RNA–Protein interactions for RNA: ENST00000560208.1

CRNDE-209, Transcript of colorectal neoplasia differentially expressed, human

TSL 2

Gene CRNDE, Length 735 nt, Biotype lincRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CRNDE-209	ENST00000560208	FAM83G	A6ND36	823 aa		33.3	■■■□□ 2.92
CRNDE-209	ENST00000560208	RALGAPB	Q86X10	1494 aa		33.29	■■■□□ 2.92
CRNDE-209	ENST00000560208	ACE	P12821	1306 aa		33.28	■■■□□ 2.92
CRNDE-209	ENST00000560208	PLEKHG3	A1L390	1219 aa		33.28	■■■□□ 2.92
CRNDE-209	ENST00000560208	POLR3A	O14802	1390 aa	Predicted RBP	33.28	■■■□□ 2.92
CRNDE-209	ENST00000560208	ATAD2	Q6PL18	1390 aa		33.28	■■■□□ 2.92
CRNDE-209	ENST00000560208	GLI3	P10071	1580 aa		33.28	■■■□□ 2.92
CRNDE-209	ENST00000560208	SRPK2	P78362	688 aa	Known RBP	33.27	■■■□□ 2.92
CRNDE-209	ENST00000560208	NBPF8	Q3BBV2	869 aa		33.26	■■■□□ 2.91
CRNDE-209	ENST00000560208	CRYBG1	Q9Y4K1	1723 aa		33.25	■■■□□ 2.91
CRNDE-209	ENST00000560208	VPS72	Q15906	364 aa		33.25	■■■□□ 2.91
CRNDE-209	ENST00000560208	CABP2	Q9NPB3	220 aa		33.24	■■■□□ 2.91
CRNDE-209	ENST00000560208	ROCK2	O75116	1388 aa	Known RBP	33.23	■■■□□ 2.91
CRNDE-209	ENST00000560208	EP400	Q96L91	3159 aa		33.21	■■■□□ 2.91
CRNDE-209	ENST00000560208	CCDC9	Q9Y3X0	531 aa	Known RBP	33.21	■■■□□ 2.91
CRNDE-209	ENST00000560208	COL14A1	Q05707	1796 aa	Known RBP	33.21	■■■□□ 2.91
CRNDE-209	ENST00000560208	PPIP5K1	Q6PFW1	1433 aa		33.2	■■■□□ 2.91
CRNDE-209	ENST00000560208	BTG4	Q9NY30	223 aa		33.19	■■■□□ 2.9
CRNDE-209	ENST00000560208	NRAP	Q86VF7	1730 aa		33.18	■■■□□ 2.9
CRNDE-209	ENST00000560208	NUTM2G	Q5VZR2	741 aa		33.17	■■■□□ 2.9
CRNDE-209	ENST00000560208	BRWD3	Q6RI45	1802 aa		33.16	■■■□□ 2.9
CRNDE-209	ENST00000560208	PHRF1	Q9P1Y6	1649 aa	Known RBP	33.14	■■■□□ 2.9
CRNDE-209	ENST00000560208	EVC2	Q86UK5	1308 aa		33.14	■■■□□ 2.9
CRNDE-209	ENST00000560208	PRDM11	Q9NQV5	511 aa		33.14	■■■□□ 2.9
CRNDE-209	ENST00000560208	ABTB2	Q8N961	1025 aa		33.13	■■■□□ 2.89
CRNDE-209	ENST00000560208	ONECUT3	O60422	494 aa	Predicted RBP	33.12	■■■□□ 2.89
CRNDE-209	ENST00000560208	SEPT12	Q8IYM1	358 aa		33.12	■■■□□ 2.89
CRNDE-209	ENST00000560208	CABP1	Q9NZU7	370 aa		33.12	■■■□□ 2.89
CRNDE-209	ENST00000560208	KIAA0232	Q92628	1395 aa		33.1	■■■□□ 2.89
CRNDE-209	ENST00000560208	TONSL	Q96HA7	1378 aa		33.1	■■■□□ 2.89
CRNDE-209	ENST00000560208	ZC3H6	P61129	1189 aa	Known RBP	33.09	■■■□□ 2.89
CRNDE-209	ENST00000560208	CHRNA2	Q15822	529 aa		33.06	■■■□□ 2.88
CRNDE-209	ENST00000560208	CCDC125	Q86Z20	511 aa		33.06	■■■□□ 2.88
CRNDE-209	ENST00000560208	BRD4	O60885	1362 aa	Predicted RBP	33.06	■■■□□ 2.88
CRNDE-209	ENST00000560208	FAM98C	Q17RN3	349 aa	Known RBP	33.04	■■■□□ 2.88
CRNDE-209	ENST00000560208	NLRP13	Q86W25	1043 aa		33.04	■■■□□ 2.88
CRNDE-209	ENST00000560208	CARD11	Q9BXL7	1154 aa		33.04	■■■□□ 2.88
CRNDE-209	ENST00000560208	CCER1	Q8TC90	406 aa	Predicted RBP	33.03	■■■□□ 2.88
CRNDE-209	ENST00000560208	USP19	O94966	1318 aa		33.02	■■■□□ 2.88
CRNDE-209	ENST00000560208	SPATA31A5	Q5VU36	1347 aa		33.02	■■■□□ 2.88
CRNDE-209	ENST00000560208	SPATA31A7	Q8IWB4	1347 aa		33.02	■■■□□ 2.88
CRNDE-209	ENST00000560208	USP6	P35125	1406 aa		33.02	■■■□□ 2.88
CRNDE-209	ENST00000560208		A0A0G2JS52	829 aa		33.02	■■■□□ 2.88
CRNDE-209	ENST00000560208	MYT1	Q01538	1121 aa		33.02	■■■□□ 2.88
CRNDE-209	ENST00000560208	NRK	Q7Z2Y5	1582 aa		33.01	■■■□□ 2.88
CRNDE-209	ENST00000560208	KRT27	Q7Z3Y8	459 aa		33.01	■■■□□ 2.87
CRNDE-209	ENST00000560208	GC	P02774	474 aa		32.97	■■■□□ 2.87
CRNDE-209	ENST00000560208	STRN4	Q9NRL3	753 aa		32.97	■■■□□ 2.87
CRNDE-209	ENST00000560208	CPD	O75976	1380 aa		32.96	■■■□□ 2.87
CRNDE-209	ENST00000560208	SBNO2	Q9Y2G9	1366 aa		32.96	■■■□□ 2.87
CRNDE-209	ENST00000560208	NLRP6	P59044	892 aa		32.95	■■■□□ 2.87
CRNDE-209	ENST00000560208	BLM	P54132	1417 aa	Predicted RBP	32.94	■■■□□ 2.86
CRNDE-209	ENST00000560208	SSH2	Q76I76	1423 aa		32.94	■■■□□ 2.86
CRNDE-209	ENST00000560208	AKAP12	Q02952	1782 aa		32.94	■■■□□ 2.86
CRNDE-209	ENST00000560208	ZNF692	Q9BU19	519 aa	Predicted RBP	32.94	■■■□□ 2.86
CRNDE-209	ENST00000560208	EVA1C	P58658	441 aa		32.93	■■■□□ 2.86
CRNDE-209	ENST00000560208	SPATA31A1	Q5TZJ5	1347 aa		32.93	■■■□□ 2.86
CRNDE-209	ENST00000560208	CAMTA1	Q9Y6Y1	1673 aa		32.91	■■■□□ 2.86
CRNDE-209	ENST00000560208	CLSPN	Q9HAW4	1339 aa		32.91	■■■□□ 2.86
CRNDE-209	ENST00000560208	PIK3C2A	O00443	1686 aa		32.9	■■■□□ 2.86
CRNDE-209	ENST00000560208	LMO7	Q8WWI1	1683 aa		32.9	■■■□□ 2.86
CRNDE-209	ENST00000560208	THSD7A	Q9UPZ6	1657 aa		32.89	■■■□□ 2.86
CRNDE-209	ENST00000560208	TTC21B	Q7Z4L5	1316 aa		32.88	■■■□□ 2.85
CRNDE-209	ENST00000560208	CPSF1	Q10570	1443 aa	Known RBP	32.87	■■■□□ 2.85
CRNDE-209	ENST00000560208	SF3B2	Q13435	895 aa	Known RBP	32.87	■■■□□ 2.85
CRNDE-209	ENST00000560208	SLIT3	O75094	1523 aa		32.87	■■■□□ 2.85
CRNDE-209	ENST00000560208	USP35	Q9P2H5	1018 aa		32.85	■■■□□ 2.85
CRNDE-209	ENST00000560208	ZBTB7C	A1YPR0	619 aa		32.84	■■■□□ 2.85
CRNDE-209	ENST00000560208	LARP1	Q6PKG0	1096 aa	Known RBP	32.84	■■■□□ 2.85
CRNDE-209	ENST00000560208	KTN1	Q86UP2	1357 aa	Known RBP	32.83	■■■□□ 2.85
CRNDE-209	ENST00000560208	TTC21A	Q8NDW8	1320 aa		32.82	■■■□□ 2.84
CRNDE-209	ENST00000560208	DEFB132	Q7Z7B7	95 aa		32.82	■■■□□ 2.84
CRNDE-209	ENST00000560208	FAM182B	Q5T319	152 aa		32.81	■■■□□ 2.84
CRNDE-209	ENST00000560208	ZRANB1	Q9UGI0	708 aa		32.81	■■■□□ 2.84
CRNDE-209	ENST00000560208	MON2	Q7Z3U7	1717 aa		32.8	■■■□□ 2.84
CRNDE-209	ENST00000560208	BARGIN	Q6ZT62	677 aa		32.79	■■■□□ 2.84
CRNDE-209	ENST00000560208	AATK	Q6ZMQ8	1374 aa		32.79	■■■□□ 2.84
CRNDE-209	ENST00000560208	COL5A2	P05997	1499 aa	Predicted RBP	32.79	■■■□□ 2.84
CRNDE-209	ENST00000560208	TMC1	Q8TDI8	760 aa		32.78	■■■□□ 2.84
CRNDE-209	ENST00000560208	TCP11L2	Q8N4U5	519 aa		32.77	■■■□□ 2.84
CRNDE-209	ENST00000560208	KCNH5	Q8NCM2	988 aa		32.76	■■■□□ 2.83
CRNDE-209	ENST00000560208	ST20-MTHFS	A0A0A6YYL1	179 aa		32.75	■■■□□ 2.83
CRNDE-209	ENST00000560208	COL18A1	P39060	1754 aa		32.75	■■■□□ 2.83
CRNDE-209	ENST00000560208	CD163L1	Q9NR16	1453 aa		32.74	■■■□□ 2.83
CRNDE-209	ENST00000560208	PUS7	Q96PZ0	661 aa	Known RBP	32.74	■■■□□ 2.83
CRNDE-209	ENST00000560208	SLC12A5	Q9H2X9	1139 aa		32.74	■■■□□ 2.83
CRNDE-209	ENST00000560208	SOX12	O15370	315 aa		32.73	■■■□□ 2.83
CRNDE-209	ENST00000560208	TESK2	Q96S53	571 aa		32.73	■■■□□ 2.83
CRNDE-209	ENST00000560208	THRAP3	Q9Y2W1	955 aa	Known RBP	32.73	■■■□□ 2.83
CRNDE-209	ENST00000560208	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	32.72	■■■□□ 2.83
CRNDE-209	ENST00000560208	ARHGEF25	Q86VW2	580 aa		32.72	■■■□□ 2.83
CRNDE-209	ENST00000560208	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	32.72	■■■□□ 2.83
CRNDE-209	ENST00000560208	RGPD1	P0DJD0	1748 aa		32.71	■■■□□ 2.83
CRNDE-209	ENST00000560208	BAG6	P46379	1132 aa		32.71	■■■□□ 2.83
CRNDE-209	ENST00000560208	CRB1	P82279	1406 aa		32.7	■■■□□ 2.83
CRNDE-209	ENST00000560208	RGPD5	Q99666	1765 aa		32.69	■■■□□ 2.82
CRNDE-209	ENST00000560208	PDE3B	Q13370	1112 aa		32.69	■■■□□ 2.82
CRNDE-209	ENST00000560208	AXIN2	Q9Y2T1	843 aa		32.69	■■■□□ 2.82
CRNDE-209	ENST00000560208	SLC24A1	O60721	1099 aa		32.68	■■■□□ 2.82
CRNDE-209	ENST00000560208	FAM196A	Q6ZSG2	479 aa		32.68	■■■□□ 2.82

Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms