RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 HSP90AB4PQ58FF6 505 aa10.27□□□□□ -0.76
USP3-211ENST00000559257 RINLQ6ZS11 566 aa10.27□□□□□ -0.76
USP3-211ENST00000559257 SUGP1Q8IWZ8 645 aaKnown RBP10.27□□□□□ -0.76
USP3-211ENST00000559257 TNPO1Q92973 898 aaKnown RBP10.27□□□□□ -0.76
USP3-211ENST00000559257 ANKRD33BA6NCL7 494 aa10.27□□□□□ -0.77
USP3-211ENST00000559257 ERICH4A6NGS2 130 aa10.27□□□□□ -0.77
USP3-211ENST00000559257 NEFHP12036 1026 aa10.27□□□□□ -0.77
USP3-211ENST00000559257 HDAC1Q13547 482 aaPredicted RBP10.27□□□□□ -0.77
USP3-211ENST00000559257 CCDC27Q2M243 656 aa10.27□□□□□ -0.77
USP3-211ENST00000559257 SKAP1Q86WV1 359 aa10.27□□□□□ -0.77
USP3-211ENST00000559257 JARID2Q92833 1246 aaPredicted RBP10.27□□□□□ -0.77
USP3-211ENST00000559257 TBC1D32Q96NH3 1257 aa10.27□□□□□ -0.77
USP3-211ENST00000559257 ARHGAP35Q9NRY4 1499 aa10.26□□□□□ -0.77
USP3-211ENST00000559257 IPO7O95373 1038 aaKnown RBP10.26□□□□□ -0.77
USP3-211ENST00000559257 DDIT3P35638 169 aa10.26□□□□□ -0.77
USP3-211ENST00000559257 KLHL40Q2TBA0 621 aa10.26□□□□□ -0.77
USP3-211ENST00000559257 KANK1Q14678 1352 aa10.26□□□□□ -0.77
USP3-211ENST00000559257 IPO8O15397 1037 aaKnown RBP10.26□□□□□ -0.77
USP3-211ENST00000559257 TSGA10IPQ3SY00 556 aa10.26□□□□□ -0.77
USP3-211ENST00000559257 KIF18AQ8NI77 898 aa10.26□□□□□ -0.77
USP3-211ENST00000559257 POLKQ9UBT6 870 aa10.26□□□□□ -0.77
USP3-211ENST00000559257 TIAM1Q13009 1591 aa10.26□□□□□ -0.77
USP3-211ENST00000559257 MYO1CO00159 1063 aa10.25□□□□□ -0.77
USP3-211ENST00000559257 TMX1Q9H3N1 280 aa10.25□□□□□ -0.77
USP3-211ENST00000559257 TONSLQ96HA7 1378 aa10.25□□□□□ -0.77
USP3-211ENST00000559257 POLR1AO95602 1720 aaPredicted RBP10.25□□□□□ -0.77
USP3-211ENST00000559257 NCOA1Q15788 1441 aa10.25□□□□□ -0.77
USP3-211ENST00000559257 NOLC1Q14978 699 aaKnown RBP eCLIP10.25□□□□□ -0.77
USP3-211ENST00000559257 MAP9Q49MG5 647 aa10.25□□□□□ -0.77
USP3-211ENST00000559257 TXLNBQ8N3L3 684 aa10.25□□□□□ -0.77
USP3-211ENST00000559257 TRERF1Q96PN7 1200 aa10.25□□□□□ -0.77
USP3-211ENST00000559257 TSPAN18Q96SJ8 248 aa10.25□□□□□ -0.77
USP3-211ENST00000559257 CRBNQ96SW2 442 aa10.25□□□□□ -0.77
USP3-211ENST00000559257 TOMM22Q9NS69 142 aa10.25□□□□□ -0.77
USP3-211ENST00000559257 ATG3Q9NT62 314 aa10.25□□□□□ -0.77
USP3-211ENST00000559257 CFAP43Q8NDM7 1665 aa10.24□□□□□ -0.77
USP3-211ENST00000559257 CTTNBP2Q8WZ74 1663 aa10.24□□□□□ -0.77
USP3-211ENST00000559257 H0YHG0 523 aa10.24□□□□□ -0.77
USP3-211ENST00000559257 SARNPP82979 210 aaKnown RBP10.24□□□□□ -0.77
USP3-211ENST00000559257 FAM50AQ14320 339 aaKnown RBP10.24□□□□□ -0.77
USP3-211ENST00000559257 NOM1Q5C9Z4 860 aaKnown RBP10.24□□□□□ -0.77
USP3-211ENST00000559257 CEP89Q96ST8 783 aa10.24□□□□□ -0.77
USP3-211ENST00000559257 TACO1Q9BSH4 297 aaKnown RBP10.24□□□□□ -0.77
USP3-211ENST00000559257 CLEC17AQ6ZS10 378 aa10.23□□□□□ -0.77
USP3-211ENST00000559257 DRC1Q96MC2 740 aa10.23□□□□□ -0.77
USP3-211ENST00000559257 NUCKS1Q9H1E3 243 aaKnown RBP10.23□□□□□ -0.77
USP3-211ENST00000559257 RPS6KL1Q9Y6S9 549 aa10.23□□□□□ -0.77
USP3-211ENST00000559257 MAPK8IP3Q9UPT6 1336 aa10.23□□□□□ -0.77
USP3-211ENST00000559257 IGF1RP08069 1367 aa10.23□□□□□ -0.77
USP3-211ENST00000559257 SRPK2P78362 688 aaKnown RBP10.23□□□□□ -0.77
USP3-211ENST00000559257 CCDC7Q96M83 1385 aa10.23□□□□□ -0.77
USP3-211ENST00000559257 CWC15Q9P013 229 aaKnown RBP10.23□□□□□ -0.77
USP3-211ENST00000559257 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.23□□□□□ -0.77
USP3-211ENST00000559257 ROCK2O75116 1388 aaKnown RBP10.22□□□□□ -0.77
USP3-211ENST00000559257 LRPPRCP42704 1394 aaKnown RBP10.22□□□□□ -0.77
USP3-211ENST00000559257 TTC31Q49AM3 519 aaPredicted RBP10.22□□□□□ -0.77
USP3-211ENST00000559257 FAM184AQ8NB25 1140 aa10.22□□□□□ -0.77
USP3-211ENST00000559257 ZNF446Q9NWS9 450 aa10.22□□□□□ -0.77
USP3-211ENST00000559257 DDX49Q9Y6V7 483 aaKnown RBP10.22□□□□□ -0.77
USP3-211ENST00000559257 MAP2K2P36507 400 aa10.22□□□□□ -0.77
USP3-211ENST00000559257 NCBP1Q09161 790 aaKnown RBP10.22□□□□□ -0.77
USP3-211ENST00000559257 RABEP1Q15276 862 aa10.22□□□□□ -0.77
USP3-211ENST00000559257 MCTP2Q6DN12 878 aa10.22□□□□□ -0.77
USP3-211ENST00000559257 ERCC4Q92889 916 aaPredicted RBP10.22□□□□□ -0.77
USP3-211ENST00000559257 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.22□□□□□ -0.77
USP3-211ENST00000559257 TPM3P06753 285 aa10.21□□□□□ -0.77
USP3-211ENST00000559257 TNNT1P13805 278 aa10.21□□□□□ -0.77
USP3-211ENST00000559257 GYS2P54840 703 aa10.21□□□□□ -0.77
USP3-211ENST00000559257 RAB3GAP1Q15042 981 aa10.21□□□□□ -0.77
USP3-211ENST00000559257 PPP2R5AQ15172 486 aa10.21□□□□□ -0.77
USP3-211ENST00000559257 ANKRD20A12PQ8NF67 263 aa10.21□□□□□ -0.77
USP3-211ENST00000559257 TEX13AQ9BXU3 409 aaPredicted RBP10.21□□□□□ -0.77
USP3-211ENST00000559257 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.21□□□□□ -0.78
USP3-211ENST00000559257 IRX1P78414 480 aaPredicted RBP10.21□□□□□ -0.78
USP3-211ENST00000559257 C1QTNF12Q5T7M4 302 aa10.21□□□□□ -0.78
USP3-211ENST00000559257 ANAPC4Q9UJX5 808 aa10.21□□□□□ -0.78
USP3-211ENST00000559257 EFCAB5A4FU69 1503 aa10.2□□□□□ -0.78
USP3-211ENST00000559257 RIOK3O14730 519 aaKnown RBP10.2□□□□□ -0.78
USP3-211ENST00000559257 ZSCAN26Q16670 478 aa10.2□□□□□ -0.78
USP3-211ENST00000559257 UVSSAQ2YD98 709 aa10.2□□□□□ -0.78
USP3-211ENST00000559257 C20orf194Q5TEA3 1177 aa10.2□□□□□ -0.78
USP3-211ENST00000559257 ARMCX6Q7L4S7 300 aa10.2□□□□□ -0.78
USP3-211ENST00000559257 C10orf67Q8IYJ2 551 aa10.2□□□□□ -0.78
USP3-211ENST00000559257 KIF1BPQ96EK5 621 aa10.2□□□□□ -0.78
USP3-211ENST00000559257 JAKMIP3Q5VZ66 844 aa10.19□□□□□ -0.78
USP3-211ENST00000559257 SYT10Q6XYQ8 523 aa10.19□□□□□ -0.78
USP3-211ENST00000559257 NFATC2IPQ8NCF5 419 aa10.19□□□□□ -0.78
USP3-211ENST00000559257 RBSNQ9H1K0 784 aa10.19□□□□□ -0.78
USP3-211ENST00000559257 KDM5BQ9UGL1 1544 aa10.19□□□□□ -0.78
USP3-211ENST00000559257 UHRF1BP1LA0JNW5 1464 aa10.19□□□□□ -0.78
USP3-211ENST00000559257 PLEKHG2Q9H7P9 1386 aa10.19□□□□□ -0.78
USP3-211ENST00000559257 ANKRD18BA2A2Z9 1011 aa10.18□□□□□ -0.78
USP3-211ENST00000559257 MAGEA9P43362 315 aa10.18□□□□□ -0.78
USP3-211ENST00000559257 DNAJC14Q6Y2X3 702 aaPredicted RBP10.18□□□□□ -0.78
USP3-211ENST00000559257 SRLQ86TD4 932 aa10.18□□□□□ -0.78
USP3-211ENST00000559257 SUDS3Q9H7L9 328 aaPredicted RBP10.18□□□□□ -0.78
USP3-211ENST00000559257 LRRC9Q6ZRR7 1453 aa10.18□□□□□ -0.78
USP3-211ENST00000559257 FAM177BA6PVY3 158 aa10.18□□□□□ -0.78
USP3-211ENST00000559257 ERCC3P19447 782 aa10.18□□□□□ -0.78
USP3-211ENST00000559257 INHBEP58166 350 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms