RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 CALD1Q05682 793 aaKnown RBP9.87□□□□□ -0.83
VPS39-204ENST00000561818 CNGB1Q14028 1251 aaPredicted RBP9.87□□□□□ -0.83
VPS39-204ENST00000561818 SAFB2Q14151 953 aaKnown RBP eCLIP9.87□□□□□ -0.83
VPS39-204ENST00000561818 NUDT16Q96DE0 195 aaKnown RBP9.87□□□□□ -0.83
VPS39-204ENST00000561818 CABP1Q9NZU7 370 aa9.87□□□□□ -0.83
VPS39-204ENST00000561818 ADAMTS8Q9UP79 889 aa9.87□□□□□ -0.83
VPS39-204ENST00000561818 NCOA3Q9Y6Q9 1424 aa9.87□□□□□ -0.83
VPS39-204ENST00000561818 PNPLA6Q8IY17 1366 aa9.87□□□□□ -0.83
VPS39-204ENST00000561818 ROBO2Q9HCK4 1378 aa9.87□□□□□ -0.83
VPS39-204ENST00000561818 NKTRP30414 1462 aaKnown RBP9.86□□□□□ -0.83
VPS39-204ENST00000561818 AKAP12Q02952 1782 aa9.86□□□□□ -0.83
VPS39-204ENST00000561818 AAMPQ13685 434 aa9.86□□□□□ -0.83
VPS39-204ENST00000561818 COG3Q96JB2 828 aa9.86□□□□□ -0.83
VPS39-204ENST00000561818 PPP4R2Q9NY27 417 aa9.86□□□□□ -0.83
VPS39-204ENST00000561818 AMOTL2Q9Y2J4 779 aa9.86□□□□□ -0.83
VPS39-204ENST00000561818 FYB1O15117 783 aa9.85□□□□□ -0.83
VPS39-204ENST00000561818 CEBPAP49715 358 aaPredicted RBP9.85□□□□□ -0.83
VPS39-204ENST00000561818 MTHFSP49914 203 aa9.85□□□□□ -0.83
VPS39-204ENST00000561818 WAPLQ7Z5K2 1190 aa9.85□□□□□ -0.83
VPS39-204ENST00000561818 WDR63Q8IWG1 891 aa9.85□□□□□ -0.83
VPS39-204ENST00000561818 RCAN3Q9UKA8 241 aa9.85□□□□□ -0.83
VPS39-204ENST00000561818 ZNF521Q96K83 1311 aa9.84□□□□□ -0.83
VPS39-204ENST00000561818 MAPK8IP3Q9UPT6 1336 aa9.84□□□□□ -0.83
VPS39-204ENST00000561818 NPHP4O75161 1426 aaPredicted RBP9.84□□□□□ -0.83
VPS39-204ENST00000561818 LMOD3Q0VAK6 560 aa9.84□□□□□ -0.83
VPS39-204ENST00000561818 MYH16Q9H6N6 1097 aa9.84□□□□□ -0.83
VPS39-204ENST00000561818 PLEKHH1Q9ULM0 1364 aa9.84□□□□□ -0.83
VPS39-204ENST00000561818 NWD1Q149M9 1564 aa9.84□□□□□ -0.83
VPS39-204ENST00000561818 USP6P35125 1406 aa9.83□□□□□ -0.84
VPS39-204ENST00000561818 DIAPH1O60610 1272 aaKnown RBP9.83□□□□□ -0.84
VPS39-204ENST00000561818 HAP1P54257 671 aaPredicted RBP9.83□□□□□ -0.84
VPS39-204ENST00000561818 IL16Q14005 1332 aa9.82□□□□□ -0.84
VPS39-204ENST00000561818 TTC21BQ7Z4L5 1316 aa9.82□□□□□ -0.84
VPS39-204ENST00000561818 DCCP43146 1447 aa9.82□□□□□ -0.84
VPS39-204ENST00000561818 FCHSD2O94868 740 aa9.82□□□□□ -0.84
VPS39-204ENST00000561818 USP31Q70CQ4 1352 aa9.82□□□□□ -0.84
VPS39-204ENST00000561818 IQSEC2Q5JU85 1478 aa9.82□□□□□ -0.84
VPS39-204ENST00000561818 NRKQ7Z2Y5 1582 aa9.82□□□□□ -0.84
VPS39-204ENST00000561818 SHPRHQ149N8 1683 aa9.82□□□□□ -0.84
VPS39-204ENST00000561818 CHD2O14647 1828 aaKnown RBP9.82□□□□□ -0.84
VPS39-204ENST00000561818 PTPRUQ92729 1446 aa9.82□□□□□ -0.84
VPS39-204ENST00000561818 ADGRL3Q9HAR2 1447 aa9.82□□□□□ -0.84
VPS39-204ENST00000561818 COL3A1P02461 1466 aaPredicted RBP9.81□□□□□ -0.84
VPS39-204ENST00000561818 MS4A1P11836 297 aa9.81□□□□□ -0.84
VPS39-204ENST00000561818 ZNF428Q96B54 188 aa9.81□□□□□ -0.84
VPS39-204ENST00000561818 SLC26A8Q96RN1 970 aa9.81□□□□□ -0.84
VPS39-204ENST00000561818 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.81□□□□□ -0.84
VPS39-204ENST00000561818 USP54Q70EL1 1684 aa9.8□□□□□ -0.84
VPS39-204ENST00000561818 FMN2Q9NZ56 1722 aa9.8□□□□□ -0.84
VPS39-204ENST00000561818 U2AF1L5P0DN76 240 aaPredicted RBP9.8□□□□□ -0.84
VPS39-204ENST00000561818 KCNA6P17658 529 aa9.8□□□□□ -0.84
VPS39-204ENST00000561818 RRP1P56182 461 aaKnown RBP9.8□□□□□ -0.84
VPS39-204ENST00000561818 U2AF1Q01081 240 aaKnown RBP eCLIP9.8□□□□□ -0.84
VPS39-204ENST00000561818 OVOS2A0A0J9YW53 1432 aa9.8□□□□□ -0.84
VPS39-204ENST00000561818 OVOS2Q6IE36 1432 aa9.8□□□□□ -0.84
VPS39-204ENST00000561818 SLFN5Q08AF3 891 aa9.79□□□□□ -0.84
VPS39-204ENST00000561818 GGNBP2Q9H3C7 697 aa9.79□□□□□ -0.84
VPS39-204ENST00000561818 RTL1A6NKG5 1358 aa9.78□□□□□ -0.84
VPS39-204ENST00000561818 APAF1O14727 1248 aa9.78□□□□□ -0.84
VPS39-204ENST00000561818 TRMT2AQ8IZ69 625 aaKnown RBP9.78□□□□□ -0.84
VPS39-204ENST00000561818 NGDNQ8NEJ9 315 aaKnown RBP9.78□□□□□ -0.84
VPS39-204ENST00000561818 SSH2Q76I76 1423 aa9.78□□□□□ -0.84
VPS39-204ENST00000561818 NALCNQ8IZF0 1738 aa9.78□□□□□ -0.84
VPS39-204ENST00000561818 ACEP12821 1306 aa9.78□□□□□ -0.84
VPS39-204ENST00000561818 KIF1AQ12756 1690 aa9.77□□□□□ -0.84
VPS39-204ENST00000561818 DUSP27Q5VZP5 1158 aa9.77□□□□□ -0.85
VPS39-204ENST00000561818 WWC1Q8IX03 1113 aa9.77□□□□□ -0.85
VPS39-204ENST00000561818 TNNT2P45379 298 aaPredicted RBP9.76□□□□□ -0.85
VPS39-204ENST00000561818 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.76□□□□□ -0.85
VPS39-204ENST00000561818 TCP11L2Q8N4U5 519 aa9.76□□□□□ -0.85
VPS39-204ENST00000561818 KCNH5Q8NCM2 988 aa9.76□□□□□ -0.85
VPS39-204ENST00000561818 CHMP4BQ9H444 224 aaKnown RBP9.76□□□□□ -0.85
VPS39-204ENST00000561818 PRR36Q9H6K5 1346 aa9.76□□□□□ -0.85
VPS39-204ENST00000561818 SBNO1A3KN83 1393 aa9.75□□□□□ -0.85
VPS39-204ENST00000561818 FLT4P35916 1363 aa9.75□□□□□ -0.85
VPS39-204ENST00000561818 PLEKHG2Q9H7P9 1386 aa9.75□□□□□ -0.85
VPS39-204ENST00000561818 U2SURPO15042 1029 aaKnown RBP9.75□□□□□ -0.85
VPS39-204ENST00000561818 CHMP4AQ9BY43 222 aa9.75□□□□□ -0.85
VPS39-204ENST00000561818 POLKQ9UBT6 870 aa9.75□□□□□ -0.85
VPS39-204ENST00000561818 ARHGEF10O15013 1369 aa9.75□□□□□ -0.85
VPS39-204ENST00000561818 SLC4A2P04920 1241 aa9.74□□□□□ -0.85
VPS39-204ENST00000561818 PDE3AQ14432 1141 aa9.74□□□□□ -0.85
VPS39-204ENST00000561818 CCDC136Q96JN2 1154 aa9.74□□□□□ -0.85
VPS39-204ENST00000561818 U3KPZ7 1027 aaPredicted RBP9.74□□□□□ -0.85
VPS39-204ENST00000561818 MST1RQ04912 1400 aa9.73□□□□□ -0.85
VPS39-204ENST00000561818 TMPOP42166 694 aaKnown RBP9.72□□□□□ -0.85
VPS39-204ENST00000561818 NME9Q86XW9 330 aa9.72□□□□□ -0.85
VPS39-204ENST00000561818 CCDC146Q8IYE0 955 aa9.72□□□□□ -0.85
VPS39-204ENST00000561818 PLEKHF1Q96S99 279 aa9.72□□□□□ -0.85
VPS39-204ENST00000561818 C19orf44Q9H6X5 657 aa9.72□□□□□ -0.85
VPS39-204ENST00000561818 PHF8Q9UPP1 1060 aa9.72□□□□□ -0.85
VPS39-204ENST00000561818 KIF16BQ96L93 1317 aa9.72□□□□□ -0.85
VPS39-204ENST00000561818 MAP2P11137 1827 aaKnown RBP9.72□□□□□ -0.85
VPS39-204ENST00000561818 IL13P35225 146 aa9.71□□□□□ -0.86
VPS39-204ENST00000561818 PSME1Q06323 249 aa9.71□□□□□ -0.86
VPS39-204ENST00000561818 NFE2L2Q16236 605 aa9.71□□□□□ -0.86
VPS39-204ENST00000561818 C14orf37Q86TY3 774 aa9.71□□□□□ -0.86
VPS39-204ENST00000561818 CADPS2Q86UW7 1296 aa9.71□□□□□ -0.86
VPS39-204ENST00000561818 RSPH6AQ9H0K4 717 aa9.71□□□□□ -0.86
VPS39-204ENST00000561818 SOS1Q07889 1333 aaPredicted RBP9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 284.1 ms