207 ZRANB1Q9UGI0 708 aa22.28■■□□□ 1.16
USB1-208ENST00000563207 USP6P35125 1406 aa22.27■■□□□ 1.16
USB1-208ENST00000563207 GCP02774 474 aa22.26■■□□□ 1.15
USB1-208ENST00000563207 LARP1Q6PKG0 1096 aaKnown RBP22.26■■□□□ 1.15
USB1-208ENST00000563207 PIK3C2AO00443 1686 aa22.26■■□□□ 1.15
USB1-208ENST00000563207 EVC2Q86UK5 1308 aa22.26■■□□□ 1.15
USB1-208ENST00000563207 SSH2Q76I76 1423 aa22.25■■□□□ 1.15
USB1-208ENST00000563207 NLRP13Q86W25 1043 aa22.25■■□□□ 1.15
USB1-208ENST00000563207 ZBTB7CA1YPR0 619 aa22.24■■□□□ 1.15
USB1-208ENST00000563207 EVA1CP58658 441 aa22.24■■□□□ 1.15
USB1-208ENST00000563207 CPDO75976 1380 aa22.24■■□□□ 1.15
USB1-208ENST00000563207 NLRP6P59044 892 aa22.23■■□□□ 1.15
USB1-208ENST00000563207 SF3B2Q13435 895 aaKnown RBP22.23■■□□□ 1.15
USB1-208ENST00000563207 AKAP12Q02952 1782 aa22.22■■□□□ 1.15
USB1-208ENST00000563207 SLIT3O75094 1523 aa22.2■■□□□ 1.14
USB1-208ENST00000563207 EN1Q05925 392 aaPredicted RBP22.19■■□□□ 1.14
USB1-208ENST00000563207 TNS1Q9HBL0 1735 aaKnown RBP22.19■■□□□ 1.14
USB1-208ENST00000563207 COL18A1P39060 1754 aa22.18■■□□□ 1.14
USB1-208ENST00000563207 RGPD1P0DJD0 1748 aa22.18■■□□□ 1.14
USB1-208ENST00000563207 COL5A2P05997 1499 aaPredicted RBP22.18■■□□□ 1.14
USB1-208ENST00000563207 TTC21BQ7Z4L5 1316 aa22.18■■□□□ 1.14
USB1-208ENST00000563207 CARD11Q9BXL7 1154 aa22.18■■□□□ 1.14
USB1-208ENST00000563207 BRD4O60885 1362 aaPredicted RBP22.16■■□□□ 1.14
USB1-208ENST00000563207 SOX12O15370 315 aa22.16■■□□□ 1.14
USB1-208ENST00000563207 BARGINQ6ZT62 677 aa22.16■■□□□ 1.14
USB1-208ENST00000563207 AXIN2Q9Y2T1 843 aa22.16■■□□□ 1.14
USB1-208ENST00000563207 RGPD5Q99666 1765 aa22.16■■□□□ 1.14
USB1-208ENST00000563207 CPSF1Q10570 1443 aaKnown RBP22.15■■□□□ 1.14
USB1-208ENST00000563207 TRIM37O94972 964 aa22.15■■□□□ 1.14
USB1-208ENST00000563207 BAG6P46379 1132 aa22.15■■□□□ 1.14
USB1-208ENST00000563207 PSDA5PKW4 1024 aaPredicted RBP22.14■■□□□ 1.13
USB1-208ENST00000563207 TCP11L2Q8N4U5 519 aa22.14■■□□□ 1.13
USB1-208ENST00000563207 MON2Q7Z3U7 1717 aa22.12■■□□□ 1.13
USB1-208ENST00000563207 CD163L1Q9NR16 1453 aa22.12■■□□□ 1.13
USB1-208ENST00000563207 EZH2Q15910 746 aaKnown RBP22.12■■□□□ 1.13
USB1-208ENST00000563207 ZNF692Q9BU19 519 aaPredicted RBP22.12■■□□□ 1.13
USB1-208ENST00000563207 AATKQ6ZMQ8 1374 aa22.12■■□□□ 1.13
USB1-208ENST00000563207 KTN1Q86UP2 1357 aaKnown RBP22.12■■□□□ 1.13
USB1-208ENST00000563207 FAM196AQ6ZSG2 479 aa22.1■■□□□ 1.13
USB1-208ENST00000563207 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.1■■□□□ 1.13
USB1-208ENST00000563207 SBNO2Q9Y2G9 1366 aa22.1■■□□□ 1.13
USB1-208ENST00000563207 CRB1P82279 1406 aa22.09■■□□□ 1.13
USB1-208ENST00000563207 PDE3BQ13370 1112 aa22.09■■□□□ 1.13
USB1-208ENST00000563207 ARHGEF25Q86VW2 580 aa22.09■■□□□ 1.13
USB1-208ENST00000563207 SLC12A5Q9H2X9 1139 aa22.09■■□□□ 1.13
USB1-208ENST00000563207 PARP4Q9UKK3 1724 aaKnown RBP22.09■■□□□ 1.13
USB1-208ENST00000563207 TMC1Q8TDI8 760 aa22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms