RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 CABP2Q9NPB3 220 aa14.77□□□□□ -0.05
CLK3-205ENST00000561673 RALGAPBQ86X10 1494 aa14.76□□□□□ -0.05
CLK3-205ENST00000561673 POLR3AO14802 1390 aaPredicted RBP14.76□□□□□ -0.05
CLK3-205ENST00000561673 ATAD2Q6PL18 1390 aa14.75□□□□□ -0.05
CLK3-205ENST00000561673 ALS2Q96Q42 1657 aa14.75□□□□□ -0.05
CLK3-205ENST00000561673 TRIM26Q12899 539 aaPredicted RBP14.75□□□□□ -0.05
CLK3-205ENST00000561673 ROCK2O75116 1388 aaKnown RBP14.74□□□□□ -0.05
CLK3-205ENST00000561673 NUTM2GQ5VZR2 741 aa14.74□□□□□ -0.05
CLK3-205ENST00000561673 BTG4Q9NY30 223 aa14.74□□□□□ -0.05
CLK3-205ENST00000561673 CCDC9Q9Y3X0 531 aaKnown RBP14.74□□□□□ -0.05
CLK3-205ENST00000561673 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.74□□□□□ -0.05
CLK3-205ENST00000561673 ABCA3Q99758 1704 aa14.73□□□□□ -0.05
CLK3-205ENST00000561673 GLI3P10071 1580 aa14.73□□□□□ -0.05
CLK3-205ENST00000561673 ITSN1Q15811 1721 aa14.72□□□□□ -0.05
CLK3-205ENST00000561673 ONECUT3O60422 494 aaPredicted RBP14.72□□□□□ -0.05
CLK3-205ENST00000561673 SEPT12Q8IYM1 358 aa14.72□□□□□ -0.05
CLK3-205ENST00000561673 CABP1Q9NZU7 370 aa14.72□□□□□ -0.05
CLK3-205ENST00000561673 PPIP5K1Q6PFW1 1433 aa14.72□□□□□ -0.05
CLK3-205ENST00000561673 TRPM1Q7Z4N2 1603 aa14.71□□□□□ -0.05
CLK3-205ENST00000561673 ABTB2Q8N961 1025 aa14.71□□□□□ -0.05
CLK3-205ENST00000561673 PRDM11Q9NQV5 511 aa14.71□□□□□ -0.05
CLK3-205ENST00000561673 TOPAZ1Q8N9V7 1692 aa14.71□□□□□ -0.06
CLK3-205ENST00000561673 EVC2Q86UK5 1308 aa14.7□□□□□ -0.06
CLK3-205ENST00000561673 PLCH1Q4KWH8 1693 aa14.7□□□□□ -0.06
CLK3-205ENST00000561673 NWD2Q9ULI1 1742 aa14.69□□□□□ -0.06
CLK3-205ENST00000561673 ZC3H6P61129 1189 aaKnown RBP14.69□□□□□ -0.06
CLK3-205ENST00000561673 CHRNA2Q15822 529 aa14.69□□□□□ -0.06
CLK3-205ENST00000561673 KIAA0232Q92628 1395 aa14.69□□□□□ -0.06
CLK3-205ENST00000561673 QRICH2Q9H0J4 1663 aa14.68□□□□□ -0.06
CLK3-205ENST00000561673 FAM98CQ17RN3 349 aaKnown RBP14.68□□□□□ -0.06
CLK3-205ENST00000561673 SRCAPQ6ZRS2 3230 aa14.68□□□□□ -0.06
CLK3-205ENST00000561673 CCDC125Q86Z20 511 aa14.67□□□□□ -0.06
CLK3-205ENST00000561673 CARD11Q9BXL7 1154 aa14.67□□□□□ -0.06
CLK3-205ENST00000561673 COL14A1Q05707 1796 aaKnown RBP14.67□□□□□ -0.06
CLK3-205ENST00000561673 SPATA31A5Q5VU36 1347 aa14.66□□□□□ -0.06
CLK3-205ENST00000561673 SPATA31A7Q8IWB4 1347 aa14.66□□□□□ -0.06
CLK3-205ENST00000561673 CRYBG1Q9Y4K1 1723 aa14.66□□□□□ -0.06
CLK3-205ENST00000561673 TONSLQ96HA7 1378 aa14.66□□□□□ -0.06
CLK3-205ENST00000561673 NLRP13Q86W25 1043 aa14.66□□□□□ -0.06
CLK3-205ENST00000561673 BRD4O60885 1362 aaPredicted RBP14.65□□□□□ -0.06
CLK3-205ENST00000561673 GCP02774 474 aa14.65□□□□□ -0.06
CLK3-205ENST00000561673 KRT27Q7Z3Y8 459 aa14.65□□□□□ -0.06
CLK3-205ENST00000561673 NRAPQ86VF7 1730 aa14.65□□□□□ -0.06
CLK3-205ENST00000561673 USP19O94966 1318 aa14.65□□□□□ -0.06
CLK3-205ENST00000561673 A0A0G2JS52 829 aa14.64□□□□□ -0.07
CLK3-205ENST00000561673 MYT1Q01538 1121 aa14.64□□□□□ -0.07
CLK3-205ENST00000561673 STRN4Q9NRL3 753 aa14.64□□□□□ -0.07
CLK3-205ENST00000561673 USP6P35125 1406 aa14.64□□□□□ -0.07
CLK3-205ENST00000561673 NLRP6P59044 892 aa14.63□□□□□ -0.07
CLK3-205ENST00000561673 ZNF692Q9BU19 519 aaPredicted RBP14.63□□□□□ -0.07
CLK3-205ENST00000561673 PHRF1Q9P1Y6 1649 aaKnown RBP14.63□□□□□ -0.07
CLK3-205ENST00000561673 EVA1CP58658 441 aa14.62□□□□□ -0.07
CLK3-205ENST00000561673 NCBP3Q53F19 620 aaKnown RBP14.62□□□□□ -0.07
CLK3-205ENST00000561673 SSH2Q76I76 1423 aa14.62□□□□□ -0.07
CLK3-205ENST00000561673 SPATA31A1Q5TZJ5 1347 aa14.62□□□□□ -0.07
CLK3-205ENST00000561673 CPDO75976 1380 aa14.61□□□□□ -0.07
CLK3-205ENST00000561673 BRWD3Q6RI45 1802 aa14.61□□□□□ -0.07
CLK3-205ENST00000561673 BLMP54132 1417 aaPredicted RBP14.6□□□□□ -0.07
CLK3-205ENST00000561673 TTC21BQ7Z4L5 1316 aa14.6□□□□□ -0.07
CLK3-205ENST00000561673 NRKQ7Z2Y5 1582 aa14.6□□□□□ -0.07
CLK3-205ENST00000561673 SBNO2Q9Y2G9 1366 aa14.6□□□□□ -0.07
CLK3-205ENST00000561673 LARP1Q6PKG0 1096 aaKnown RBP14.59□□□□□ -0.07
CLK3-205ENST00000561673 USP35Q9P2H5 1018 aa14.59□□□□□ -0.07
CLK3-205ENST00000561673 CAMTA1Q9Y6Y1 1673 aa14.58□□□□□ -0.07
CLK3-205ENST00000561673 CPSF1Q10570 1443 aaKnown RBP14.58□□□□□ -0.07
CLK3-205ENST00000561673 SF3B2Q13435 895 aaKnown RBP14.58□□□□□ -0.08
CLK3-205ENST00000561673 FAM182BQ5T319 152 aa14.58□□□□□ -0.08
CLK3-205ENST00000561673 DEFB132Q7Z7B7 95 aa14.58□□□□□ -0.08
CLK3-205ENST00000561673 ZBTB7CA1YPR0 619 aa14.57□□□□□ -0.08
CLK3-205ENST00000561673 ZRANB1Q9UGI0 708 aa14.57□□□□□ -0.08
CLK3-205ENST00000561673 KTN1Q86UP2 1357 aaKnown RBP14.57□□□□□ -0.08
CLK3-205ENST00000561673 BARGINQ6ZT62 677 aa14.56□□□□□ -0.08
CLK3-205ENST00000561673 TMC1Q8TDI8 760 aa14.56□□□□□ -0.08
CLK3-205ENST00000561673 TTC21AQ8NDW8 1320 aa14.56□□□□□ -0.08
CLK3-205ENST00000561673 ST20-MTHFSA0A0A6YYL1 179 aa14.55□□□□□ -0.08
CLK3-205ENST00000561673 TCP11L2Q8N4U5 519 aa14.55□□□□□ -0.08
CLK3-205ENST00000561673 SLC12A5Q9H2X9 1139 aa14.55□□□□□ -0.08
CLK3-205ENST00000561673 AATKQ6ZMQ8 1374 aa14.55□□□□□ -0.08
CLK3-205ENST00000561673 SLIT3O75094 1523 aa14.55□□□□□ -0.08
CLK3-205ENST00000561673 LMO7Q8WWI1 1683 aa14.55□□□□□ -0.08
CLK3-205ENST00000561673 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.54□□□□□ -0.08
CLK3-205ENST00000561673 TESK2Q96S53 571 aa14.54□□□□□ -0.08
CLK3-205ENST00000561673 AXIN2Q9Y2T1 843 aa14.54□□□□□ -0.08
CLK3-205ENST00000561673 PIK3C2AO00443 1686 aa14.54□□□□□ -0.08
CLK3-205ENST00000561673 THSD7AQ9UPZ6 1657 aa14.54□□□□□ -0.08
CLK3-205ENST00000561673 COL5A2P05997 1499 aaPredicted RBP14.53□□□□□ -0.08
CLK3-205ENST00000561673 SOX12O15370 315 aa14.53□□□□□ -0.08
CLK3-205ENST00000561673 ARHGEF25Q86VW2 580 aa14.53□□□□□ -0.08
CLK3-205ENST00000561673 KCNH5Q8NCM2 988 aa14.53□□□□□ -0.08
CLK3-205ENST00000561673 PUS7Q96PZ0 661 aaKnown RBP14.53□□□□□ -0.08
CLK3-205ENST00000561673 THRAP3Q9Y2W1 955 aaKnown RBP14.53□□□□□ -0.08
CLK3-205ENST00000561673 CD163L1Q9NR16 1453 aa14.52□□□□□ -0.08
CLK3-205ENST00000561673 NPM3O75607 178 aaKnown RBP14.51□□□□□ -0.09
CLK3-205ENST00000561673 BAG6P46379 1132 aa14.51□□□□□ -0.09
CLK3-205ENST00000561673 PDE3BQ13370 1112 aa14.51□□□□□ -0.09
CLK3-205ENST00000561673 FAM196AQ6ZSG2 479 aa14.51□□□□□ -0.09
CLK3-205ENST00000561673 HDGFL2Q7Z4V5 671 aaPredicted RBP14.51□□□□□ -0.09
CLK3-205ENST00000561673 AKAP12Q02952 1782 aa14.51□□□□□ -0.09
CLK3-205ENST00000561673 NME9Q86XW9 330 aa14.5□□□□□ -0.09
CLK3-205ENST00000561673 PCGF6Q9BYE7 350 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms