RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 RGPD8O14715 1765 aaPredicted RBP17.99■□□□□ 0.47
SNX1-209ENST00000559961 PLEKHG3A1L390 1219 aa17.98■□□□□ 0.47
SNX1-209ENST00000559961 EVA1CP58658 441 aa17.98■□□□□ 0.47
SNX1-209ENST00000559961 MARF1Q9Y4F3 1742 aaKnown RBP17.98■□□□□ 0.47
SNX1-209ENST00000559961 NUTM2GQ5VZR2 741 aa17.97■□□□□ 0.47
SNX1-209ENST00000559961 ONECUT3O60422 494 aaPredicted RBP17.96■□□□□ 0.47
SNX1-209ENST00000559961 FAM98CQ17RN3 349 aaKnown RBP17.96■□□□□ 0.47
SNX1-209ENST00000559961 SIN3AQ96ST3 1273 aa17.96■□□□□ 0.47
SNX1-209ENST00000559961 NLRP13Q86W25 1043 aa17.95■□□□□ 0.46
SNX1-209ENST00000559961 CABP2Q9NPB3 220 aa17.95■□□□□ 0.46
SNX1-209ENST00000559961 EVC2Q86UK5 1308 aa17.95■□□□□ 0.46
SNX1-209ENST00000559961 ZC3H6P61129 1189 aaKnown RBP17.94■□□□□ 0.46
SNX1-209ENST00000559961 STRN4Q9NRL3 753 aa17.94■□□□□ 0.46
SNX1-209ENST00000559961 ATP7BP35670 1465 aa17.94■□□□□ 0.46
SNX1-209ENST00000559961 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.93■□□□□ 0.46
SNX1-209ENST00000559961 BLMP54132 1417 aaPredicted RBP17.93■□□□□ 0.46
SNX1-209ENST00000559961 POLR3AO14802 1390 aaPredicted RBP17.92■□□□□ 0.46
SNX1-209ENST00000559961 ROCK2O75116 1388 aaKnown RBP17.92■□□□□ 0.46
SNX1-209ENST00000559961 KIAA1210Q9ULL0 1709 aa17.92■□□□□ 0.46
SNX1-209ENST00000559961 ARHGEF28Q8N1W1 1705 aaKnown RBP17.92■□□□□ 0.46
SNX1-209ENST00000559961 CHRNA2Q15822 529 aa17.91■□□□□ 0.46
SNX1-209ENST00000559961 CABP1Q9NZU7 370 aa17.91■□□□□ 0.46
SNX1-209ENST00000559961 BRD4O60885 1362 aaPredicted RBP17.91■□□□□ 0.46
SNX1-209ENST00000559961 KIAA0232Q92628 1395 aa17.91■□□□□ 0.46
SNX1-209ENST00000559961 PPIP5K1Q6PFW1 1433 aa17.9■□□□□ 0.46
SNX1-209ENST00000559961 ITSN1Q15811 1721 aa17.9■□□□□ 0.46
SNX1-209ENST00000559961 BAG6P46379 1132 aa17.9■□□□□ 0.46
SNX1-209ENST00000559961 SPATA31A5Q5VU36 1347 aa17.9■□□□□ 0.46
SNX1-209ENST00000559961 SPATA31A7Q8IWB4 1347 aa17.9■□□□□ 0.46
SNX1-209ENST00000559961 NWD2Q9ULI1 1742 aa17.89■□□□□ 0.46
SNX1-209ENST00000559961 GLI3P10071 1580 aa17.89■□□□□ 0.45
SNX1-209ENST00000559961 ZBTB7CA1YPR0 619 aa17.88■□□□□ 0.45
SNX1-209ENST00000559961 NLRP6P59044 892 aa17.88■□□□□ 0.45
SNX1-209ENST00000559961 ZNF692Q9BU19 519 aaPredicted RBP17.88■□□□□ 0.45
SNX1-209ENST00000559961 TRPM3Q9HCF6 1732 aaPredicted RBP17.87■□□□□ 0.45
SNX1-209ENST00000559961 COL14A1Q05707 1796 aaKnown RBP17.87■□□□□ 0.45
SNX1-209ENST00000559961 USP35Q9P2H5 1018 aa17.87■□□□□ 0.45
SNX1-209ENST00000559961 GCP02774 474 aa17.86■□□□□ 0.45
SNX1-209ENST00000559961 PDE3BQ13370 1112 aa17.86■□□□□ 0.45
SNX1-209ENST00000559961 PLCH1Q4KWH8 1693 aa17.86■□□□□ 0.45
SNX1-209ENST00000559961 ALS2Q96Q42 1657 aa17.86■□□□□ 0.45
SNX1-209ENST00000559961 TONSLQ96HA7 1378 aa17.85■□□□□ 0.45
SNX1-209ENST00000559961 SPATA31A1Q5TZJ5 1347 aa17.84■□□□□ 0.45
SNX1-209ENST00000559961 DEFB132Q7Z7B7 95 aa17.84■□□□□ 0.45
SNX1-209ENST00000559961 CARD11Q9BXL7 1154 aa17.84■□□□□ 0.45
SNX1-209ENST00000559961 FAM196AQ6ZSG2 479 aa17.83■□□□□ 0.44
SNX1-209ENST00000559961 ABCA3Q99758 1704 aa17.82■□□□□ 0.44
SNX1-209ENST00000559961 TCP11L2Q8N4U5 519 aa17.82■□□□□ 0.44
SNX1-209ENST00000559961 USP19O94966 1318 aa17.81■□□□□ 0.44
SNX1-209ENST00000559961 KCNH5Q8NCM2 988 aa17.81■□□□□ 0.44
SNX1-209ENST00000559961 THRAP3Q9Y2W1 955 aaKnown RBP17.81■□□□□ 0.44
SNX1-209ENST00000559961 CPDO75976 1380 aa17.8■□□□□ 0.44
SNX1-209ENST00000559961 TRIM26Q12899 539 aaPredicted RBP17.8■□□□□ 0.44
SNX1-209ENST00000559961 BARGINQ6ZT62 677 aa17.8■□□□□ 0.44
SNX1-209ENST00000559961 C11orf95C9JLR9 678 aaPredicted RBP17.79■□□□□ 0.44
SNX1-209ENST00000559961 LARP1Q6PKG0 1096 aaKnown RBP17.79■□□□□ 0.44
SNX1-209ENST00000559961 USP6P35125 1406 aa17.79■□□□□ 0.44
SNX1-209ENST00000559961 SLC24A1O60721 1099 aa17.78■□□□□ 0.44
SNX1-209ENST00000559961 FAM182BQ5T319 152 aa17.78■□□□□ 0.44
SNX1-209ENST00000559961 TMC1Q8TDI8 760 aa17.78■□□□□ 0.44
SNX1-209ENST00000559961 SSH2Q76I76 1423 aa17.78■□□□□ 0.44
SNX1-209ENST00000559961 TTC21AQ8NDW8 1320 aa17.77■□□□□ 0.44
SNX1-209ENST00000559961 HDGFL2Q7Z4V5 671 aaPredicted RBP17.77■□□□□ 0.44
SNX1-209ENST00000559961 TTC21BQ7Z4L5 1316 aa17.76■□□□□ 0.43
SNX1-209ENST00000559961 CSB-PGBD3P0DP91 1061 aa17.76■□□□□ 0.43
SNX1-209ENST00000559961 EN1Q05925 392 aaPredicted RBP17.76■□□□□ 0.43
SNX1-209ENST00000559961 TOM1L2Q6ZVM7 507 aa17.76■□□□□ 0.43
SNX1-209ENST00000559961 TOPAZ1Q8N9V7 1692 aa17.76■□□□□ 0.43
SNX1-209ENST00000559961 QRICH2Q9H0J4 1663 aa17.76■□□□□ 0.43
SNX1-209ENST00000559961 SOX12O15370 315 aa17.75■□□□□ 0.43
SNX1-209ENST00000559961 KTN1Q86UP2 1357 aaKnown RBP17.75■□□□□ 0.43
SNX1-209ENST00000559961 NRAPQ86VF7 1730 aa17.75■□□□□ 0.43
SNX1-209ENST00000559961 TRIM37O94972 964 aa17.74■□□□□ 0.43
SNX1-209ENST00000559961 APBA3O96018 575 aa17.74■□□□□ 0.43
SNX1-209ENST00000559961 TERF2IPQ9NYB0 399 aa17.74■□□□□ 0.43
SNX1-209ENST00000559961 AATKQ6ZMQ8 1374 aa17.74■□□□□ 0.43
SNX1-209ENST00000559961 TRPM1Q7Z4N2 1603 aa17.72■□□□□ 0.43
SNX1-209ENST00000559961 BRWD3Q6RI45 1802 aa17.72■□□□□ 0.43
SNX1-209ENST00000559961 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.72■□□□□ 0.43
SNX1-209ENST00000559961 CDCA7Q9BWT1 371 aaPredicted RBP17.72■□□□□ 0.43
SNX1-209ENST00000559961 PHRF1Q9P1Y6 1649 aaKnown RBP17.72■□□□□ 0.43
SNX1-209ENST00000559961 DDB1Q16531 1140 aa17.7■□□□□ 0.42
SNX1-209ENST00000559961 NBPF14Q5TI25 921 aa17.7■□□□□ 0.42
SNX1-209ENST00000559961 CRB1P82279 1406 aa17.7■□□□□ 0.42
SNX1-209ENST00000559961 CAMTA1Q9Y6Y1 1673 aa17.7■□□□□ 0.42
SNX1-209ENST00000559961 CRYBG1Q9Y4K1 1723 aa17.69■□□□□ 0.42
SNX1-209ENST00000559961 SBNO2Q9Y2G9 1366 aa17.69■□□□□ 0.42
SNX1-209ENST00000559961 PSDA5PKW4 1024 aaPredicted RBP17.69■□□□□ 0.42
SNX1-209ENST00000559961 EP400Q96L91 3159 aa17.69■□□□□ 0.42
SNX1-209ENST00000559961 NRKQ7Z2Y5 1582 aa17.69■□□□□ 0.42
SNX1-209ENST00000559961 ARHGEF25Q86VW2 580 aa17.68■□□□□ 0.42
SNX1-209ENST00000559961 PUS7Q96PZ0 661 aaKnown RBP17.68■□□□□ 0.42
SNX1-209ENST00000559961 COL5A2P05997 1499 aaPredicted RBP17.68■□□□□ 0.42
SNX1-209ENST00000559961 WDR17Q8IZU2 1322 aa17.68■□□□□ 0.42
SNX1-209ENST00000559961 EZH2Q15910 746 aaKnown RBP17.67■□□□□ 0.42
SNX1-209ENST00000559961 PARD3Q8TEW0 1356 aa17.66■□□□□ 0.42
SNX1-209ENST00000559961 CPSF1Q10570 1443 aaKnown RBP17.65■□□□□ 0.42
SNX1-209ENST00000559961 THSD7AQ9UPZ6 1657 aa17.65■□□□□ 0.42
SNX1-209ENST00000559961 R3HDM1Q15032 1099 aaKnown RBP17.65■□□□□ 0.42
SNX1-209ENST00000559961 SLC12A5Q9H2X9 1139 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms