RNA–Protein interactions for RNA: ENST00000560213.1

LRRC28-217, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-217ENST00000560213 CPSF1Q10570 1443 aaKnown RBP22.68■■□□□ 1.22
LRRC28-217ENST00000560213 BRD4O60885 1362 aaPredicted RBP22.68■■□□□ 1.22
LRRC28-217ENST00000560213 KTN1Q86UP2 1357 aaKnown RBP22.68■■□□□ 1.22
LRRC28-217ENST00000560213 C11orf95C9JLR9 678 aaPredicted RBP22.67■■□□□ 1.22
LRRC28-217ENST00000560213 PLEKHG5O94827 1062 aa22.66■■□□□ 1.22
LRRC28-217ENST00000560213 ABTB2Q8N961 1025 aa22.66■■□□□ 1.22
LRRC28-217ENST00000560213 CD163L1Q9NR16 1453 aa22.65■■□□□ 1.22
LRRC28-217ENST00000560213 ALS2Q96Q42 1657 aa22.65■■□□□ 1.22
LRRC28-217ENST00000560213 COL22A1Q8NFW1 1626 aaPredicted RBP22.64■■□□□ 1.22
LRRC28-217ENST00000560213 A0A1W2PP64 1363 aa22.63■■□□□ 1.21
LRRC28-217ENST00000560213 TTC21BQ7Z4L5 1316 aa22.63■■□□□ 1.21
LRRC28-217ENST00000560213 HAP1P54257 671 aaPredicted RBP22.63■■□□□ 1.21
LRRC28-217ENST00000560213 MEX3CQ5U5Q3 659 aaKnown RBP22.63■■□□□ 1.21
LRRC28-217ENST00000560213 NUTM2GQ5VZR2 741 aa22.63■■□□□ 1.21
LRRC28-217ENST00000560213 MON2Q7Z3U7 1717 aa22.62■■□□□ 1.21
LRRC28-217ENST00000560213 SSH2Q76I76 1423 aa22.62■■□□□ 1.21
LRRC28-217ENST00000560213 ANKRD36BQ8N2N9 1353 aa22.62■■□□□ 1.21
LRRC28-217ENST00000560213 TTC21AQ8NDW8 1320 aa22.61■■□□□ 1.21
LRRC28-217ENST00000560213 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.61■■□□□ 1.21
LRRC28-217ENST00000560213 CABLES1Q8TDN4 633 aa22.61■■□□□ 1.21
LRRC28-217ENST00000560213 KIF7Q2M1P5 1343 aa22.6■■□□□ 1.21
LRRC28-217ENST00000560213 MED1Q15648 1581 aaPredicted RBP22.6■■□□□ 1.21
LRRC28-217ENST00000560213 NLRP13Q86W25 1043 aa22.6■■□□□ 1.21
LRRC28-217ENST00000560213 MYOM1P52179 1685 aa22.59■■□□□ 1.21
LRRC28-217ENST00000560213 ADAMTS2O95450 1211 aa22.59■■□□□ 1.21
LRRC28-217ENST00000560213 LRP6O75581 1613 aa22.59■■□□□ 1.21
LRRC28-217ENST00000560213 EDC4Q6P2E9 1401 aaKnown RBP22.58■■□□□ 1.21
LRRC28-217ENST00000560213 NLRP6P59044 892 aa22.58■■□□□ 1.21
LRRC28-217ENST00000560213 NRKQ7Z2Y5 1582 aa22.57■■□□□ 1.2
LRRC28-217ENST00000560213 PHF23Q9BUL5 403 aaPredicted RBP22.55■■□□□ 1.2
LRRC28-217ENST00000560213 CCDC7Q96M83 1385 aa22.54■■□□□ 1.2
LRRC28-217ENST00000560213 PIK3C2AO00443 1686 aa22.53■■□□□ 1.2
LRRC28-217ENST00000560213 NME9Q86XW9 330 aa22.53■■□□□ 1.2
LRRC28-217ENST00000560213 C8orf37Q96NL8 207 aa22.53■■□□□ 1.2
LRRC28-217ENST00000560213 PANK3Q9H999 370 aa22.53■■□□□ 1.2
LRRC28-217ENST00000560213 WASHC2AQ641Q2 1341 aa22.53■■□□□ 1.2
LRRC28-217ENST00000560213 ABCA3Q99758 1704 aa22.52■■□□□ 1.2
LRRC28-217ENST00000560213 NGLY1Q96IV0 654 aa22.52■■□□□ 1.2
LRRC28-217ENST00000560213 CARD14Q9BXL6 1004 aa22.52■■□□□ 1.2
LRRC28-217ENST00000560213 USP19O94966 1318 aa22.51■■□□□ 1.19
LRRC28-217ENST00000560213 MARF1Q9Y4F3 1742 aaKnown RBP22.51■■□□□ 1.19
LRRC28-217ENST00000560213 ZRANB1Q9UGI0 708 aa22.5■■□□□ 1.19
LRRC28-217ENST00000560213 CRYBG1Q9Y4K1 1723 aa22.5■■□□□ 1.19
LRRC28-217ENST00000560213 NSD3Q9BZ95 1437 aa22.49■■□□□ 1.19
LRRC28-217ENST00000560213 GCP02774 474 aa22.49■■□□□ 1.19
LRRC28-217ENST00000560213 USP31Q70CQ4 1352 aa22.49■■□□□ 1.19
LRRC28-217ENST00000560213 PHRF1Q9P1Y6 1649 aaKnown RBP22.48■■□□□ 1.19
LRRC28-217ENST00000560213 ZC3H6P61129 1189 aaKnown RBP22.47■■□□□ 1.19
LRRC28-217ENST00000560213 FYB1O15117 783 aa22.46■■□□□ 1.19
LRRC28-217ENST00000560213 KCNH5Q8NCM2 988 aa22.46■■□□□ 1.19
LRRC28-217ENST00000560213 COG3Q96JB2 828 aa22.46■■□□□ 1.19
LRRC28-217ENST00000560213 SOX12O15370 315 aa22.45■■□□□ 1.18
LRRC28-217ENST00000560213 PRDM11Q9NQV5 511 aa22.45■■□□□ 1.18
LRRC28-217ENST00000560213 AFF2P51816 1311 aa22.45■■□□□ 1.18
LRRC28-217ENST00000560213 CGNL1Q0VF96 1302 aa22.45■■□□□ 1.18
LRRC28-217ENST00000560213 FAM83GA6ND36 823 aa22.44■■□□□ 1.18
LRRC28-217ENST00000560213 SLIT3O75094 1523 aa22.44■■□□□ 1.18
LRRC28-217ENST00000560213 GGNBP2Q9H3C7 697 aa22.44■■□□□ 1.18
LRRC28-217ENST00000560213 KIAA0232Q92628 1395 aa22.43■■□□□ 1.18
LRRC28-217ENST00000560213 ZNF772Q68DY9 489 aaPredicted RBP22.43■■□□□ 1.18
LRRC28-217ENST00000560213 FNBP4Q8N3X1 1017 aaPredicted RBP22.43■■□□□ 1.18
LRRC28-217ENST00000560213 KNSTRNQ9Y448 316 aa22.43■■□□□ 1.18
LRRC28-217ENST00000560213 KIF20BQ96Q89 1820 aa22.43■■□□□ 1.18
LRRC28-217ENST00000560213 USP54Q70EL1 1684 aa22.42■■□□□ 1.18
LRRC28-217ENST00000560213 RGS17Q9UGC6 210 aaPredicted RBP22.42■■□□□ 1.18
LRRC28-217ENST00000560213 USP21Q9UK80 565 aa22.42■■□□□ 1.18
LRRC28-217ENST00000560213 ZBTB7CA1YPR0 619 aa22.41■■□□□ 1.18
LRRC28-217ENST00000560213 OVOS2A0A0J9YW53 1432 aa22.4■■□□□ 1.18
LRRC28-217ENST00000560213 OVOS2Q6IE36 1432 aa22.4■■□□□ 1.18
LRRC28-217ENST00000560213 CPDO75976 1380 aa22.4■■□□□ 1.18
LRRC28-217ENST00000560213 CHRNA2Q15822 529 aa22.4■■□□□ 1.18
LRRC28-217ENST00000560213 COL14A1Q05707 1796 aaKnown RBP22.39■■□□□ 1.17
LRRC28-217ENST00000560213 BTG4Q9NY30 223 aa22.38■■□□□ 1.17
LRRC28-217ENST00000560213 SLIT2O94813 1529 aa22.37■■□□□ 1.17
LRRC28-217ENST00000560213 ARHGEF25Q86VW2 580 aa22.37■■□□□ 1.17
LRRC28-217ENST00000560213 PLCH1Q4KWH8 1693 aa22.36■■□□□ 1.17
LRRC28-217ENST00000560213 UNC5CLQ8IV45 518 aa22.36■■□□□ 1.17
LRRC28-217ENST00000560213 QTRT2Q9H974 415 aaKnown RBP22.36■■□□□ 1.17
LRRC28-217ENST00000560213 NWD2Q9ULI1 1742 aa22.35■■□□□ 1.17
LRRC28-217ENST00000560213 PER1O15534 1290 aaPredicted RBP22.35■■□□□ 1.17
LRRC28-217ENST00000560213 NFAT5O94916 1531 aa22.35■■□□□ 1.17
LRRC28-217ENST00000560213 BCL9LQ86UU0 1499 aa22.34■■□□□ 1.17
LRRC28-217ENST00000560213 POTEAQ6S8J7 498 aa22.34■■□□□ 1.17
LRRC28-217ENST00000560213 TRPC5Q9UL62 973 aaPredicted RBP22.34■■□□□ 1.17
LRRC28-217ENST00000560213 NSD2O96028 1365 aa22.33■■□□□ 1.17
LRRC28-217ENST00000560213 AATKQ6ZMQ8 1374 aa22.33■■□□□ 1.17
LRRC28-217ENST00000560213 FBLN1P23142 703 aa22.32■■□□□ 1.16
LRRC28-217ENST00000560213 EVA1CP58658 441 aa22.32■■□□□ 1.16
LRRC28-217ENST00000560213 AMER1Q5JTC6 1135 aaPredicted RBP22.31■■□□□ 1.16
LRRC28-217ENST00000560213 STRN4Q9NRL3 753 aa22.31■■□□□ 1.16
LRRC28-217ENST00000560213 ANKRD26Q9UPS8 1709 aa22.31■■□□□ 1.16
LRRC28-217ENST00000560213 LTN1O94822 1766 aa22.3■■□□□ 1.16
LRRC28-217ENST00000560213 ZNF316A6NFI3 1004 aaPredicted RBP22.3■■□□□ 1.16
LRRC28-217ENST00000560213 MORC1Q86VD1 984 aa22.3■■□□□ 1.16
LRRC28-217ENST00000560213 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.3■■□□□ 1.16
LRRC28-217ENST00000560213 CCDC9Q9Y3X0 531 aaKnown RBP22.29■■□□□ 1.16
LRRC28-217ENST00000560213 CAMTA1Q9Y6Y1 1673 aa22.29■■□□□ 1.16
LRRC28-217ENST00000560213 COL18A1P39060 1754 aa22.28■■□□□ 1.16
LRRC28-217ENST00000560213 LMO7Q8WWI1 1683 aa22.28■■□□□ 1.16
LRRC28-217ENST00000560213 RXRBP28702 533 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms