RNA–Protein interactions for RNA: ENST00000558314.5

TPM1-211, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,031 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-211ENST00000558314 FAM98CQ17RN3 349 aaKnown RBP22.4■■□□□ 1.18
TPM1-211ENST00000558314 SIN3AQ96ST3 1273 aa22.4■■□□□ 1.18
TPM1-211ENST00000558314 ALS2Q96Q42 1657 aa22.39■■□□□ 1.17
TPM1-211ENST00000558314 ACEP12821 1306 aa22.38■■□□□ 1.17
TPM1-211ENST00000558314 ITSN1Q15811 1721 aa22.38■■□□□ 1.17
TPM1-211ENST00000558314 SF3B2Q13435 895 aaKnown RBP22.38■■□□□ 1.17
TPM1-211ENST00000558314 CCDC125Q86Z20 511 aa22.38■■□□□ 1.17
TPM1-211ENST00000558314 L3MBTL2Q969R5 705 aa22.38■■□□□ 1.17
TPM1-211ENST00000558314 NWD2Q9ULI1 1742 aa22.37■■□□□ 1.17
TPM1-211ENST00000558314 CENPJQ9HC77 1338 aaPredicted RBP22.37■■□□□ 1.17
TPM1-211ENST00000558314 ZC3H6P61129 1189 aaKnown RBP22.37■■□□□ 1.17
TPM1-211ENST00000558314 CHRNA2Q15822 529 aa22.37■■□□□ 1.17
TPM1-211ENST00000558314 KRT27Q7Z3Y8 459 aa22.37■■□□□ 1.17
TPM1-211ENST00000558314 CABP2Q9NPB3 220 aa22.37■■□□□ 1.17
TPM1-211ENST00000558314 ZRANB1Q9UGI0 708 aa22.37■■□□□ 1.17
TPM1-211ENST00000558314 CCDC61Q9Y6R9 512 aa22.37■■□□□ 1.17
TPM1-211ENST00000558314 NBPF8Q3BBV2 869 aa22.36■■□□□ 1.17
TPM1-211ENST00000558314 KIAA1210Q9ULL0 1709 aa22.36■■□□□ 1.17
TPM1-211ENST00000558314 STRN4Q9NRL3 753 aa22.35■■□□□ 1.17
TPM1-211ENST00000558314 BRWD3Q6RI45 1802 aa22.35■■□□□ 1.17
TPM1-211ENST00000558314 COL14A1Q05707 1796 aaKnown RBP22.33■■□□□ 1.17
TPM1-211ENST00000558314 DEFB132Q7Z7B7 95 aa22.33■■□□□ 1.17
TPM1-211ENST00000558314 ABTB2Q8N961 1025 aa22.33■■□□□ 1.17
TPM1-211ENST00000558314 KIAA0232Q92628 1395 aa22.33■■□□□ 1.17
TPM1-211ENST00000558314 BLMP54132 1417 aaPredicted RBP22.32■■□□□ 1.16
TPM1-211ENST00000558314 ZBTB7CA1YPR0 619 aa22.31■■□□□ 1.16
TPM1-211ENST00000558314 PPIP5K1Q6PFW1 1433 aa22.31■■□□□ 1.16
TPM1-211ENST00000558314 POLR3AO14802 1390 aaPredicted RBP22.3■■□□□ 1.16
TPM1-211ENST00000558314 PLEKHG3A1L390 1219 aa22.3■■□□□ 1.16
TPM1-211ENST00000558314 ONECUT3O60422 494 aaPredicted RBP22.3■■□□□ 1.16
TPM1-211ENST00000558314 FAM182BQ5T319 152 aa22.3■■□□□ 1.16
TPM1-211ENST00000558314 NRAPQ86VF7 1730 aa22.3■■□□□ 1.16
TPM1-211ENST00000558314 USP35Q9P2H5 1018 aa22.29■■□□□ 1.16
TPM1-211ENST00000558314 EP400Q96L91 3159 aa22.28■■□□□ 1.16
TPM1-211ENST00000558314 TOPAZ1Q8N9V7 1692 aa22.28■■□□□ 1.16
TPM1-211ENST00000558314 EVA1CP58658 441 aa22.28■■□□□ 1.16
TPM1-211ENST00000558314 SPATA31A5Q5VU36 1347 aa22.28■■□□□ 1.16
TPM1-211ENST00000558314 SPATA31A7Q8IWB4 1347 aa22.28■■□□□ 1.16
TPM1-211ENST00000558314 CABP1Q9NZU7 370 aa22.27■■□□□ 1.16
TPM1-211ENST00000558314 CRYBG1Q9Y4K1 1723 aa22.26■■□□□ 1.15
TPM1-211ENST00000558314 QRICH2Q9H0J4 1663 aa22.26■■□□□ 1.15
TPM1-211ENST00000558314 ROCK2O75116 1388 aaKnown RBP22.25■■□□□ 1.15
TPM1-211ENST00000558314 PHRF1Q9P1Y6 1649 aaKnown RBP22.24■■□□□ 1.15
TPM1-211ENST00000558314 NLRP13Q86W25 1043 aa22.23■■□□□ 1.15
TPM1-211ENST00000558314 EVC2Q86UK5 1308 aa22.23■■□□□ 1.15
TPM1-211ENST00000558314 BAG6P46379 1132 aa22.21■■□□□ 1.15
TPM1-211ENST00000558314 SPATA31A1Q5TZJ5 1347 aa22.21■■□□□ 1.15
TPM1-211ENST00000558314 NLRP6P59044 892 aa22.2■■□□□ 1.14
TPM1-211ENST00000558314 GCP02774 474 aa22.19■■□□□ 1.14
TPM1-211ENST00000558314 LARP1Q6PKG0 1096 aaKnown RBP22.19■■□□□ 1.14
TPM1-211ENST00000558314 TRPM1Q7Z4N2 1603 aa22.19■■□□□ 1.14
TPM1-211ENST00000558314 NRKQ7Z2Y5 1582 aa22.18■■□□□ 1.14
TPM1-211ENST00000558314 USP19O94966 1318 aa22.17■■□□□ 1.14
TPM1-211ENST00000558314 SOX12O15370 315 aa22.17■■□□□ 1.14
TPM1-211ENST00000558314 SSH2Q76I76 1423 aa22.16■■□□□ 1.14
TPM1-211ENST00000558314 EN1Q05925 392 aaPredicted RBP22.16■■□□□ 1.14
TPM1-211ENST00000558314 USP6P35125 1406 aa22.15■■□□□ 1.14
TPM1-211ENST00000558314 PSDA5PKW4 1024 aaPredicted RBP22.15■■□□□ 1.14
TPM1-211ENST00000558314 PDE3BQ13370 1112 aa22.14■■□□□ 1.13
TPM1-211ENST00000558314 CAMTA1Q9Y6Y1 1673 aa22.14■■□□□ 1.13
TPM1-211ENST00000558314 TRIM37O94972 964 aa22.13■■□□□ 1.13
TPM1-211ENST00000558314 CARD11Q9BXL7 1154 aa22.13■■□□□ 1.13
TPM1-211ENST00000558314 THSD7AQ9UPZ6 1657 aa22.13■■□□□ 1.13
TPM1-211ENST00000558314 CPDO75976 1380 aa22.12■■□□□ 1.13
TPM1-211ENST00000558314 TCP11L2Q8N4U5 519 aa22.12■■□□□ 1.13
TPM1-211ENST00000558314 TONSLQ96HA7 1378 aa22.12■■□□□ 1.13
TPM1-211ENST00000558314 BRD4O60885 1362 aaPredicted RBP22.11■■□□□ 1.13
TPM1-211ENST00000558314 FAM196AQ6ZSG2 479 aa22.1■■□□□ 1.13
TPM1-211ENST00000558314 BARGINQ6ZT62 677 aa22.09■■□□□ 1.13
TPM1-211ENST00000558314 TTC21BQ7Z4L5 1316 aa22.08■■□□□ 1.13
TPM1-211ENST00000558314 TMC1Q8TDI8 760 aa22.08■■□□□ 1.13
TPM1-211ENST00000558314 RGPD1P0DJD0 1748 aa22.07■■□□□ 1.12
TPM1-211ENST00000558314 APBA3O96018 575 aa22.07■■□□□ 1.12
TPM1-211ENST00000558314 EZH2Q15910 746 aaKnown RBP22.07■■□□□ 1.12
TPM1-211ENST00000558314 TOM1L2Q6ZVM7 507 aa22.07■■□□□ 1.12
TPM1-211ENST00000558314 ZNF692Q9BU19 519 aaPredicted RBP22.07■■□□□ 1.12
TPM1-211ENST00000558314 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.06■■□□□ 1.12
TPM1-211ENST00000558314 KTN1Q86UP2 1357 aaKnown RBP22.06■■□□□ 1.12
TPM1-211ENST00000558314 COL5A2P05997 1499 aaPredicted RBP22.06■■□□□ 1.12
TPM1-211ENST00000558314 LMO7Q8WWI1 1683 aa22.06■■□□□ 1.12
TPM1-211ENST00000558314 CSB-PGBD3P0DP91 1061 aa22.05■■□□□ 1.12
TPM1-211ENST00000558314 R3HDM1Q15032 1099 aaKnown RBP22.04■■□□□ 1.12
TPM1-211ENST00000558314 SRCAPQ6ZRS2 3230 aa22.04■■□□□ 1.12
TPM1-211ENST00000558314 PIK3C2AO00443 1686 aa22.04■■□□□ 1.12
TPM1-211ENST00000558314 THRAP3Q9Y2W1 955 aaKnown RBP22.03■■□□□ 1.12
TPM1-211ENST00000558314 CRB1P82279 1406 aa22.03■■□□□ 1.12
TPM1-211ENST00000558314 AATKQ6ZMQ8 1374 aa22.02■■□□□ 1.12
TPM1-211ENST00000558314 SLIT3O75094 1523 aa22.02■■□□□ 1.12
TPM1-211ENST00000558314 KCNH5Q8NCM2 988 aa22.01■■□□□ 1.11
TPM1-211ENST00000558314 AXIN2Q9Y2T1 843 aa22.01■■□□□ 1.11
TPM1-211ENST00000558314 TTC21AQ8NDW8 1320 aa22.01■■□□□ 1.11
TPM1-211ENST00000558314 TNS1Q9HBL0 1735 aaKnown RBP22■■□□□ 1.11
TPM1-211ENST00000558314 CPSF1Q10570 1443 aaKnown RBP21.98■■□□□ 1.11
TPM1-211ENST00000558314 AKAP12Q02952 1782 aa21.98■■□□□ 1.11
TPM1-211ENST00000558314 HDGFL2Q7Z4V5 671 aaPredicted RBP21.98■■□□□ 1.11
TPM1-211ENST00000558314 ARHGEF25Q86VW2 580 aa21.98■■□□□ 1.11
TPM1-211ENST00000558314 CAMKK2Q96RR4 588 aa21.98■■□□□ 1.11
TPM1-211ENST00000558314 TRIM26Q12899 539 aaPredicted RBP21.97■■□□□ 1.11
TPM1-211ENST00000558314 DDB1Q16531 1140 aa21.97■■□□□ 1.11
TPM1-211ENST00000558314 NME9Q86XW9 330 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms