RNA–Protein interactions for RNA: ENST00000560371.5

TRAF3-208, Transcript of TNF receptor associated factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF3, Length 7,640 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-208ENST00000560371 RTEL1-TNFRSF6BF6WH68 1400 aa16.27■□□□□ 0.2
TRAF3-208ENST00000560371 HDGFL1Q5TGJ6 251 aa16.27■□□□□ 0.2
TRAF3-208ENST00000560371 MTMR7Q9Y216 660 aa16.27■□□□□ 0.2
TRAF3-208ENST00000560371 XBP1P17861 261 aa16.27■□□□□ 0.2
TRAF3-208ENST00000560371 AAMPQ13685 434 aa16.27■□□□□ 0.2
TRAF3-208ENST00000560371 NBPF1Q3BBV0 1214 aa16.27■□□□□ 0.19
TRAF3-208ENST00000560371 ARAP1Q96P48 1450 aa16.27■□□□□ 0.19
TRAF3-208ENST00000560371 BRD4O60885 1362 aaPredicted RBP16.27■□□□□ 0.19
TRAF3-208ENST00000560371 SART3Q15020 963 aaKnown RBP16.26■□□□□ 0.19
TRAF3-208ENST00000560371 BRMS1Q9HCU9 246 aa16.26■□□□□ 0.19
TRAF3-208ENST00000560371 ZNF530Q6P9A1 599 aaPredicted RBP16.26■□□□□ 0.19
TRAF3-208ENST00000560371 TNNT3P45378 269 aaPredicted RBP16.25■□□□□ 0.19
TRAF3-208ENST00000560371 FSD1Q9BTV5 496 aa16.25■□□□□ 0.19
TRAF3-208ENST00000560371 KIAA1107Q9UPP5 1409 aa16.25■□□□□ 0.19
TRAF3-208ENST00000560371 R3HCC1Q9Y3T6 440 aaKnown RBP16.25■□□□□ 0.19
TRAF3-208ENST00000560371 SLC3A2P08195 630 aaKnown RBP16.25■□□□□ 0.19
TRAF3-208ENST00000560371 ERBINQ96RT1 1412 aa16.24■□□□□ 0.19
TRAF3-208ENST00000560371 SLC4A3P48751 1232 aa16.24■□□□□ 0.19
TRAF3-208ENST00000560371 FOSBP53539 338 aa16.24■□□□□ 0.19
TRAF3-208ENST00000560371 GNL3LQ9NVN8 582 aaKnown RBP16.24■□□□□ 0.19
TRAF3-208ENST00000560371 TWISTNBQ3B726 338 aaPredicted RBP16.24■□□□□ 0.19
TRAF3-208ENST00000560371 CCAR2Q8N163 923 aaKnown RBP16.24■□□□□ 0.19
TRAF3-208ENST00000560371 PSMA5P28066 241 aa16.23■□□□□ 0.19
TRAF3-208ENST00000560371 PPP2R1AP30153 589 aa16.23■□□□□ 0.19
TRAF3-208ENST00000560371 PATL2C9JE40 543 aaKnown RBP16.22■□□□□ 0.19
TRAF3-208ENST00000560371 PNISRQ8TF01 805 aaKnown RBP16.22■□□□□ 0.19
TRAF3-208ENST00000560371 GNAI2P04899 355 aa16.22■□□□□ 0.19
TRAF3-208ENST00000560371 MYL6BP14649 208 aa16.22■□□□□ 0.19
TRAF3-208ENST00000560371 EPRSP07814 1512 aaKnown RBP16.22■□□□□ 0.19
TRAF3-208ENST00000560371 MPHOSPH8Q99549 860 aa16.22■□□□□ 0.19
TRAF3-208ENST00000560371 IQGAP2Q13576 1575 aa16.22■□□□□ 0.19
TRAF3-208ENST00000560371 LAMC3Q9Y6N6 1575 aa16.22■□□□□ 0.19
TRAF3-208ENST00000560371 XPCQ01831 940 aaPredicted RBP16.22■□□□□ 0.19
TRAF3-208ENST00000560371 CCDC70Q6NSX1 233 aa16.22■□□□□ 0.19
TRAF3-208ENST00000560371 ERC1Q8IUD2 1116 aa16.22■□□□□ 0.19
TRAF3-208ENST00000560371 DNAJC2Q99543 621 aaKnown RBP16.21■□□□□ 0.19
TRAF3-208ENST00000560371 CFAP65Q6ZU64 1925 aaKnown RBP16.21■□□□□ 0.19
TRAF3-208ENST00000560371 SLC4A2P04920 1241 aa16.21■□□□□ 0.19
TRAF3-208ENST00000560371 CCDC158Q5M9N0 1113 aa16.21■□□□□ 0.19
TRAF3-208ENST00000560371 RPGRIP1LQ68CZ1 1315 aa16.2■□□□□ 0.18
TRAF3-208ENST00000560371 ANKRD30BQ9BXX2 1392 aa16.2■□□□□ 0.18
TRAF3-208ENST00000560371 TSHZ2Q9NRE2 1034 aa16.2■□□□□ 0.18
TRAF3-208ENST00000560371 CCDC61Q9Y6R9 512 aa16.2■□□□□ 0.18
TRAF3-208ENST00000560371 HIP1O00291 1037 aa16.2■□□□□ 0.18
TRAF3-208ENST00000560371 ZC3H6P61129 1189 aaKnown RBP16.2■□□□□ 0.18
TRAF3-208ENST00000560371 CCDC57Q2TAC2 916 aa16.19■□□□□ 0.18
TRAF3-208ENST00000560371 NUCB2P80303 420 aa16.19■□□□□ 0.18
TRAF3-208ENST00000560371 CCDC73Q6ZRK6 1079 aa16.19■□□□□ 0.18
TRAF3-208ENST00000560371 EXOSC9Q06265 439 aaKnown RBP16.19■□□□□ 0.18
TRAF3-208ENST00000560371 SASS6Q6UVJ0 657 aa16.19■□□□□ 0.18
TRAF3-208ENST00000560371 RRP12Q5JTH9 1297 aaKnown RBP16.19■□□□□ 0.18
TRAF3-208ENST00000560371 CD109Q6YHK3 1445 aa16.19■□□□□ 0.18
TRAF3-208ENST00000560371 HMGB2P26583 209 aaKnown RBP16.18■□□□□ 0.18
TRAF3-208ENST00000560371 TTC39AQ5SRH9 613 aa16.18■□□□□ 0.18
TRAF3-208ENST00000560371 C22orf23Q9BZE7 217 aa16.18■□□□□ 0.18
TRAF3-208ENST00000560371 ATP2B2Q01814 1243 aa16.18■□□□□ 0.18
TRAF3-208ENST00000560371 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.18■□□□□ 0.18
TRAF3-208ENST00000560371 CUL7Q14999 1698 aa16.18■□□□□ 0.18
TRAF3-208ENST00000560371 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.18■□□□□ 0.18
TRAF3-208ENST00000560371 ATAD2Q6PL18 1390 aa16.17■□□□□ 0.18
TRAF3-208ENST00000560371 CDC45O75419 566 aa16.17■□□□□ 0.18
TRAF3-208ENST00000560371 EPS15P42566 896 aa16.17■□□□□ 0.18
TRAF3-208ENST00000560371 RRS1Q15050 365 aaKnown RBP16.17■□□□□ 0.18
TRAF3-208ENST00000560371 BTBD11A6QL63 1104 aa16.17■□□□□ 0.18
TRAF3-208ENST00000560371 TIAM1Q13009 1591 aa16.17■□□□□ 0.18
TRAF3-208ENST00000560371 ZNF428Q96B54 188 aa16.16■□□□□ 0.18
TRAF3-208ENST00000560371 CCT4P50991 539 aaKnown RBP16.16■□□□□ 0.18
TRAF3-208ENST00000560371 KIF14Q15058 1648 aa16.16■□□□□ 0.18
TRAF3-208ENST00000560371 CHMP5Q9NZZ3 219 aa16.16■□□□□ 0.18
TRAF3-208ENST00000560371 KCNH5Q8NCM2 988 aa16.16■□□□□ 0.18
TRAF3-208ENST00000560371 KIAA0586Q9BVV6 1533 aa16.16■□□□□ 0.18
TRAF3-208ENST00000560371 ARHGEF11O15085 1522 aa16.15■□□□□ 0.18
TRAF3-208ENST00000560371 CDK13Q14004 1512 aaKnown RBP16.15■□□□□ 0.18
TRAF3-208ENST00000560371 RBM5P52756 815 aaKnown RBP eCLIP16.15■□□□□ 0.18
TRAF3-208ENST00000560371 CT47A1Q5JQC4 288 aaPredicted RBP16.15■□□□□ 0.18
TRAF3-208ENST00000560371 NUDT16Q96DE0 195 aaKnown RBP16.15■□□□□ 0.18
TRAF3-208ENST00000560371 SIL1Q9H173 461 aa16.15■□□□□ 0.18
TRAF3-208ENST00000560371 ODF2Q5BJF6 829 aa16.15■□□□□ 0.18
TRAF3-208ENST00000560371 DAPK1P53355 1430 aa16.14■□□□□ 0.18
TRAF3-208ENST00000560371 TSR2Q969E8 191 aaKnown RBP16.14■□□□□ 0.17
TRAF3-208ENST00000560371 NOB1Q9ULX3 412 aaKnown RBP16.14■□□□□ 0.17
TRAF3-208ENST00000560371 STARD3NLO95772 234 aa16.14■□□□□ 0.17
TRAF3-208ENST00000560371 SDF4Q9BRK5 362 aa16.14■□□□□ 0.17
TRAF3-208ENST00000560371 C1orf115Q9H7X2 142 aa16.13■□□□□ 0.17
TRAF3-208ENST00000560371 CDCA7LQ96GN5 454 aa16.13■□□□□ 0.17
TRAF3-208ENST00000560371 KDM4AO75164 1064 aa16.13■□□□□ 0.17
TRAF3-208ENST00000560371 NACAP1Q9BZK3 213 aa16.12■□□□□ 0.17
TRAF3-208ENST00000560371 HOMER1Q86YM7 354 aa16.12■□□□□ 0.17
TRAF3-208ENST00000560371 SRCIN1Q9C0H9 1055 aa16.12■□□□□ 0.17
TRAF3-208ENST00000560371 WWC2Q6AWC2 1192 aa16.12■□□□□ 0.17
TRAF3-208ENST00000560371 TMEM132AQ24JP5 1023 aa16.12■□□□□ 0.17
TRAF3-208ENST00000560371 OFD1O75665 1012 aa16.12■□□□□ 0.17
TRAF3-208ENST00000560371 PDCP20941 246 aa16.11■□□□□ 0.17
TRAF3-208ENST00000560371 ZNF592Q92610 1267 aa16.11■□□□□ 0.17
TRAF3-208ENST00000560371 ATP2B1P20020 1258 aa16.11■□□□□ 0.17
TRAF3-208ENST00000560371 PRXQ9BXM0 1461 aa16.11■□□□□ 0.17
TRAF3-208ENST00000560371 CCDC141Q6ZP82 1450 aa16.11■□□□□ 0.17
TRAF3-208ENST00000560371 OLFM4Q6UX06 510 aa16.11■□□□□ 0.17
TRAF3-208ENST00000560371 MAGI1Q96QZ7 1491 aaPredicted RBP16.11■□□□□ 0.17
TRAF3-208ENST00000560371 NAP1L1P55209 391 aaKnown RBP16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms