RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 CCDC192P0DO97 292 aa15.74■□□□□ 0.11
CSPG4P11-201ENST00000560634 ANKRD1Q15327 319 aa15.74■□□□□ 0.11
CSPG4P11-201ENST00000560634 ZNHIT6Q9NWK9 470 aaKnown RBP15.74■□□□□ 0.11
CSPG4P11-201ENST00000560634 AIMP1Q12904 312 aaKnown RBP15.74■□□□□ 0.11
CSPG4P11-201ENST00000560634 CT47B1P0C2W7 299 aaPredicted RBP15.74■□□□□ 0.11
CSPG4P11-201ENST00000560634 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.74■□□□□ 0.11
CSPG4P11-201ENST00000560634 CCDC27Q2M243 656 aa15.73■□□□□ 0.11
CSPG4P11-201ENST00000560634 WDR33Q9C0J8 1336 aaKnown RBP15.73■□□□□ 0.11
CSPG4P11-201ENST00000560634 SLC3A2P08195 630 aaKnown RBP15.73■□□□□ 0.11
CSPG4P11-201ENST00000560634 TXLNBQ8N3L3 684 aa15.73■□□□□ 0.11
CSPG4P11-201ENST00000560634 CNKSR2Q8WXI2 1034 aa15.73■□□□□ 0.11
CSPG4P11-201ENST00000560634 FIBPO43427 364 aa15.72■□□□□ 0.11
CSPG4P11-201ENST00000560634 PDIA4P13667 645 aaKnown RBP15.72■□□□□ 0.11
CSPG4P11-201ENST00000560634 GNAI2P04899 355 aa15.72■□□□□ 0.11
CSPG4P11-201ENST00000560634 FMNL2Q96PY5 1086 aa15.72■□□□□ 0.11
CSPG4P11-201ENST00000560634 DACH1Q9UI36 760 aa15.72■□□□□ 0.11
CSPG4P11-201ENST00000560634 ERLIN2O94905 339 aa15.72■□□□□ 0.11
CSPG4P11-201ENST00000560634 CCAR1Q8IX12 1150 aaKnown RBP15.71■□□□□ 0.11
CSPG4P11-201ENST00000560634 TSPYL1Q9H0U9 437 aa15.71■□□□□ 0.11
CSPG4P11-201ENST00000560634 CIZ1Q9ULV3 898 aaPredicted RBP15.71■□□□□ 0.11
CSPG4P11-201ENST00000560634 AXDND1Q5T1B0 1012 aaPredicted RBP15.71■□□□□ 0.11
CSPG4P11-201ENST00000560634 CDK5RAP3Q96JB5 506 aa15.71■□□□□ 0.11
CSPG4P11-201ENST00000560634 NLRP2Q9NX02 1062 aa15.71■□□□□ 0.11
CSPG4P11-201ENST00000560634 CYP46A1Q9Y6A2 500 aa15.71■□□□□ 0.11
CSPG4P11-201ENST00000560634 FGD6Q6ZV73 1430 aa15.71■□□□□ 0.1
CSPG4P11-201ENST00000560634 TTLL5Q6EMB2 1281 aa15.7■□□□□ 0.1
CSPG4P11-201ENST00000560634 KRT85P78386 507 aa15.7■□□□□ 0.1
CSPG4P11-201ENST00000560634 EXOSC9Q06265 439 aaKnown RBP15.7■□□□□ 0.1
CSPG4P11-201ENST00000560634 TWISTNBQ3B726 338 aaPredicted RBP15.7■□□□□ 0.1
CSPG4P11-201ENST00000560634 CCDC112Q8NEF3 446 aa15.7■□□□□ 0.1
CSPG4P11-201ENST00000560634 ATP2B1P20020 1258 aa15.7■□□□□ 0.1
CSPG4P11-201ENST00000560634 ERLIN1O75477 346 aa15.69■□□□□ 0.1
CSPG4P11-201ENST00000560634 NLRP6P59044 892 aa15.69■□□□□ 0.1
CSPG4P11-201ENST00000560634 PPP2R1AP30153 589 aa15.69■□□□□ 0.1
CSPG4P11-201ENST00000560634 SCAPERQ9BY12 1400 aa15.69■□□□□ 0.1
CSPG4P11-201ENST00000560634 SYCP1Q15431 976 aa15.69■□□□□ 0.1
CSPG4P11-201ENST00000560634 PPFIBP1Q86W92 1011 aa15.69■□□□□ 0.1
CSPG4P11-201ENST00000560634 SERPINC1P01008 464 aa15.68■□□□□ 0.1
CSPG4P11-201ENST00000560634 CCT4P50991 539 aaKnown RBP15.68■□□□□ 0.1
CSPG4P11-201ENST00000560634 STIM1Q13586 685 aa15.68■□□□□ 0.1
CSPG4P11-201ENST00000560634 PLEKHO1Q53GL0 409 aaPredicted RBP15.68■□□□□ 0.1
CSPG4P11-201ENST00000560634 FYB1O15117 783 aa15.68■□□□□ 0.1
CSPG4P11-201ENST00000560634 ZRSR2Q15696 482 aaKnown RBP15.68■□□□□ 0.1
CSPG4P11-201ENST00000560634 TRIM22Q8IYM9 498 aa15.68■□□□□ 0.1
CSPG4P11-201ENST00000560634 CDCA7LQ96GN5 454 aa15.68■□□□□ 0.1
CSPG4P11-201ENST00000560634 BACH2Q9BYV9 841 aa15.68■□□□□ 0.1
CSPG4P11-201ENST00000560634 GOLGA6L10A6NI86 522 aa15.68■□□□□ 0.1
CSPG4P11-201ENST00000560634 K7ELQ4 463 aaPredicted RBP15.68■□□□□ 0.1
CSPG4P11-201ENST00000560634 ANKRD50Q9ULJ7 1429 aa15.67■□□□□ 0.1
CSPG4P11-201ENST00000560634 SRCIN1Q9C0H9 1055 aa15.67■□□□□ 0.1
CSPG4P11-201ENST00000560634 TNMDQ9H2S6 317 aa15.67■□□□□ 0.1
CSPG4P11-201ENST00000560634 NCAPD3P42695 1498 aa15.67■□□□□ 0.1
CSPG4P11-201ENST00000560634 CBFA2T2O43439 604 aa15.67■□□□□ 0.1
CSPG4P11-201ENST00000560634 EIF3JO75822 258 aaKnown RBP15.67■□□□□ 0.1
CSPG4P11-201ENST00000560634 PRKAR2BP31323 418 aa15.67■□□□□ 0.1
CSPG4P11-201ENST00000560634 DNAJC2Q99543 621 aaKnown RBP15.67■□□□□ 0.1
CSPG4P11-201ENST00000560634 CCDC158Q5M9N0 1113 aa15.67■□□□□ 0.1
CSPG4P11-201ENST00000560634 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.67■□□□□ 0.1
CSPG4P11-201ENST00000560634 CABP2Q9NPB3 220 aa15.67■□□□□ 0.1
CSPG4P11-201ENST00000560634 FBXO3Q9UK99 471 aa15.66■□□□□ 0.1
CSPG4P11-201ENST00000560634 GOLGA6L7A0A1B0GV03 622 aa15.66■□□□□ 0.1
CSPG4P11-201ENST00000560634 CUX1P39880 1505 aa15.66■□□□□ 0.1
CSPG4P11-201ENST00000560634 BRPF1P55201 1214 aaPredicted RBP15.66■□□□□ 0.1
CSPG4P11-201ENST00000560634 IKQ13123 557 aaPredicted RBP15.66■□□□□ 0.1
CSPG4P11-201ENST00000560634 WDR63Q8IWG1 891 aa15.65■□□□□ 0.1
CSPG4P11-201ENST00000560634 ATF3P18847 181 aa15.65■□□□□ 0.1
CSPG4P11-201ENST00000560634 PNISRQ8TF01 805 aaKnown RBP15.65■□□□□ 0.1
CSPG4P11-201ENST00000560634 GRPEL1Q9HAV7 217 aa15.65■□□□□ 0.1
CSPG4P11-201ENST00000560634 BRPF3Q9ULD4 1205 aa15.65■□□□□ 0.1
CSPG4P11-201ENST00000560634 KRT18P05783 430 aaKnown RBP15.65■□□□□ 0.1
CSPG4P11-201ENST00000560634 ZSCAN31Q96LW9 406 aaPredicted RBP15.65■□□□□ 0.1
CSPG4P11-201ENST00000560634 KIAA0754O94854 1291 aa15.65■□□□□ 0.1
CSPG4P11-201ENST00000560634 NACAP1Q9BZK3 213 aa15.65■□□□□ 0.1
CSPG4P11-201ENST00000560634 LRRCC1Q9C099 1032 aa15.65■□□□□ 0.1
CSPG4P11-201ENST00000560634 GNL3LQ9NVN8 582 aaKnown RBP15.65■□□□□ 0.1
CSPG4P11-201ENST00000560634 PKNOX2Q96KN3 472 aa15.64■□□□□ 0.09
CSPG4P11-201ENST00000560634 ME1P48163 572 aa15.64■□□□□ 0.09
CSPG4P11-201ENST00000560634 SAMD1Q6SPF0 538 aaPredicted RBP15.64■□□□□ 0.09
CSPG4P11-201ENST00000560634 SPC24Q8NBT2 197 aa15.64■□□□□ 0.09
CSPG4P11-201ENST00000560634 ZNF428Q96B54 188 aa15.64■□□□□ 0.09
CSPG4P11-201ENST00000560634 RRBP1Q9P2E9 1410 aaKnown RBP15.64■□□□□ 0.09
CSPG4P11-201ENST00000560634 LARP1BQ659C4 914 aaKnown RBP15.63■□□□□ 0.09
CSPG4P11-201ENST00000560634 CFAP45Q9UL16 551 aa15.63■□□□□ 0.09
CSPG4P11-201ENST00000560634 ANKRD18AQ8IVF6 992 aa15.63■□□□□ 0.09
CSPG4P11-201ENST00000560634 FYCO1Q9BQS8 1478 aa15.63■□□□□ 0.09
CSPG4P11-201ENST00000560634 BCL11BQ9C0K0 894 aaPredicted RBP15.63■□□□□ 0.09
CSPG4P11-201ENST00000560634 NEFHP12036 1026 aa15.63■□□□□ 0.09
CSPG4P11-201ENST00000560634 CCDC181Q5TID7 509 aa15.63■□□□□ 0.09
CSPG4P11-201ENST00000560634 CEP57L1Q8IYX8 460 aa15.63■□□□□ 0.09
CSPG4P11-201ENST00000560634 KRI1Q8N9T8 703 aaKnown RBP15.62■□□□□ 0.09
CSPG4P11-201ENST00000560634 NOB1Q9ULX3 412 aaKnown RBP15.62■□□□□ 0.09
CSPG4P11-201ENST00000560634 HDGFL1Q5TGJ6 251 aa15.62■□□□□ 0.09
CSPG4P11-201ENST00000560634 IQCEQ6IPM2 695 aa15.62■□□□□ 0.09
CSPG4P11-201ENST00000560634 ATF7IPQ6VMQ6 1270 aa15.62■□□□□ 0.09
CSPG4P11-201ENST00000560634 KIF6Q6ZMV9 814 aa15.62■□□□□ 0.09
CSPG4P11-201ENST00000560634 DEF6Q9H4E7 631 aa15.62■□□□□ 0.09
CSPG4P11-201ENST00000560634 GPRASP1Q5JY77 1395 aa15.62■□□□□ 0.09
CSPG4P11-201ENST00000560634 PDCL2Q8N4E4 241 aa15.62■□□□□ 0.09
CSPG4P11-201ENST00000560634 CDKL5O76039 1030 aa15.62■□□□□ 0.09
CSPG4P11-201ENST00000560634 ZSCAN25Q6NSZ9 544 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms