RNA–Protein interactions for RNA: ENST00000557222.5

VRK1-206, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 1,029 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-206ENST00000557222 SPHKAPQ2M3C7 1700 aa13.13□□□□□ -0.31
VRK1-206ENST00000557222 XRN1Q8IZH2 1706 aaKnown RBP13.13□□□□□ -0.31
VRK1-206ENST00000557222 PHF8Q9UPP1 1060 aa13.13□□□□□ -0.31
VRK1-206ENST00000557222 LRP6O75581 1613 aa13.13□□□□□ -0.31
VRK1-206ENST00000557222 NRXN3Q9Y4C0 1643 aa13.13□□□□□ -0.31
VRK1-206ENST00000557222 C3orf67Q6ZVT6 689 aa13.12□□□□□ -0.31
VRK1-206ENST00000557222 LRRC59Q96AG4 307 aaKnown RBP13.12□□□□□ -0.31
VRK1-206ENST00000557222 BOLA1Q9Y3E2 137 aa13.12□□□□□ -0.31
VRK1-206ENST00000557222 MST1RQ04912 1400 aa13.12□□□□□ -0.31
VRK1-206ENST00000557222 METP08581 1390 aa13.11□□□□□ -0.31
VRK1-206ENST00000557222 ADGRL3Q9HAR2 1447 aa13.11□□□□□ -0.31
VRK1-206ENST00000557222 RRBP1Q9P2E9 1410 aaKnown RBP13.11□□□□□ -0.31
VRK1-206ENST00000557222 ASXL1Q8IXJ9 1541 aa13.1□□□□□ -0.31
VRK1-206ENST00000557222 MS4A4AQ96JQ5 239 aa13.1□□□□□ -0.31
VRK1-206ENST00000557222 RPGRIP1LQ68CZ1 1315 aa13.1□□□□□ -0.31
VRK1-206ENST00000557222 RXRBP28702 533 aa13.09□□□□□ -0.31
VRK1-206ENST00000557222 NAIPQ13075 1403 aa13.09□□□□□ -0.31
VRK1-206ENST00000557222 CDK12Q9NYV4 1490 aaPredicted RBP13.09□□□□□ -0.31
VRK1-206ENST00000557222 NEXMIFQ5QGS0 1516 aa13.08□□□□□ -0.31
VRK1-206ENST00000557222 G3V3G9 751 aa13.08□□□□□ -0.32
VRK1-206ENST00000557222 PTCH1Q13635 1447 aa13.07□□□□□ -0.32
VRK1-206ENST00000557222 PRAG1Q86YV5 1406 aa13.07□□□□□ -0.32
VRK1-206ENST00000557222 NHSL1Q5SYE7 1610 aa13.07□□□□□ -0.32
VRK1-206ENST00000557222 NLRP6P59044 892 aa13.07□□□□□ -0.32
VRK1-206ENST00000557222 UPF1Q92900 1129 aaKnown RBP eCLIP13.07□□□□□ -0.32
VRK1-206ENST00000557222 CLTCL1P53675 1640 aa13.06□□□□□ -0.32
VRK1-206ENST00000557222 FBXO22Q8NEZ5 403 aa13.06□□□□□ -0.32
VRK1-206ENST00000557222 FAM163AQ96GL9 167 aaPredicted RBP13.06□□□□□ -0.32
VRK1-206ENST00000557222 TMEM121BQ9BXQ6 578 aaPredicted RBP13.06□□□□□ -0.32
VRK1-206ENST00000557222 MFRPQ9BY79 579 aa13.06□□□□□ -0.32
VRK1-206ENST00000557222 KIF1BO60333 1816 aa13.06□□□□□ -0.32
VRK1-206ENST00000557222 NUTM2BA6NNL0 878 aaPredicted RBP13.05□□□□□ -0.32
VRK1-206ENST00000557222 NUTM2EB1AL46 878 aaPredicted RBP13.05□□□□□ -0.32
VRK1-206ENST00000557222 NUTM2AQ8IVF1 878 aaPredicted RBP13.05□□□□□ -0.32
VRK1-206ENST00000557222 AFF2P51816 1311 aa13.05□□□□□ -0.32
VRK1-206ENST00000557222 HFM1A2PYH4 1435 aa13.05□□□□□ -0.32
VRK1-206ENST00000557222 PPARGC1BQ86YN6 1023 aaKnown RBP13.04□□□□□ -0.32
VRK1-206ENST00000557222 PNPLA6Q8IY17 1366 aa13.04□□□□□ -0.32
VRK1-206ENST00000557222 C1orf167Q5SNV9 1468 aa13.04□□□□□ -0.32
VRK1-206ENST00000557222 SETD1AO15047 1707 aaKnown RBP13.03□□□□□ -0.32
VRK1-206ENST00000557222 LCE2DQ5TA82 110 aaPredicted RBP13.03□□□□□ -0.32
VRK1-206ENST00000557222 TRIM52Q96A61 297 aa13.03□□□□□ -0.32
VRK1-206ENST00000557222 LAMC1P11047 1609 aa13.02□□□□□ -0.32
VRK1-206ENST00000557222 RBM6P78332 1123 aaKnown RBP13.02□□□□□ -0.33
VRK1-206ENST00000557222 HS6ST3Q8IZP7 471 aa13.02□□□□□ -0.33
VRK1-206ENST00000557222 SOS2Q07890 1332 aaPredicted RBP13.02□□□□□ -0.33
VRK1-206ENST00000557222 QTRT2Q9H974 415 aaKnown RBP13.01□□□□□ -0.33
VRK1-206ENST00000557222 ROBO2Q9HCK4 1378 aa13.01□□□□□ -0.33
