RNA–Protein interactions for RNA: ENST00000558474.1

VPS18-202, Transcript of VPS18, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS18, Length 873 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS18-202ENST00000558474 FYB1O15117 783 aa20.21■□□□□ 0.83
VPS18-202ENST00000558474 CC2D1BQ5T0F9 858 aaKnown RBP20.21■□□□□ 0.83
VPS18-202ENST00000558474 USP54Q70EL1 1684 aa20.21■□□□□ 0.83
VPS18-202ENST00000558474 MYBBP1AQ9BQG0 1328 aaKnown RBP20.21■□□□□ 0.83
VPS18-202ENST00000558474 PSME1Q06323 249 aa20.19■□□□□ 0.82
VPS18-202ENST00000558474 NPHP3Q7Z494 1330 aa20.19■□□□□ 0.82
VPS18-202ENST00000558474 SCAF1Q9H7N4 1312 aaKnown RBP20.18■□□□□ 0.82
VPS18-202ENST00000558474 TRPM3Q9HCF6 1732 aaPredicted RBP20.18■□□□□ 0.82
VPS18-202ENST00000558474 USP31Q70CQ4 1352 aa20.18■□□□□ 0.82
VPS18-202ENST00000558474 BRINP3Q76B58 766 aa20.17■□□□□ 0.82
VPS18-202ENST00000558474 MORC1Q86VD1 984 aa20.17■□□□□ 0.82
VPS18-202ENST00000558474 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.16■□□□□ 0.82
VPS18-202ENST00000558474 NHSL1Q5SYE7 1610 aa20.16■□□□□ 0.82
VPS18-202ENST00000558474 FOXO3O43524 673 aa20.15■□□□□ 0.82
VPS18-202ENST00000558474 NLRP13Q86W25 1043 aa20.15■□□□□ 0.82
VPS18-202ENST00000558474 SBNO1A3KN83 1393 aa20.15■□□□□ 0.82
VPS18-202ENST00000558474 PIK3C2AO00443 1686 aa20.15■□□□□ 0.82
VPS18-202ENST00000558474 OVOS2A0A0J9YW53 1432 aa20.14■□□□□ 0.81
VPS18-202ENST00000558474 OVOS2Q6IE36 1432 aa20.14■□□□□ 0.81
VPS18-202ENST00000558474 TOM1O60784 492 aa20.14■□□□□ 0.81
VPS18-202ENST00000558474 KRT28Q7Z3Y7 464 aa20.14■□□□□ 0.81
VPS18-202ENST00000558474 COG3Q96JB2 828 aa20.14■□□□□ 0.81
VPS18-202ENST00000558474 GGNBP2Q9H3C7 697 aa20.14■□□□□ 0.81
VPS18-202ENST00000558474 PXDNQ92626 1479 aa20.12■□□□□ 0.81
VPS18-202ENST00000558474 NME9Q86XW9 330 aa20.12■□□□□ 0.81
VPS18-202ENST00000558474 ALS2Q96Q42 1657 aa20.12■□□□□ 0.81
VPS18-202ENST00000558474 AATKQ6ZMQ8 1374 aa20.11■□□□□ 0.81
VPS18-202ENST00000558474 ROBO1Q9Y6N7 1651 aa20.11■□□□□ 0.81
VPS18-202ENST00000558474 PPP2R1AP30153 589 aa20.11■□□□□ 0.81
VPS18-202ENST00000558474 AHDC1Q5TGY3 1603 aaPredicted RBP20.09■□□□□ 0.81
VPS18-202ENST00000558474 SOS2Q07890 1332 aaPredicted RBP20.09■□□□□ 0.81
VPS18-202ENST00000558474 CNGB1Q14028 1251 aaPredicted RBP20.09■□□□□ 0.81
VPS18-202ENST00000558474 ABTB2Q8N961 1025 aa20.09■□□□□ 0.81
VPS18-202ENST00000558474 CERKQ8TCT0 537 aa20.09■□□□□ 0.81
VPS18-202ENST00000558474 MARF1Q9Y4F3 1742 aaKnown RBP20.09■□□□□ 0.81
VPS18-202ENST00000558474 PAK3O75914 559 aaPredicted RBP20.08■□□□□ 0.81
VPS18-202ENST00000558474 TNS3Q68CZ2 1445 aa20.07■□□□□ 0.8
VPS18-202ENST00000558474 ARHGEF10O15013 1369 aa20.07■□□□□ 0.8
VPS18-202ENST00000558474 NLRP6P59044 892 aa20.06■□□□□ 0.8
VPS18-202ENST00000558474 MAP2P11137 1827 aaKnown RBP20.05■□□□□ 0.8
VPS18-202ENST00000558474 MRS2Q9HD23 443 aa20.05■□□□□ 0.8
VPS18-202ENST00000558474 SPATA31A3Q5VYP0 1347 aa20.04■□□□□ 0.8
VPS18-202ENST00000558474 SMG6Q86US8 1419 aaKnown RBP20.04■□□□□ 0.8
VPS18-202ENST00000558474 SLIT3O75094 1523 aa20.04■□□□□ 0.8
VPS18-202ENST00000558474 MED1Q15648 1581 aaPredicted RBP20.04■□□□□ 0.8
VPS18-202ENST00000558474 KCNH5Q8NCM2 988 aa20.03■□□□□ 0.8
VPS18-202ENST00000558474 ZRANB1Q9UGI0 708 aa20.03■□□□□ 0.8
VPS18-202ENST00000558474 XPCQ01831 940 aaPredicted RBP20.02■□□□□ 0.8
VPS18-202ENST00000558474 INSRP06213 1382 aa20.02■□□□□ 0.8
VPS18-202ENST00000558474 KIF24Q5T7B8 1368 aa20.02■□□□□ 0.8
VPS18-202ENST00000558474 USP19O94966 1318 aa20.02■□□□□ 0.79
VPS18-202ENST00000558474 UBAP1LF5GYI3 381 aa20.01■□□□□ 0.79
VPS18-202ENST00000558474 CFAP53Q96M91 514 aa20.01■□□□□ 0.79
VPS18-202ENST00000558474 TNNT2P45379 298 aaPredicted RBP20■□□□□ 0.79
VPS18-202ENST00000558474 MTHFSP49914 203 aa20■□□□□ 0.79
VPS18-202ENST00000558474 PNPLA6Q8IY17 1366 aa19.99■□□□□ 0.79
VPS18-202ENST00000558474 PHRF1Q9P1Y6 1649 aaKnown RBP19.99■□□□□ 0.79
VPS18-202ENST00000558474 DDX17Q92841 729 aaKnown RBP19.99■□□□□ 0.79
VPS18-202ENST00000558474 PHLPP1O60346 1717 aa19.99■□□□□ 0.79
VPS18-202ENST00000558474 CRYBG1Q9Y4K1 1723 aa19.99■□□□□ 0.79
VPS18-202ENST00000558474 CDK12Q9NYV4 1490 aaPredicted RBP19.99■□□□□ 0.79
VPS18-202ENST00000558474 NFAT5O94916 1531 aa19.98■□□□□ 0.79
VPS18-202ENST00000558474 CCDC184Q52MB2 194 aa19.98■□□□□ 0.79
VPS18-202ENST00000558474 LRRC59Q96AG4 307 aaKnown RBP19.98■□□□□ 0.79
VPS18-202ENST00000558474 POLKQ9UBT6 870 aa19.98■□□□□ 0.79
VPS18-202ENST00000558474 PNISRQ8TF01 805 aaKnown RBP19.97■□□□□ 0.79
VPS18-202ENST00000558474 RTL1A6NKG5 1358 aa19.95■□□□□ 0.79
VPS18-202ENST00000558474 COL16A1Q07092 1604 aaPredicted RBP19.95■□□□□ 0.78
VPS18-202ENST00000558474 COL22A1Q8NFW1 1626 aaPredicted RBP19.95■□□□□ 0.78
VPS18-202ENST00000558474 LMOD2Q6P5Q4 547 aa19.95■□□□□ 0.78
VPS18-202ENST00000558474 LTN1O94822 1766 aa19.95■□□□□ 0.78
VPS18-202ENST00000558474 GCP02774 474 aa19.94■□□□□ 0.78
VPS18-202ENST00000558474 NUTM2GQ5VZR2 741 aa19.94■□□□□ 0.78
VPS18-202ENST00000558474 COL3A1P02461 1466 aaPredicted RBP19.93■□□□□ 0.78
VPS18-202ENST00000558474 ABCC6O95255 1503 aa19.93■□□□□ 0.78
VPS18-202ENST00000558474 FLT4P35916 1363 aa19.93■□□□□ 0.78
VPS18-202ENST00000558474 SHPRHQ149N8 1683 aa19.92■□□□□ 0.78
VPS18-202ENST00000558474 PIP4K2BP78356 416 aa19.92■□□□□ 0.78
VPS18-202ENST00000558474 ABCA3Q99758 1704 aa19.91■□□□□ 0.78
VPS18-202ENST00000558474 PEAK1Q9H792 1746 aa19.91■□□□□ 0.78
VPS18-202ENST00000558474 RRS1Q15050 365 aaKnown RBP19.91■□□□□ 0.78
VPS18-202ENST00000558474 EMILIN1Q9Y6C2 1016 aa19.91■□□□□ 0.78
VPS18-202ENST00000558474 MAP3K19Q56UN5 1328 aa19.91■□□□□ 0.78
VPS18-202ENST00000558474 NUDCQ9Y266 331 aa19.9■□□□□ 0.78
VPS18-202ENST00000558474 DIAPH1O60610 1272 aaKnown RBP19.89■□□□□ 0.77
VPS18-202ENST00000558474 CPDO75976 1380 aa19.89■□□□□ 0.77
VPS18-202ENST00000558474 WDR43Q15061 677 aaKnown RBP eCLIP19.89■□□□□ 0.77
VPS18-202ENST00000558474 ARHGEF25Q86VW2 580 aa19.89■□□□□ 0.77
VPS18-202ENST00000558474 FBLN1P23142 703 aa19.88■□□□□ 0.77
VPS18-202ENST00000558474 AMPHP49418 695 aa19.88■□□□□ 0.77
VPS18-202ENST00000558474 PPM1GO15355 546 aaPredicted RBP19.87■□□□□ 0.77
VPS18-202ENST00000558474 FAM9BQ8IZU0 186 aa19.87■□□□□ 0.77
VPS18-202ENST00000558474 IP6K1Q92551 441 aa19.87■□□□□ 0.77
VPS18-202ENST00000558474 BLMP54132 1417 aaPredicted RBP19.86■□□□□ 0.77
VPS18-202ENST00000558474 SOX12O15370 315 aa19.85■□□□□ 0.77
VPS18-202ENST00000558474 HOXC9P31274 260 aa19.85■□□□□ 0.77
VPS18-202ENST00000558474 COL18A1P39060 1754 aa19.83■□□□□ 0.77
VPS18-202ENST00000558474 IL13P35225 146 aa19.83■□□□□ 0.77
VPS18-202ENST00000558474 PNNQ9H307 717 aaKnown RBP19.83■□□□□ 0.77
VPS18-202ENST00000558474 RGPD1P0DJD0 1748 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms