RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 TSHZ2Q9NRE2 1034 aa7.68□□□□□ -1.18
SPG11-220ENST00000559933 PCDHGA10Q9Y5H3 936 aa7.68□□□□□ -1.18
SPG11-220ENST00000559933 UGGT1Q9NYU2 1555 aa7.67□□□□□ -1.18
SPG11-220ENST00000559933 FER1L4A9Z1Z3 1794 aa7.67□□□□□ -1.18
SPG11-220ENST00000559933 HRCP23327 699 aa7.67□□□□□ -1.18
SPG11-220ENST00000559933 LMTK2Q8IWU2 1503 aa7.67□□□□□ -1.18
SPG11-220ENST00000559933 MADDQ8WXG6 1647 aa7.67□□□□□ -1.18
SPG11-220ENST00000559933 ZC3H13Q5T200 1668 aaKnown RBP7.67□□□□□ -1.18
SPG11-220ENST00000559933 PDIA6Q15084 440 aa7.66□□□□□ -1.18
SPG11-220ENST00000559933 DDX12PQ92771 950 aa7.66□□□□□ -1.18
SPG11-220ENST00000559933 SIN3AQ96ST3 1273 aa7.66□□□□□ -1.18
SPG11-220ENST00000559933 SLC4A5Q9BY07 1137 aa7.66□□□□□ -1.18
SPG11-220ENST00000559933 VPS9D1Q9Y2B5 631 aa7.66□□□□□ -1.18
SPG11-220ENST00000559933 NPATQ14207 1427 aa7.66□□□□□ -1.18
SPG11-220ENST00000559933 PLA2R1Q13018 1463 aa7.66□□□□□ -1.18
SPG11-220ENST00000559933 RIMS1Q86UR5 1692 aaKnown RBP7.66□□□□□ -1.18
SPG11-220ENST00000559933 GOLGA8CPA6NN73 597 aa7.65□□□□□ -1.18
SPG11-220ENST00000559933 KANK1Q14678 1352 aa7.65□□□□□ -1.18
SPG11-220ENST00000559933 SPHKAPQ2M3C7 1700 aa7.65□□□□□ -1.18
SPG11-220ENST00000559933 CFAP65Q6ZU64 1925 aaKnown RBP7.65□□□□□ -1.18
SPG11-220ENST00000559933 WASHC2CQ9Y4E1 1318 aa7.65□□□□□ -1.18
SPG11-220ENST00000559933 CLTCL1P53675 1640 aa7.64□□□□□ -1.19
SPG11-220ENST00000559933 SYNMO15061 1565 aa7.64□□□□□ -1.19
SPG11-220ENST00000559933 ANKRD30BQ9BXX2 1392 aa7.64□□□□□ -1.19
SPG11-220ENST00000559933 PPP1R3GB7ZBB8 358 aa7.64□□□□□ -1.19
SPG11-220ENST00000559933 HRO43593 1189 aa7.64□□□□□ -1.19
SPG11-220ENST00000559933 NEUROD1Q13562 356 aa7.64□□□□□ -1.19
SPG11-220ENST00000559933 NBR1Q14596 966 aa7.64□□□□□ -1.19
SPG11-220ENST00000559933 RBM33Q96EV2 1170 aaKnown RBP7.64□□□□□ -1.19
SPG11-220ENST00000559933 ADAMTSL3P82987 1691 aa7.63□□□□□ -1.19
SPG11-220ENST00000559933 PREX1Q8TCU6 1659 aa7.63□□□□□ -1.19
SPG11-220ENST00000559933 FBXO31Q5XUX0 539 aaPredicted RBP7.63□□□□□ -1.19
SPG11-220ENST00000559933 ZBED2Q9BTP6 218 aa7.63□□□□□ -1.19
SPG11-220ENST00000559933 NBPF3Q9H094 633 aa7.63□□□□□ -1.19
SPG11-220ENST00000559933 ARIH1Q9Y4X5 557 aaPredicted RBP7.63□□□□□ -1.19
SPG11-220ENST00000559933 MROH2AA6NES4 1674 aa7.63□□□□□ -1.19
SPG11-220ENST00000559933 C3P01024 1663 aa7.63□□□□□ -1.19
SPG11-220ENST00000559933 TRPM2O94759 1503 aa7.62□□□□□ -1.19
SPG11-220ENST00000559933 CEBPAP49715 358 aaPredicted RBP7.62□□□□□ -1.19
SPG11-220ENST00000559933 PLCB2Q00722 1185 aa7.62□□□□□ -1.19
SPG11-220ENST00000559933 C6orf132Q5T0Z8 1188 aa7.62□□□□□ -1.19
SPG11-220ENST00000559933 MRPL50Q8N5N7 158 aaKnown RBP7.62□□□□□ -1.19
SPG11-220ENST00000559933 FBXO41Q8TF61 875 aa7.62□□□□□ -1.19
SPG11-220ENST00000559933 HCSTQ9UBK5 93 aa7.62□□□□□ -1.19
SPG11-220ENST00000559933 ERVK-7P63135 1459 aa7.62□□□□□ -1.19
SPG11-220ENST00000559933 GRXCR2A6NFK2 248 aa7.61□□□□□ -1.19
SPG11-220ENST00000559933 MAP3K7O43318 606 aa7.61□□□□□ -1.19
SPG11-220ENST00000559933 KCTD12Q96CX2 325 aaKnown RBP7.61□□□□□ -1.19
SPG11-220ENST00000559933 PTPRTO14522 1441 aa7.61□□□□□ -1.19
SPG11-220ENST00000559933 ZMYM3Q14202 1370 aa7.59□□□□□ -1.19
SPG11-220ENST00000559933 SPATA31D1Q6ZQQ2 1576 aa7.59□□□□□ -1.19
SPG11-220ENST00000559933 RPRD2Q5VT52 1461 aaKnown RBP7.59□□□□□ -1.19
SPG11-220ENST00000559933 CCDC144AA2RUR9 1427 aa7.59□□□□□ -1.19
SPG11-220ENST00000559933 NOS1P29475 1434 aa7.59□□□□□ -1.19
SPG11-220ENST00000559933 ARHGAP31Q2M1Z3 1444 aa7.59□□□□□ -1.19
SPG11-220ENST00000559933 PIK3C2BO00750 1634 aa7.59□□□□□ -1.19
SPG11-220ENST00000559933 MYO5BQ9ULV0 1848 aa7.59□□□□□ -1.19
SPG11-220ENST00000559933 COL9A1P20849 921 aa7.58□□□□□ -1.2
SPG11-220ENST00000559933 EN1Q05925 392 aaPredicted RBP7.58□□□□□ -1.2
SPG11-220ENST00000559933 ARHGEF1Q92888 912 aaKnown RBP7.58□□□□□ -1.2
SPG11-220ENST00000559933 ESF1Q9H501 851 aaKnown RBP7.58□□□□□ -1.2
SPG11-220ENST00000559933 RABGEF1Q9UJ41 708 aa7.58□□□□□ -1.2
SPG11-220ENST00000559933 MYO3AQ8NEV4 1616 aa7.57□□□□□ -1.2
SPG11-220ENST00000559933 CNTLNQ9NXG0 1405 aa7.57□□□□□ -1.2
SPG11-220ENST00000559933 ADGRB3O60242 1522 aa7.57□□□□□ -1.2
SPG11-220ENST00000559933 PTPRMP28827 1452 aa7.56□□□□□ -1.2
SPG11-220ENST00000559933 BHMG1C9JSJ3 638 aaPredicted RBP7.56□□□□□ -1.2
SPG11-220ENST00000559933 HAP1P54257 671 aaPredicted RBP7.56□□□□□ -1.2
SPG11-220ENST00000559933 PROX2Q3B8N5 592 aa7.56□□□□□ -1.2
SPG11-220ENST00000559933 WNT2BQ93097 391 aa7.56□□□□□ -1.2
SPG11-220ENST00000559933 TNRQ92752 1358 aa7.56□□□□□ -1.2
SPG11-220ENST00000559933 TONSLQ96HA7 1378 aa7.56□□□□□ -1.2
SPG11-220ENST00000559933 CLSPNQ9HAW4 1339 aa7.55□□□□□ -1.2
SPG11-220ENST00000559933 KIF1BO60333 1816 aa7.55□□□□□ -1.2
SPG11-220ENST00000559933 SPATA31E1Q6ZUB1 1445 aa7.55□□□□□ -1.2
SPG11-220ENST00000559933 ONECUT3O60422 494 aaPredicted RBP7.55□□□□□ -1.2
SPG11-220ENST00000559933 RGL3Q3MIN7 710 aa7.55□□□□□ -1.2
SPG11-220ENST00000559933 KCNV2Q8TDN2 545 aa7.55□□□□□ -1.2
SPG11-220ENST00000559933 KIAA1468Q9P260 1216 aa7.55□□□□□ -1.2
SPG11-220ENST00000559933 TMEM131LA2VDJ0 1609 aa7.55□□□□□ -1.2
SPG11-220ENST00000559933 ACIN1Q9UKV3 1341 aaKnown RBP7.54□□□□□ -1.2
SPG11-220ENST00000559933 PTPN5P54829 565 aa7.54□□□□□ -1.2
SPG11-220ENST00000559933 IDI1Q13907 227 aa7.54□□□□□ -1.2
SPG11-220ENST00000559933 TSR1Q2NL82 804 aaKnown RBP7.54□□□□□ -1.2
SPG11-220ENST00000559933 NUTM2DQ5VT03 806 aaPredicted RBP7.54□□□□□ -1.2
SPG11-220ENST00000559933 PACS2Q86VP3 889 aa7.54□□□□□ -1.2
SPG11-220ENST00000559933 CERKQ8TCT0 537 aa7.54□□□□□ -1.2
SPG11-220ENST00000559933 L3MBTL2Q969R5 705 aa7.54□□□□□ -1.2
SPG11-220ENST00000559933 IFT172Q9UG01 1749 aa7.54□□□□□ -1.2
SPG11-220ENST00000559933 UBR1Q8IWV7 1749 aa7.53□□□□□ -1.2
SPG11-220ENST00000559933 TRIM6-TRIM34B2RNG4 842 aa7.53□□□□□ -1.2
SPG11-220ENST00000559933 LAPTM4BQ86VI4 370 aa7.53□□□□□ -1.2
SPG11-220ENST00000559933 ANKK1Q8NFD2 765 aa7.53□□□□□ -1.2
SPG11-220ENST00000559933 KDM2AQ9Y2K7 1162 aa7.53□□□□□ -1.2
SPG11-220ENST00000559933 NEXMIFQ5QGS0 1516 aa7.52□□□□□ -1.2
SPG11-220ENST00000559933 PPLO60437 1756 aa7.52□□□□□ -1.21
SPG11-220ENST00000559933 A2ML1A8K2U0 1454 aa7.52□□□□□ -1.21
SPG11-220ENST00000559933 ZNF326Q5BKZ1 582 aaKnown RBP7.52□□□□□ -1.21
SPG11-220ENST00000559933 ZNF142P52746 1687 aaPredicted RBP7.51□□□□□ -1.21
SPG11-220ENST00000559933 CEP170BQ9Y4F5 1589 aaPredicted RBP7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 116.8 ms