VRK1-206ENST00000557222 NALCNQ8IZF0 1738 aa13.01□□□□□ -0.33
VRK1-206ENST00000557222 MICALL2Q8IY33 904 aa13□□□□□ -0.33
VRK1-206ENST00000557222 DDX17Q92841 729 aaKnown RBP12.99□□□□□ -0.33
VRK1-206ENST00000557222 NGLY1Q96IV0 654 aa12.99□□□□□ -0.33
VRK1-206ENST00000557222 C8orf37Q96NL8 207 aa12.99□□□□□ -0.33
VRK1-206ENST00000557222 ACIN1Q9UKV3 1341 aaKnown RBP12.98□□□□□ -0.33
VRK1-206ENST00000557222 ORAI2Q96SN7 254 aa12.98□□□□□ -0.33
VRK1-206ENST00000557222 FNBP4Q8N3X1 1017 aaPredicted RBP12.97□□□□□ -0.33
VRK1-206ENST00000557222 NPHP3Q7Z494 1330 aa12.96□□□□□ -0.33
VRK1-206ENST00000557222 PPLO60437 1756 aa12.96□□□□□ -0.34
VRK1-206ENST00000557222 ANKRD30BQ9BXX2 1392 aa12.95□□□□□ -0.34
VRK1-206ENST00000557222 POTEMA6NI47 508 aa12.95□□□□□ -0.34
VRK1-206ENST00000557222 TRPC5Q9UL62 973 aaPredicted RBP12.95□□□□□ -0.34
VRK1-206ENST00000557222 RGS12O14924 1447 aa12.95□□□□□ -0.34
VRK1-206ENST00000557222 TECPR2O15040 1411 aa12.95□□□□□ -0.34
VRK1-206ENST00000557222 LRPPRCP42704 1394 aaKnown RBP12.94□□□□□ -0.34
VRK1-206ENST00000557222 SNPHO15079 494 aa12.94□□□□□ -0.34
VRK1-206ENST00000557222 ADAMTS2O95450 1211 aa12.94□□□□□ -0.34
VRK1-206ENST00000557222 POTEGQ6S5H5 508 aa12.94□□□□□ -0.34
VRK1-206ENST00000557222 USP21Q9UK80 565 aa12.94□□□□□ -0.34
VRK1-206ENST00000557222 CCDC144AA2RUR9 1427 aa12.94□□□□□ -0.34
VRK1-206ENST00000557222 CDC42BPGQ6DT37 1551 aa12.94□□□□□ -0.34
VRK1-206ENST00000557222 ABCC11Q96J66 1382 aa12.94□□□□□ -0.34
VRK1-206ENST00000557222 ST18O60284 1047 aa12.93□□□□□ -0.34
VRK1-206ENST00000557222 ESCO1Q5FWF5 840 aa12.93□□□□□ -0.34
VRK1-206ENST00000557222 SIRT1Q96EB6 747 aa12.93□□□□□ -0.34
VRK1-206ENST00000557222 ADGRF5Q8IZF2 1346 aa12.92□□□□□ -0.34
VRK1-206ENST00000557222 COL22A1Q8NFW1 1626 aaPredicted RBP12.92□□□□□ -0.34
VRK1-206ENST00000557222 SPATA31E1Q6ZUB1 1445 aa12.92□□□□□ -0.34
VRK1-206ENST00000557222 MYOM2P54296 1465 aa12.91□□□□□ -0.34
VRK1-206ENST00000557222 MPHOSPH9Q99550 1183 aa12.91□□□□□ -0.34
VRK1-206ENST00000557222 SRCAPQ6ZRS2 3230 aa12.91□□□□□ -0.34
VRK1-206ENST00000557222 ATAD2Q6PL18 1390 aa12.91□□□□□ -0.34
VRK1-206ENST00000557222 ATRNO75882 1429 aa12.9□□□□□ -0.34
VRK1-206ENST00000557222 TMEM92Q6UXU6 159 aa12.9□□□□□ -0.34
VRK1-206ENST00000557222 PXDNQ92626 1479 aa12.9□□□□□ -0.34
VRK1-206ENST00000557222 FOXO3O43524 673 aa12.89□□□□□ -0.35
VRK1-206ENST00000557222 RGL3Q3MIN7 710 aa12.89□□□□□ -0.35
VRK1-206ENST00000557222 CCDC125Q86Z20 511 aa12.89□□□□□ -0.35
VRK1-206ENST00000557222 WAPLQ7Z5K2 1190 aa12.88□□□□□ -0.35
VRK1-206ENST00000557222 PIK3C2GO75747 1445 aa12.88□□□□□ -0.35
VRK1-206ENST00000557222 EP400Q96L91 3159 aa12.87□□□□□ -0.35
VRK1-206ENST00000557222 C14orf93Q9H972 538 aaKnown RBP12.87□□□□□ -0.35
VRK1-206ENST00000557222 STK26Q9P289 416 aa12.87□□□□□ -0.35
VRK1-206ENST00000557222 BCL9LQ86UU0 1499 aa12.86□□□□□ -0.35
VRK1-206ENST00000557222 KNDC1Q76NI1 1749 aa12.86□□□□□ -0.35
VRK1-206ENST00000557222 PPP1R37O75864 691 aa12.86□□□□□ -0.35
VRK1-206ENST00000557222 YTHDC2Q9H6S0 1430 aaKnown RBP12.86□□□□□ -0.35
VRK1-206ENST00000557222 SPATA31A3Q5VYP0 1347 aa12.86□□□□□ -0.35
VRK1-206ENST00000557222 IFT172Q9UG01 1749 aa12.85□□□□□ -0.35
VRK1-206ENST00000557222 NKX1-1Q15270 411 aaPredicted RBP12.85□□□□□ -0.35
VRK1-206ENST00000557222 TMEM132EQ6IEE7 984 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms