RNA–Protein interactions for RNA: ENST00000561514.1

PALB2-202, Transcript of partner and localizer of BRCA2, humanhuman

TSL 5

Gene PALB2, Length 815 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-202ENST00000561514 KRT27Q7Z3Y8 459 aa12.32□□□□□ -0.44
PALB2-202ENST00000561514 COL14A1Q05707 1796 aaKnown RBP12.32□□□□□ -0.44
PALB2-202ENST00000561514 SPATA31A5Q5VU36 1347 aa12.32□□□□□ -0.44
PALB2-202ENST00000561514 SPATA31A7Q8IWB4 1347 aa12.32□□□□□ -0.44
PALB2-202ENST00000561514 DISP2A7MBM2 1401 aa12.31□□□□□ -0.44
PALB2-202ENST00000561514 LMOD2Q6P5Q4 547 aa12.31□□□□□ -0.44
PALB2-202ENST00000561514 BTG4Q9NY30 223 aa12.31□□□□□ -0.44
PALB2-202ENST00000561514 ARHGEF28Q8N1W1 1705 aaKnown RBP12.31□□□□□ -0.44
PALB2-202ENST00000561514 THSD7AQ9UPZ6 1657 aa12.3□□□□□ -0.44
PALB2-202ENST00000561514 DEFB132Q7Z7B7 95 aa12.3□□□□□ -0.44
PALB2-202ENST00000561514 BRWD3Q6RI45 1802 aa12.3□□□□□ -0.44
PALB2-202ENST00000561514 NGDNQ8NEJ9 315 aaKnown RBP12.29□□□□□ -0.44
PALB2-202ENST00000561514 NUDT16Q96DE0 195 aaKnown RBP12.29□□□□□ -0.44
PALB2-202ENST00000561514 KDM2AQ9Y2K7 1162 aa12.29□□□□□ -0.44
PALB2-202ENST00000561514 PLEKHG3A1L390 1219 aa12.28□□□□□ -0.44
PALB2-202ENST00000561514 FAM98CQ17RN3 349 aaKnown RBP12.28□□□□□ -0.44
PALB2-202ENST00000561514 CCDC9Q9Y3X0 531 aaKnown RBP12.28□□□□□ -0.44
PALB2-202ENST00000561514 TOPAZ1Q8N9V7 1692 aa12.28□□□□□ -0.44
PALB2-202ENST00000561514 KIAA1210Q9ULL0 1709 aa12.27□□□□□ -0.45
PALB2-202ENST00000561514 USP19O94966 1318 aa12.27□□□□□ -0.45
PALB2-202ENST00000561514 KIAA0232Q92628 1395 aa12.27□□□□□ -0.45
PALB2-202ENST00000561514 SF3B2Q13435 895 aaKnown RBP12.26□□□□□ -0.45
PALB2-202ENST00000561514 CDK19Q9BWU1 502 aa12.26□□□□□ -0.45
PALB2-202ENST00000561514 PRDM11Q9NQV5 511 aa12.26□□□□□ -0.45
PALB2-202ENST00000561514 CCDC61Q9Y6R9 512 aa12.26□□□□□ -0.45
PALB2-202ENST00000561514 SPATA31A1Q5TZJ5 1347 aa12.26□□□□□ -0.45
PALB2-202ENST00000561514 CPDO75976 1380 aa12.26□□□□□ -0.45
PALB2-202ENST00000561514 LRP5O75197 1615 aa12.26□□□□□ -0.45
PALB2-202ENST00000561514 ITSN1Q15811 1721 aa12.25□□□□□ -0.45
PALB2-202ENST00000561514 KCNA4P22459 653 aa12.25□□□□□ -0.45
PALB2-202ENST00000561514 BAG6P46379 1132 aa12.25□□□□□ -0.45
PALB2-202ENST00000561514 BRD4O60885 1362 aaPredicted RBP12.25□□□□□ -0.45
PALB2-202ENST00000561514 PLEKHG5O94827 1062 aa12.24□□□□□ -0.45
PALB2-202ENST00000561514 ACEP12821 1306 aa12.24□□□□□ -0.45
PALB2-202ENST00000561514 NBPF8Q3BBV2 869 aa12.24□□□□□ -0.45
PALB2-202ENST00000561514 NRKQ7Z2Y5 1582 aa12.24□□□□□ -0.45
PALB2-202ENST00000561514 PHRF1Q9P1Y6 1649 aaKnown RBP12.24□□□□□ -0.45
PALB2-202ENST00000561514 SSH2Q76I76 1423 aa12.23□□□□□ -0.45
PALB2-202ENST00000561514 PAK3O75914 559 aaPredicted RBP12.23□□□□□ -0.45
PALB2-202ENST00000561514 BARGINQ6ZT62 677 aa12.23□□□□□ -0.45
PALB2-202ENST00000561514 NBPF1Q3BBV0 1214 aa12.22□□□□□ -0.45
PALB2-202ENST00000561514 LMO7Q8WWI1 1683 aa12.22□□□□□ -0.45
PALB2-202ENST00000561514 PARD3Q8TEW0 1356 aa12.21□□□□□ -0.45
PALB2-202ENST00000561514 RGPD1P0DJD0 1748 aa12.2□□□□□ -0.46
PALB2-202ENST00000561514 CAMTA1Q9Y6Y1 1673 aa12.2□□□□□ -0.46
PALB2-202ENST00000561514 CENPJQ9HC77 1338 aaPredicted RBP12.2□□□□□ -0.46
PALB2-202ENST00000561514 A0A0G2JS52 829 aa12.2□□□□□ -0.46
PALB2-202ENST00000561514 CHRNA2Q15822 529 aa12.2□□□□□ -0.46
PALB2-202ENST00000561514 TNS1Q9HBL0 1735 aaKnown RBP12.2□□□□□ -0.46
PALB2-202ENST00000561514 PPIP5K1Q6PFW1 1433 aa12.2□□□□□ -0.46
PALB2-202ENST00000561514 ZC3H6P61129 1189 aaKnown RBP12.19□□□□□ -0.46
PALB2-202ENST00000561514 MAPK8IP2Q13387 824 aaPredicted RBP12.19□□□□□ -0.46
PALB2-202ENST00000561514 FAM196AQ6ZSG2 479 aa12.19□□□□□ -0.46
PALB2-202ENST00000561514 CAMKK2Q96RR4 588 aa12.19□□□□□ -0.46
PALB2-202ENST00000561514 SLIT3O75094 1523 aa12.18□□□□□ -0.46
PALB2-202ENST00000561514 EN1Q05925 392 aaPredicted RBP12.18□□□□□ -0.46
PALB2-202ENST00000561514 FAM182BQ5T319 152 aa12.18□□□□□ -0.46
PALB2-202ENST00000561514 COL5A2P05997 1499 aaPredicted RBP12.18□□□□□ -0.46
PALB2-202ENST00000561514 USP6P35125 1406 aa12.18□□□□□ -0.46
PALB2-202ENST00000561514 GCP02774 474 aa12.17□□□□□ -0.46
PALB2-202ENST00000561514 ABTB2Q8N961 1025 aa12.17□□□□□ -0.46
PALB2-202ENST00000561514 THRAP3Q9Y2W1 955 aaKnown RBP12.17□□□□□ -0.46
PALB2-202ENST00000561514 NUTM2GQ5VZR2 741 aa12.16□□□□□ -0.46
PALB2-202ENST00000561514 LARP1Q6PKG0 1096 aaKnown RBP12.16□□□□□ -0.46
PALB2-202ENST00000561514 NLRP13Q86W25 1043 aa12.16□□□□□ -0.46
PALB2-202ENST00000561514 TCP11L2Q8N4U5 519 aa12.16□□□□□ -0.46
PALB2-202ENST00000561514 STRN4Q9NRL3 753 aa12.16□□□□□ -0.46
PALB2-202ENST00000561514 AATKQ6ZMQ8 1374 aa12.16□□□□□ -0.46
PALB2-202ENST00000561514 PSDA5PKW4 1024 aaPredicted RBP12.15□□□□□ -0.46
PALB2-202ENST00000561514 CABP2Q9NPB3 220 aa12.15□□□□□ -0.46
PALB2-202ENST00000561514 CRB1P82279 1406 aa12.14□□□□□ -0.47
PALB2-202ENST00000561514 SRPK2P78362 688 aaKnown RBP12.14□□□□□ -0.47
PALB2-202ENST00000561514 EZH2Q15910 746 aaKnown RBP12.14□□□□□ -0.47
PALB2-202ENST00000561514 L3MBTL2Q969R5 705 aa12.14□□□□□ -0.47
PALB2-202ENST00000561514 BCL9O00512 1426 aa12.13□□□□□ -0.47
PALB2-202ENST00000561514 C11orf95C9JLR9 678 aaPredicted RBP12.13□□□□□ -0.47
PALB2-202ENST00000561514 TRIM37O94972 964 aa12.13□□□□□ -0.47
PALB2-202ENST00000561514 R3HDM1Q15032 1099 aaKnown RBP12.12□□□□□ -0.47
PALB2-202ENST00000561514 CABP1Q9NZU7 370 aa12.12□□□□□ -0.47
PALB2-202ENST00000561514 SBNO2Q9Y2G9 1366 aa12.12□□□□□ -0.47
PALB2-202ENST00000561514 RREB1Q92766 1687 aa12.12□□□□□ -0.47
PALB2-202ENST00000561514 QRICH2Q9H0J4 1663 aa12.12□□□□□ -0.47
PALB2-202ENST00000561514 CPSF1Q10570 1443 aaKnown RBP12.11□□□□□ -0.47
PALB2-202ENST00000561514 PARP4Q9UKK3 1724 aaKnown RBP12.11□□□□□ -0.47
PALB2-202ENST00000561514 EVA1CP58658 441 aa12.11□□□□□ -0.47
PALB2-202ENST00000561514 PDE3BQ13370 1112 aa12.11□□□□□ -0.47
PALB2-202ENST00000561514 PEAK1Q9H792 1746 aa12.11□□□□□ -0.47
PALB2-202ENST00000561514 TRPM1Q7Z4N2 1603 aa12.11□□□□□ -0.47
PALB2-202ENST00000561514 OVOS2A0A0G2JMS6 1433 aa12.11□□□□□ -0.47
PALB2-202ENST00000561514 OVOS2A0A0J9YW53 1432 aa12.11□□□□□ -0.47
PALB2-202ENST00000561514 OVOS2Q6IE36 1432 aa12.11□□□□□ -0.47
PALB2-202ENST00000561514 EVC2Q86UK5 1308 aa12.11□□□□□ -0.47
PALB2-202ENST00000561514 PIK3C2AO00443 1686 aa12.1□□□□□ -0.47
PALB2-202ENST00000561514 APBA3O96018 575 aa12.1□□□□□ -0.47
PALB2-202ENST00000561514 USP35Q9P2H5 1018 aa12.1□□□□□ -0.47
PALB2-202ENST00000561514 ABCC6O95255 1503 aa12.1□□□□□ -0.47
PALB2-202ENST00000561514 NLRP6P59044 892 aa12.09□□□□□ -0.47
PALB2-202ENST00000561514 ARHGEF25Q86VW2 580 aa12.09□□□□□ -0.47
PALB2-202ENST00000561514 ZNF692Q9BU19 519 aaPredicted RBP12.09□□□□□ -0.47
PALB2-202ENST00000561514 COL18A1P39060 1754 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms