RNA–Protein interactions for RNA: ENST00000557845.1

NEDD4-212, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 2

Gene NEDD4, Length 374 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-212ENST00000557845 UNC5CLQ8IV45 518 aa23.85■■□□□ 1.41
NEDD4-212ENST00000557845 RGS12O14924 1447 aa23.84■■□□□ 1.41
NEDD4-212ENST00000557845 FAM83GA6ND36 823 aa23.83■■□□□ 1.41
NEDD4-212ENST00000557845 GJD4Q96KN9 370 aaPredicted RBP23.83■■□□□ 1.41
NEDD4-212ENST00000557845 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.83■■□□□ 1.41
NEDD4-212ENST00000557845 PPIP5K1Q6PFW1 1433 aa23.82■■□□□ 1.4
NEDD4-212ENST00000557845 EVC2Q86UK5 1308 aa23.82■■□□□ 1.4
NEDD4-212ENST00000557845 UPF1Q92900 1129 aaKnown RBP eCLIP23.81■■□□□ 1.4
NEDD4-212ENST00000557845 CARD11Q9BXL7 1154 aa23.8■■□□□ 1.4
NEDD4-212ENST00000557845 CABP1Q9NZU7 370 aa23.79■■□□□ 1.4
NEDD4-212ENST00000557845 PLCH1Q4KWH8 1693 aa23.78■■□□□ 1.4
NEDD4-212ENST00000557845 NWD2Q9ULI1 1742 aa23.78■■□□□ 1.4
NEDD4-212ENST00000557845 CRYBG1Q9Y4K1 1723 aa23.77■■□□□ 1.4
NEDD4-212ENST00000557845 NUTM2GQ5VZR2 741 aa23.76■■□□□ 1.39
NEDD4-212ENST00000557845 RALGAPBQ86X10 1494 aa23.75■■□□□ 1.39
NEDD4-212ENST00000557845 VPS72Q15906 364 aa23.75■■□□□ 1.39
NEDD4-212ENST00000557845 ABTB2Q8N961 1025 aa23.75■■□□□ 1.39
NEDD4-212ENST00000557845 BTG4Q9NY30 223 aa23.73■■□□□ 1.39
NEDD4-212ENST00000557845 GLI3P10071 1580 aa23.73■■□□□ 1.39
NEDD4-212ENST00000557845 COL14A1Q05707 1796 aaKnown RBP23.73■■□□□ 1.39
NEDD4-212ENST00000557845 BRD4O60885 1362 aaPredicted RBP23.71■■□□□ 1.39
NEDD4-212ENST00000557845 CCDC9Q9Y3X0 531 aaKnown RBP23.71■■□□□ 1.39
NEDD4-212ENST00000557845 SBNO2Q9Y2G9 1366 aa23.7■■□□□ 1.38
NEDD4-212ENST00000557845 PCGF6Q9BYE7 350 aa23.7■■□□□ 1.38
NEDD4-212ENST00000557845 PRDM11Q9NQV5 511 aa23.7■■□□□ 1.38
NEDD4-212ENST00000557845 PHRF1Q9P1Y6 1649 aaKnown RBP23.7■■□□□ 1.38
NEDD4-212ENST00000557845 NLRP13Q86W25 1043 aa23.69■■□□□ 1.38
NEDD4-212ENST00000557845 USP6P35125 1406 aa23.68■■□□□ 1.38
NEDD4-212ENST00000557845 NRAPQ86VF7 1730 aa23.68■■□□□ 1.38
NEDD4-212ENST00000557845 ZC3H6P61129 1189 aaKnown RBP23.68■■□□□ 1.38
NEDD4-212ENST00000557845 ZNF692Q9BU19 519 aaPredicted RBP23.68■■□□□ 1.38
NEDD4-212ENST00000557845 ATAD2Q6PL18 1390 aa23.67■■□□□ 1.38
NEDD4-212ENST00000557845 KIAA0232Q92628 1395 aa23.67■■□□□ 1.38
NEDD4-212ENST00000557845 ONECUT3O60422 494 aaPredicted RBP23.67■■□□□ 1.38
NEDD4-212ENST00000557845 CHRNA2Q15822 529 aa23.66■■□□□ 1.38
NEDD4-212ENST00000557845 SSH2Q76I76 1423 aa23.65■■□□□ 1.38
NEDD4-212ENST00000557845 USP19O94966 1318 aa23.64■■□□□ 1.38
NEDD4-212ENST00000557845 SEPT12Q8IYM1 358 aa23.64■■□□□ 1.37
NEDD4-212ENST00000557845 GCP02774 474 aa23.63■■□□□ 1.37
NEDD4-212ENST00000557845 NLRP6P59044 892 aa23.63■■□□□ 1.37
NEDD4-212ENST00000557845 AKAP12Q02952 1782 aa23.63■■□□□ 1.37
NEDD4-212ENST00000557845 BRWD3Q6RI45 1802 aa23.62■■□□□ 1.37
NEDD4-212ENST00000557845 CLSPNQ9HAW4 1339 aa23.61■■□□□ 1.37
NEDD4-212ENST00000557845 NRKQ7Z2Y5 1582 aa23.61■■□□□ 1.37
NEDD4-212ENST00000557845 TIMELESSQ9UNS1 1208 aa23.61■■□□□ 1.37
NEDD4-212ENST00000557845 CPSF1Q10570 1443 aaKnown RBP23.6■■□□□ 1.37
NEDD4-212ENST00000557845 ST20-MTHFSA0A0A6YYL1 179 aa23.6■■□□□ 1.37
NEDD4-212ENST00000557845 SPATA31A5Q5VU36 1347 aa23.59■■□□□ 1.37
NEDD4-212ENST00000557845 TTC21BQ7Z4L5 1316 aa23.59■■□□□ 1.37
NEDD4-212ENST00000557845 SPATA31A7Q8IWB4 1347 aa23.59■■□□□ 1.37
NEDD4-212ENST00000557845 CPDO75976 1380 aa23.59■■□□□ 1.37
NEDD4-212ENST00000557845 FAM98CQ17RN3 349 aaKnown RBP23.58■■□□□ 1.37
NEDD4-212ENST00000557845 PUS7Q96PZ0 661 aaKnown RBP23.58■■□□□ 1.37
NEDD4-212ENST00000557845 TESK2Q96S53 571 aa23.58■■□□□ 1.37
NEDD4-212ENST00000557845 STRN4Q9NRL3 753 aa23.58■■□□□ 1.37
NEDD4-212ENST00000557845 KTN1Q86UP2 1357 aaKnown RBP23.57■■□□□ 1.36
NEDD4-212ENST00000557845 EVA1CP58658 441 aa23.57■■□□□ 1.36
NEDD4-212ENST00000557845 TMC1Q8TDI8 760 aa23.57■■□□□ 1.36
NEDD4-212ENST00000557845 PIK3C2AO00443 1686 aa23.57■■□□□ 1.36
NEDD4-212ENST00000557845 SLC24A1O60721 1099 aa23.56■■□□□ 1.36
NEDD4-212ENST00000557845 CCDC125Q86Z20 511 aa23.56■■□□□ 1.36
NEDD4-212ENST00000557845 SLC12A5Q9H2X9 1139 aa23.56■■□□□ 1.36
NEDD4-212ENST00000557845 TTC21AQ8NDW8 1320 aa23.56■■□□□ 1.36
NEDD4-212ENST00000557845 A0A0G2JS52 829 aa23.55■■□□□ 1.36
NEDD4-212ENST00000557845 MYT1Q01538 1121 aa23.55■■□□□ 1.36
NEDD4-212ENST00000557845 KRT27Q7Z3Y8 459 aa23.55■■□□□ 1.36
NEDD4-212ENST00000557845 SPATA31A1Q5TZJ5 1347 aa23.55■■□□□ 1.36
NEDD4-212ENST00000557845 CAMTA1Q9Y6Y1 1673 aa23.54■■□□□ 1.36
NEDD4-212ENST00000557845 SLIT3O75094 1523 aa23.54■■□□□ 1.36
NEDD4-212ENST00000557845 MON2Q7Z3U7 1717 aa23.53■■□□□ 1.36
NEDD4-212ENST00000557845 LMO7Q8WWI1 1683 aa23.53■■□□□ 1.36
NEDD4-212ENST00000557845 CD163L1Q9NR16 1453 aa23.52■■□□□ 1.36
NEDD4-212ENST00000557845 HDGFL2Q7Z4V5 671 aaPredicted RBP23.52■■□□□ 1.36
NEDD4-212ENST00000557845 EP400Q96L91 3159 aa23.5■■□□□ 1.35
NEDD4-212ENST00000557845 ZBTB7CA1YPR0 619 aa23.5■■□□□ 1.35
NEDD4-212ENST00000557845 LARP1Q6PKG0 1096 aaKnown RBP23.5■■□□□ 1.35
NEDD4-212ENST00000557845 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.5■■□□□ 1.35
NEDD4-212ENST00000557845 KCNH5Q8NCM2 988 aa23.5■■□□□ 1.35
NEDD4-212ENST00000557845 TERF2IPQ9NYB0 399 aa23.49■■□□□ 1.35
NEDD4-212ENST00000557845 USP35Q9P2H5 1018 aa23.49■■□□□ 1.35
NEDD4-212ENST00000557845 USP47Q96K76 1375 aa23.49■■□□□ 1.35
NEDD4-212ENST00000557845 CCER1Q8TC90 406 aaPredicted RBP23.48■■□□□ 1.35
NEDD4-212ENST00000557845 AATKQ6ZMQ8 1374 aa23.48■■□□□ 1.35
NEDD4-212ENST00000557845 ZRANB1Q9UGI0 708 aa23.47■■□□□ 1.35
NEDD4-212ENST00000557845 THSD7AQ9UPZ6 1657 aa23.47■■□□□ 1.35
NEDD4-212ENST00000557845 BARGINQ6ZT62 677 aa23.46■■□□□ 1.35
NEDD4-212ENST00000557845 ARHGEF25Q86VW2 580 aa23.46■■□□□ 1.35
NEDD4-212ENST00000557845 COL18A1P39060 1754 aa23.45■■□□□ 1.34
NEDD4-212ENST00000557845 COL5A2P05997 1499 aaPredicted RBP23.45■■□□□ 1.34
NEDD4-212ENST00000557845 BLMP54132 1417 aaPredicted RBP23.45■■□□□ 1.34
NEDD4-212ENST00000557845 USP31Q70CQ4 1352 aa23.45■■□□□ 1.34
NEDD4-212ENST00000557845 SOX12O15370 315 aa23.45■■□□□ 1.34
NEDD4-212ENST00000557845 TMF1P82094 1093 aa23.45■■□□□ 1.34
NEDD4-212ENST00000557845 NME9Q86XW9 330 aa23.45■■□□□ 1.34
NEDD4-212ENST00000557845 A0A1W2PP64 1363 aa23.44■■□□□ 1.34
NEDD4-212ENST00000557845 TCP11L2Q8N4U5 519 aa23.44■■□□□ 1.34
NEDD4-212ENST00000557845 AXIN2Q9Y2T1 843 aa23.44■■□□□ 1.34
NEDD4-212ENST00000557845 EDC4Q6P2E9 1401 aaKnown RBP23.43■■□□□ 1.34
NEDD4-212ENST00000557845 NINLQ9Y2I6 1382 aa23.43■■□□□ 1.34
NEDD4-212ENST00000557845 THRAP3Q9Y2W1 955 aaKnown RBP23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms