RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ZNF428Q96B54 188 aa20.53■□□□□ 0.88
SHMT2-231ENST00000557433 ANKRD26Q9UPS8 1709 aa20.53■□□□□ 0.88
SHMT2-231ENST00000557433 NEXMIFQ5QGS0 1516 aa20.53■□□□□ 0.88
SHMT2-231ENST00000557433 CHMP4BQ9H444 224 aaKnown RBP20.53■□□□□ 0.88
SHMT2-231ENST00000557433 ATAD2Q6PL18 1390 aa20.52■□□□□ 0.88
SHMT2-231ENST00000557433 DDX11L8A8MPP1 907 aa20.52■□□□□ 0.88
SHMT2-231ENST00000557433 PRKCSHP14314 528 aaPredicted RBP20.52■□□□□ 0.88
SHMT2-231ENST00000557433 TMEM132EQ6IEE7 984 aa20.52■□□□□ 0.88
SHMT2-231ENST00000557433 HSCBQ8IWL3 235 aa20.52■□□□□ 0.88
SHMT2-231ENST00000557433 EXOSC9Q06265 439 aaKnown RBP20.51■□□□□ 0.87
SHMT2-231ENST00000557433 ALDH1L2Q3SY69 923 aa20.51■□□□□ 0.87
SHMT2-231ENST00000557433 CD109Q6YHK3 1445 aa20.51■□□□□ 0.87
SHMT2-231ENST00000557433 SNX21Q969T3 373 aa20.51■□□□□ 0.87
SHMT2-231ENST00000557433 BRPF1P55201 1214 aaPredicted RBP20.5■□□□□ 0.87
SHMT2-231ENST00000557433 SSH1Q8WYL5 1049 aa20.5■□□□□ 0.87
SHMT2-231ENST00000557433 NCOA3Q9Y6Q9 1424 aa20.5■□□□□ 0.87
SHMT2-231ENST00000557433 RBM25P49756 843 aaKnown RBP20.49■□□□□ 0.87
SHMT2-231ENST00000557433 ARHGAP31Q2M1Z3 1444 aa20.49■□□□□ 0.87
SHMT2-231ENST00000557433 ITPRIPQ8IWB1 547 aa20.49■□□□□ 0.87
SHMT2-231ENST00000557433 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.49■□□□□ 0.87
SHMT2-231ENST00000557433 TRIM35Q9UPQ4 493 aa20.49■□□□□ 0.87
SHMT2-231ENST00000557433 ZBTB40Q9NUA8 1239 aa20.49■□□□□ 0.87
SHMT2-231ENST00000557433 CIZ1Q9ULV3 898 aaPredicted RBP20.49■□□□□ 0.87
SHMT2-231ENST00000557433 PTMSP20962 102 aa20.48■□□□□ 0.87
SHMT2-231ENST00000557433 MFAP1P55081 439 aaKnown RBP20.48■□□□□ 0.87
SHMT2-231ENST00000557433 TERF2IPQ9NYB0 399 aa20.48■□□□□ 0.87
SHMT2-231ENST00000557433 A0A1W2PP64 1363 aa20.48■□□□□ 0.87
SHMT2-231ENST00000557433 EIF5BO60841 1220 aaKnown RBP20.47■□□□□ 0.87
SHMT2-231ENST00000557433 TSR2Q969E8 191 aaKnown RBP20.47■□□□□ 0.87
SHMT2-231ENST00000557433 CDC42BPGQ6DT37 1551 aa20.47■□□□□ 0.87
SHMT2-231ENST00000557433 CLTCQ00610 1675 aaKnown RBP20.46■□□□□ 0.87
SHMT2-231ENST00000557433 PNPLA6Q8IY17 1366 aa20.46■□□□□ 0.87
SHMT2-231ENST00000557433 NUCB1Q02818 461 aa20.46■□□□□ 0.87
SHMT2-231ENST00000557433 MRE11P49959 708 aa20.45■□□□□ 0.86
SHMT2-231ENST00000557433 NOB1Q9ULX3 412 aaKnown RBP20.45■□□□□ 0.86
SHMT2-231ENST00000557433 PPIP5K1Q6PFW1 1433 aa20.45■□□□□ 0.86
SHMT2-231ENST00000557433 U2SURPO15042 1029 aaKnown RBP20.45■□□□□ 0.86
SHMT2-231ENST00000557433 TRAK2O60296 914 aa20.45■□□□□ 0.86
SHMT2-231ENST00000557433 REREQ9P2R6 1566 aa20.44■□□□□ 0.86
SHMT2-231ENST00000557433 XRCC6P12956 609 aaKnown RBP eCLIP20.43■□□□□ 0.86
SHMT2-231ENST00000557433 GGT6Q6P531 493 aa20.43■□□□□ 0.86
SHMT2-231ENST00000557433 CABP2Q9NPB3 220 aa20.43■□□□□ 0.86
SHMT2-231ENST00000557433 DDIT3P35638 169 aa20.43■□□□□ 0.86
SHMT2-231ENST00000557433 TMEM57Q8N5G2 664 aa20.43■□□□□ 0.86
SHMT2-231ENST00000557433 DIAPH1O60610 1272 aaKnown RBP20.42■□□□□ 0.86
SHMT2-231ENST00000557433 BMP2KLQ5H9B9 411 aa20.42■□□□□ 0.86
SHMT2-231ENST00000557433 ZNF692Q9BU19 519 aaPredicted RBP20.42■□□□□ 0.86
SHMT2-231ENST00000557433 SIGLEC1Q9BZZ2 1709 aa20.41■□□□□ 0.86
SHMT2-231ENST00000557433 FCHSD2O94868 740 aa20.41■□□□□ 0.86
SHMT2-231ENST00000557433 RIPK4P57078 832 aa20.41■□□□□ 0.86
SHMT2-231ENST00000557433 ARHGAP45Q92619 1136 aa20.41■□□□□ 0.86
SHMT2-231ENST00000557433 GCC1Q96CN9 775 aa20.41■□□□□ 0.86
SHMT2-231ENST00000557433 SLC52A1Q9NWF4 448 aa20.41■□□□□ 0.86
SHMT2-231ENST00000557433 CALD1Q05682 793 aaKnown RBP20.41■□□□□ 0.86
SHMT2-231ENST00000557433 CHD1LQ86WJ1 897 aa20.4■□□□□ 0.86
SHMT2-231ENST00000557433 FYB1O15117 783 aa20.39■□□□□ 0.86
SHMT2-231ENST00000557433 SRPK2P78362 688 aaKnown RBP20.39■□□□□ 0.86
SHMT2-231ENST00000557433 SKOR2Q2VWA4 1001 aaPredicted RBP20.39■□□□□ 0.86
SHMT2-231ENST00000557433 CFAP44Q96MT7 982 aa20.39■□□□□ 0.86
SHMT2-231ENST00000557433 PIK3R4Q99570 1358 aa20.39■□□□□ 0.85
SHMT2-231ENST00000557433 PTPRMP28827 1452 aa20.39■□□□□ 0.85
SHMT2-231ENST00000557433 GBP4Q96PP9 640 aa20.39■□□□□ 0.85
SHMT2-231ENST00000557433 RRAGDQ9NQL2 400 aaPredicted RBP20.39■□□□□ 0.85
SHMT2-231ENST00000557433 CFAP65Q6ZU64 1925 aaKnown RBP20.39■□□□□ 0.85
SHMT2-231ENST00000557433 HDGFL2Q7Z4V5 671 aaPredicted RBP20.38■□□□□ 0.85
SHMT2-231ENST00000557433 CD163L1Q9NR16 1453 aa20.38■□□□□ 0.85
SHMT2-231ENST00000557433 CLCN1P35523 988 aa20.37■□□□□ 0.85
SHMT2-231ENST00000557433 GGNBP2Q9H3C7 697 aa20.37■□□□□ 0.85
SHMT2-231ENST00000557433 NEO1Q92859 1461 aa20.37■□□□□ 0.85
SHMT2-231ENST00000557433 NPM1P06748 294 aaKnown RBP eCLIP20.37■□□□□ 0.85
SHMT2-231ENST00000557433 OSCARQ8IYS5 282 aa20.36■□□□□ 0.85
SHMT2-231ENST00000557433 PTCH1Q13635 1447 aa20.36■□□□□ 0.85
SHMT2-231ENST00000557433 SPRYD3Q8NCJ5 442 aa20.35■□□□□ 0.85
SHMT2-231ENST00000557433 FAM135BQ49AJ0 1406 aa20.35■□□□□ 0.85
SHMT2-231ENST00000557433 KIF20BQ96Q89 1820 aa20.35■□□□□ 0.85
SHMT2-231ENST00000557433 HSP90AB1P08238 724 aaKnown RBP20.33■□□□□ 0.84
SHMT2-231ENST00000557433 RAB3GAP1Q15042 981 aa20.33■□□□□ 0.84
SHMT2-231ENST00000557433 GRPEL1Q9HAV7 217 aa20.33■□□□□ 0.84
SHMT2-231ENST00000557433 YTHDC2Q9H6S0 1430 aaKnown RBP20.33■□□□□ 0.84
SHMT2-231ENST00000557433 LRRC7Q96NW7 1537 aa20.32■□□□□ 0.84
SHMT2-231ENST00000557433 UBE2Q2Q8WVN8 375 aa20.32■□□□□ 0.84
SHMT2-231ENST00000557433 KIF24Q5T7B8 1368 aa20.32■□□□□ 0.84
SHMT2-231ENST00000557433 ZBTB7BO15156 539 aaPredicted RBP20.31■□□□□ 0.84
SHMT2-231ENST00000557433 LNPKQ9C0E8 428 aa20.31■□□□□ 0.84
SHMT2-231ENST00000557433 DIP2CQ9Y2E4 1556 aa20.31■□□□□ 0.84
SHMT2-231ENST00000557433 IDI1Q13907 227 aa20.31■□□□□ 0.84
SHMT2-231ENST00000557433 GZF1Q9H116 711 aaPredicted RBP20.31■□□□□ 0.84
SHMT2-231ENST00000557433 TMEM131LA2VDJ0 1609 aa20.3■□□□□ 0.84
SHMT2-231ENST00000557433 ATP7BP35670 1465 aa20.3■□□□□ 0.84
SHMT2-231ENST00000557433 ARHGEF40Q8TER5 1519 aa20.3■□□□□ 0.84
SHMT2-231ENST00000557433 TNPO1Q92973 898 aaKnown RBP20.29■□□□□ 0.84
SHMT2-231ENST00000557433 IFT57Q9NWB7 429 aa20.29■□□□□ 0.84
SHMT2-231ENST00000557433 GNAI1P63096 354 aa20.29■□□□□ 0.84
SHMT2-231ENST00000557433 NFE2L2Q16236 605 aa20.29■□□□□ 0.84
SHMT2-231ENST00000557433 CLEC17AQ6ZS10 378 aa20.29■□□□□ 0.84
SHMT2-231ENST00000557433 MRPL50Q8N5N7 158 aaKnown RBP20.29■□□□□ 0.84
SHMT2-231ENST00000557433 K7ELQ4 463 aaPredicted RBP20.27■□□□□ 0.84
SHMT2-231ENST00000557433 PRAM1Q96QH2 718 aa20.27■□□□□ 0.84
SHMT2-231ENST00000557433 ABCC4O15439 1325 aa20.27■□□□□ 0.84
SHMT2-231ENST00000557433 VAMP4O75379 141 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms