RNA–Protein interactions for RNA: ENST00000558319.5

SPG11-210, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SPG11, Length 6,426 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-210ENST00000558319 FSD1Q9BTV5 496 aa16.71■□□□□ 0.27
SPG11-210ENST00000558319 CENPHQ9H3R5 247 aa16.7■□□□□ 0.26
SPG11-210ENST00000558319 AEBP1Q8IUX7 1158 aa16.7■□□□□ 0.26
SPG11-210ENST00000558319 VGFO15240 615 aaPredicted RBP16.7■□□□□ 0.26
SPG11-210ENST00000558319 NLRP6P59044 892 aa16.7■□□□□ 0.26
SPG11-210ENST00000558319 ABTB2Q8N961 1025 aa16.7■□□□□ 0.26
SPG11-210ENST00000558319 C11orf95C9JLR9 678 aaPredicted RBP16.69■□□□□ 0.26
SPG11-210ENST00000558319 USP47Q96K76 1375 aa16.69■□□□□ 0.26
SPG11-210ENST00000558319 KIAA0754O94854 1291 aa16.69■□□□□ 0.26
SPG11-210ENST00000558319 SAFBQ15424 915 aaKnown RBP eCLIP16.68■□□□□ 0.26
SPG11-210ENST00000558319 PRDM2Q13029 1718 aa16.68■□□□□ 0.26
SPG11-210ENST00000558319 UBTFL1P0CB47 393 aaPredicted RBP16.68■□□□□ 0.26
SPG11-210ENST00000558319 LRRFIP1Q32MZ4 808 aaKnown RBP16.68■□□□□ 0.26
SPG11-210ENST00000558319 ZNF644Q9H582 1327 aaPredicted RBP16.67■□□□□ 0.26
SPG11-210ENST00000558319 NEFHP12036 1026 aa16.67■□□□□ 0.26
SPG11-210ENST00000558319 ANKRD62A6NC57 917 aa16.66■□□□□ 0.26
SPG11-210ENST00000558319 FIBPO43427 364 aa16.66■□□□□ 0.26
SPG11-210ENST00000558319 CNNM1Q9NRU3 951 aa16.66■□□□□ 0.26
SPG11-210ENST00000558319 HMGN5P82970 282 aaKnown RBP16.65■□□□□ 0.26
SPG11-210ENST00000558319 TTC39AQ5SRH9 613 aa16.65■□□□□ 0.26
SPG11-210ENST00000558319 MYCNP04198 464 aaPredicted RBP16.65■□□□□ 0.26
SPG11-210ENST00000558319 CBX1P83916 185 aa16.65■□□□□ 0.26
SPG11-210ENST00000558319 GRPEL1Q9HAV7 217 aa16.65■□□□□ 0.26
SPG11-210ENST00000558319 SURF6O75683 361 aaKnown RBP16.64■□□□□ 0.25
SPG11-210ENST00000558319 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.64■□□□□ 0.25
SPG11-210ENST00000558319 SMARCA2P51531 1590 aa16.64■□□□□ 0.25
SPG11-210ENST00000558319 KRT18P05783 430 aaKnown RBP16.64■□□□□ 0.25
SPG11-210ENST00000558319 LETM1O95202 739 aaPredicted RBP16.64■□□□□ 0.25
SPG11-210ENST00000558319 ENOX2Q16206 610 aaKnown RBP16.64■□□□□ 0.25
SPG11-210ENST00000558319 KIF6Q6ZMV9 814 aa16.64■□□□□ 0.25
SPG11-210ENST00000558319 CCDC112Q8NEF3 446 aa16.64■□□□□ 0.25
SPG11-210ENST00000558319 TRERF1Q96PN7 1200 aa16.63■□□□□ 0.25
SPG11-210ENST00000558319 CDCA7LQ96GN5 454 aa16.63■□□□□ 0.25
SPG11-210ENST00000558319 CDC45O75419 566 aa16.63■□□□□ 0.25
SPG11-210ENST00000558319 RBM25P49756 843 aaKnown RBP16.63■□□□□ 0.25
SPG11-210ENST00000558319 TSR2Q969E8 191 aaKnown RBP16.63■□□□□ 0.25
SPG11-210ENST00000558319 CDK5RAP3Q96JB5 506 aa16.63■□□□□ 0.25
SPG11-210ENST00000558319 NUP133Q8WUM0 1156 aa16.63■□□□□ 0.25
SPG11-210ENST00000558319 TAX1BP1Q86VP1 789 aa16.62■□□□□ 0.25
SPG11-210ENST00000558319 MYO6Q9UM54 1294 aa16.62■□□□□ 0.25
SPG11-210ENST00000558319 KINO60870 393 aaKnown RBP16.62■□□□□ 0.25
SPG11-210ENST00000558319 RRP9O43818 475 aaKnown RBP16.62■□□□□ 0.25
SPG11-210ENST00000558319 CCDC18Q5T9S5 1454 aa16.62■□□□□ 0.25
SPG11-210ENST00000558319 SMARCE1Q969G3 411 aa16.62■□□□□ 0.25
SPG11-210ENST00000558319 TXNDC2Q86VQ3 553 aa16.61■□□□□ 0.25
SPG11-210ENST00000558319 RUNDC1Q96C34 613 aa16.61■□□□□ 0.25
SPG11-210ENST00000558319 ZNF219Q9P2Y4 722 aaPredicted RBP16.61■□□□□ 0.25
SPG11-210ENST00000558319 SERPINC1P01008 464 aa16.61■□□□□ 0.25
SPG11-210ENST00000558319 NEK4P51957 841 aa16.61■□□□□ 0.25
SPG11-210ENST00000558319 DCAF8L1A6NGE4 600 aa16.61■□□□□ 0.25
SPG11-210ENST00000558319 GOLGA6L10A6NI86 522 aa16.61■□□□□ 0.25
SPG11-210ENST00000558319 ERC2O15083 957 aa16.61■□□□□ 0.25
SPG11-210ENST00000558319 BRMS1Q9HCU9 246 aa16.61■□□□□ 0.25
SPG11-210ENST00000558319 DEF6Q9H4E7 631 aa16.6■□□□□ 0.25
SPG11-210ENST00000558319 BAZ1AQ9NRL2 1556 aaPredicted RBP16.6■□□□□ 0.25
SPG11-210ENST00000558319 API5Q9BZZ5 524 aaKnown RBP16.6■□□□□ 0.25
SPG11-210ENST00000558319 TAF3Q5VWG9 929 aa16.6■□□□□ 0.25
SPG11-210ENST00000558319 PDS5BQ9NTI5 1447 aa16.59■□□□□ 0.25
SPG11-210ENST00000558319 MATR3P43243 847 aaKnown RBP eCLIP16.59■□□□□ 0.25
SPG11-210ENST00000558319 SEPT11Q9NVA2 429 aaKnown RBP16.59■□□□□ 0.25
SPG11-210ENST00000558319 FILIP1LQ4L180 1135 aa16.59■□□□□ 0.25
SPG11-210ENST00000558319 CCP110O43303 1012 aa16.59■□□□□ 0.25
SPG11-210ENST00000558319 ZSCAN29Q8IWY8 852 aaPredicted RBP16.59■□□□□ 0.25
SPG11-210ENST00000558319 CCDC102AQ96A19 550 aa16.59■□□□□ 0.25
SPG11-210ENST00000558319 MBD3O95983 291 aa16.58■□□□□ 0.25
SPG11-210ENST00000558319 FKBP4Q02790 459 aaKnown RBP eCLIP16.58■□□□□ 0.25
SPG11-210ENST00000558319 MTHFSP49914 203 aa16.58■□□□□ 0.24
SPG11-210ENST00000558319 MAGEC2Q9UBF1 373 aaPredicted RBP16.58■□□□□ 0.24
SPG11-210ENST00000558319 CNTROBQ8N137 903 aa16.58■□□□□ 0.24
SPG11-210ENST00000558319 TOM1L2Q6ZVM7 507 aa16.57■□□□□ 0.24
SPG11-210ENST00000558319 TANGO6Q9C0B7 1094 aa16.57■□□□□ 0.24
SPG11-210ENST00000558319 WIZO95785 1651 aa16.57■□□□□ 0.24
SPG11-210ENST00000558319 RAPGEF2Q9Y4G8 1499 aa16.57■□□□□ 0.24
SPG11-210ENST00000558319 SEPT7Q16181 437 aaKnown RBP16.57■□□□□ 0.24
SPG11-210ENST00000558319 CCDC181Q5TID7 509 aa16.57■□□□□ 0.24
SPG11-210ENST00000558319 DYDC1Q8WWB3 177 aa16.57■□□□□ 0.24
SPG11-210ENST00000558319 SLC4A8Q2Y0W8 1093 aa16.57■□□□□ 0.24
SPG11-210ENST00000558319 GPATCH11Q8N954 259 aa16.57■□□□□ 0.24
SPG11-210ENST00000558319 TRMT1LQ7Z2T5 733 aaKnown RBP16.57■□□□□ 0.24
SPG11-210ENST00000558319 ADAMTS8Q9UP79 889 aa16.57■□□□□ 0.24
SPG11-210ENST00000558319 ECM2O94769 699 aaPredicted RBP16.56■□□□□ 0.24
SPG11-210ENST00000558319 TICAM2Q86XR7 235 aa16.56■□□□□ 0.24
SPG11-210ENST00000558319 MIS18AQ9NYP9 233 aa16.56■□□□□ 0.24
SPG11-210ENST00000558319 TBC1D2BQ9UPU7 963 aa16.56■□□□□ 0.24
SPG11-210ENST00000558319 MROH2BQ7Z745 1585 aa16.56■□□□□ 0.24
SPG11-210ENST00000558319 NOB1Q9ULX3 412 aaKnown RBP16.56■□□□□ 0.24
SPG11-210ENST00000558319 SSBP05455 408 aaKnown RBP eCLIP16.56■□□□□ 0.24
SPG11-210ENST00000558319 PDCL2Q8N4E4 241 aa16.56■□□□□ 0.24
SPG11-210ENST00000558319 SF3B2Q13435 895 aaKnown RBP16.56■□□□□ 0.24
SPG11-210ENST00000558319 WWC2Q6AWC2 1192 aa16.56■□□□□ 0.24
SPG11-210ENST00000558319 PROSER2Q86WR7 435 aaPredicted RBP16.55■□□□□ 0.24
SPG11-210ENST00000558319 TNMDQ9H2S6 317 aa16.55■□□□□ 0.24
SPG11-210ENST00000558319 PPM1FP49593 454 aaPredicted RBP16.55■□□□□ 0.24
SPG11-210ENST00000558319 GIMAP7Q8NHV1 300 aa16.55■□□□□ 0.24
SPG11-210ENST00000558319 ROCK1Q13464 1354 aa16.55■□□□□ 0.24
SPG11-210ENST00000558319 GOLGA6L7A0A1B0GV03 622 aa16.55■□□□□ 0.24
SPG11-210ENST00000558319 PRKAR2BP31323 418 aa16.55■□□□□ 0.24
SPG11-210ENST00000558319 CABP4P57796 275 aa16.55■□□□□ 0.24
SPG11-210ENST00000558319 PDZRN3Q9UPQ7 1066 aa16.55■□□□□ 0.24
SPG11-210ENST00000558319 ESPNB1AK53 854 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 166.9 ms