RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 KRTAP17-1Q9BYP8 105 aa5.65□□□□□ -1.5
SLIRP-208ENST00000556956 PTGDRQ13258 359 aa5.64□□□□□ -1.51
SLIRP-208ENST00000556956 KRBA1A5PL33 1030 aa5.63□□□□□ -1.51
SLIRP-208ENST00000556956 ADH1CP00326 375 aa5.63□□□□□ -1.51
SLIRP-208ENST00000556956 MAP3K10Q02779 954 aa5.63□□□□□ -1.51
SLIRP-208ENST00000556956 RDH13Q8NBN7 331 aa5.63□□□□□ -1.51
SLIRP-208ENST00000556956 PTSQ03393 145 aa5.62□□□□□ -1.51
SLIRP-208ENST00000556956 ZMYM1Q5SVZ6 1142 aa5.62□□□□□ -1.51
SLIRP-208ENST00000556956 PTCRAQ6ISU1 281 aaPredicted RBP5.62□□□□□ -1.51
SLIRP-208ENST00000556956 ZFAND3Q9H8U3 227 aa5.62□□□□□ -1.51
SLIRP-208ENST00000556956 WDR70Q9NW82 654 aa5.62□□□□□ -1.51
SLIRP-208ENST00000556956 SOS2Q07890 1332 aaPredicted RBP5.62□□□□□ -1.51
SLIRP-208ENST00000556956 VWA5B2Q8N398 1253 aa5.61□□□□□ -1.51
SLIRP-208ENST00000556956 BEND7Q8N7W2 519 aaPredicted RBP5.61□□□□□ -1.51
SLIRP-208ENST00000556956 PXYLP1Q8TE99 480 aa5.61□□□□□ -1.51
SLIRP-208ENST00000556956 ARIH1Q9Y4X5 557 aaPredicted RBP5.61□□□□□ -1.51
SLIRP-208ENST00000556956 BMP2P12643 396 aa5.6□□□□□ -1.51
SLIRP-208ENST00000556956 SH3BP2P78314 561 aa5.6□□□□□ -1.51
SLIRP-208ENST00000556956 GCGRP47871 477 aa5.59□□□□□ -1.51
SLIRP-208ENST00000556956 CCDC155Q8N6L0 562 aa5.59□□□□□ -1.51
SLIRP-208ENST00000556956 USB1Q9BQ65 265 aaKnown RBP5.59□□□□□ -1.51
SLIRP-208ENST00000556956 SH3RF1Q7Z6J0 888 aa5.58□□□□□ -1.52
SLIRP-208ENST00000556956 CDC14CA4D256 554 aa5.57□□□□□ -1.52
SLIRP-208ENST00000556956 DDX11L8A8MPP1 907 aa5.57□□□□□ -1.52
SLIRP-208ENST00000556956 ZIC2O95409 532 aaPredicted RBP5.57□□□□□ -1.52
SLIRP-208ENST00000556956 FOXD4L6Q3SYB3 417 aaPredicted RBP5.57□□□□□ -1.52
SLIRP-208ENST00000556956 FOXD4L3Q6VB84 417 aaPredicted RBP5.57□□□□□ -1.52
SLIRP-208ENST00000556956 LINC00528Q8N1L1 170 aa5.57□□□□□ -1.52
SLIRP-208ENST00000556956 ITPKCQ96DU7 683 aa5.57□□□□□ -1.52
SLIRP-208ENST00000556956 ENAMQ9NRM1 1142 aa5.57□□□□□ -1.52
SLIRP-208ENST00000556956 SRSF11Q05519 484 aaKnown RBP5.56□□□□□ -1.52
SLIRP-208ENST00000556956 PODNQ7Z5L7 613 aa5.56□□□□□ -1.52
SLIRP-208ENST00000556956 E2F4Q16254 413 aa5.55□□□□□ -1.52
SLIRP-208ENST00000556956 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.55□□□□□ -1.523e-9■■■■□ 22.1
SLIRP-208ENST00000556956 Q3C1V9 767 aa5.55□□□□□ -1.52
SLIRP-208ENST00000556956 SV2AQ7L0J3 742 aa5.55□□□□□ -1.52
SLIRP-208ENST00000556956 SEMA6BQ9H3T3 888 aa5.55□□□□□ -1.52
SLIRP-208ENST00000556956 ARID1BQ8NFD5 2236 aaPredicted RBP5.55□□□□□ -1.52
SLIRP-208ENST00000556956 SCO2A0A1W2PP80 73 aa5.54□□□□□ -1.52
SLIRP-208ENST00000556956 COBLO75128 1261 aa5.54□□□□□ -1.52
SLIRP-208ENST00000556956 ITGA6P23229 1130 aa5.54□□□□□ -1.52
SLIRP-208ENST00000556956 PLEKHG3A1L390 1219 aa5.53□□□□□ -1.52
SLIRP-208ENST00000556956 FIGNL2A6NMB9 653 aa5.53□□□□□ -1.52
SLIRP-208ENST00000556956 GAS6Q14393 721 aa5.53□□□□□ -1.52
SLIRP-208ENST00000556956 METTL3Q86U44 580 aaKnown RBP5.53□□□□□ -1.52
SLIRP-208ENST00000556956 MPNDQ8N594 471 aa5.53□□□□□ -1.52
SLIRP-208ENST00000556956 SLC35F4A4IF30 521 aa5.52□□□□□ -1.53
SLIRP-208ENST00000556956 PLCB2Q00722 1185 aa5.52□□□□□ -1.53
SLIRP-208ENST00000556956 LINC01559Q495D7 138 aa5.52□□□□□ -1.53
SLIRP-208ENST00000556956 MEIOBQ8N635 442 aa5.52□□□□□ -1.53
SLIRP-208ENST00000556956 NEDD1Q8NHV4 660 aa5.52□□□□□ -1.53
SLIRP-208ENST00000556956 NLRP7Q8WX94 980 aa5.52□□□□□ -1.53
SLIRP-208ENST00000556956 DAXXQ9UER7 740 aaPredicted RBP5.52□□□□□ -1.53
SLIRP-208ENST00000556956 UPP2O95045 317 aa5.51□□□□□ -1.53
SLIRP-208ENST00000556956 OATP04181 439 aa5.51□□□□□ -1.53
SLIRP-208ENST00000556956 COL8A1P27658 744 aa5.51□□□□□ -1.53
SLIRP-208ENST00000556956 TTLL8A6PVC2 850 aa5.5□□□□□ -1.53
SLIRP-208ENST00000556956 NR3C2P08235 984 aa5.5□□□□□ -1.53
SLIRP-208ENST00000556956 JUNDP17535 347 aa5.49□□□□□ -1.53
SLIRP-208ENST00000556956 MLLT3P42568 568 aaPredicted RBP5.49□□□□□ -1.53
SLIRP-208ENST00000556956 SNRPNP63162 240 aaKnown RBP5.49□□□□□ -1.53
SLIRP-208ENST00000556956 NUDT12Q9BQG2 462 aa5.49□□□□□ -1.53
SLIRP-208ENST00000556956 ZFP64Q9NPA5 681 aa5.49□□□□□ -1.53
SLIRP-208ENST00000556956 TSHZ2Q9NRE2 1034 aa5.49□□□□□ -1.53
SLIRP-208ENST00000556956 VARSP26640 1264 aaKnown RBP5.48□□□□□ -1.53
SLIRP-208ENST00000556956 GRIPAP1Q4V328 841 aa5.48□□□□□ -1.53
SLIRP-208ENST00000556956 ARTNQ5T4W7 220 aa5.48□□□□□ -1.53
SLIRP-208ENST00000556956 BAP1Q92560 729 aa5.48□□□□□ -1.53
SLIRP-208ENST00000556956 HLA-CQ95604 372 aa5.48□□□□□ -1.53
SLIRP-208ENST00000556956 BCRP11274 1271 aa5.47□□□□□ -1.53
SLIRP-208ENST00000556956 P3H3Q8IVL6 736 aa5.47□□□□□ -1.53
SLIRP-208ENST00000556956 C1QTNF9BB2RNN3 333 aa5.46□□□□□ -1.54
SLIRP-208ENST00000556956 DOC2BQ14184 412 aa5.46□□□□□ -1.54
SLIRP-208ENST00000556956 ARHGEF1Q92888 912 aaKnown RBP5.46□□□□□ -1.54
SLIRP-208ENST00000556956 NUTM2FA1L443 756 aa5.45□□□□□ -1.54
SLIRP-208ENST00000556956 NBPF11Q86T75 865 aa5.45□□□□□ -1.54
SLIRP-208ENST00000556956 HAP1P54257 671 aaPredicted RBP5.44□□□□□ -1.54
SLIRP-208ENST00000556956 CD163Q86VB7 1156 aa5.44□□□□□ -1.54
SLIRP-208ENST00000556956 ZNF511Q8NB15 262 aa5.44□□□□□ -1.54
SLIRP-208ENST00000556956 ACDQ96AP0 544 aa5.44□□□□□ -1.54
SLIRP-208ENST00000556956 KRTAP4-11Q9BYQ6 195 aa5.44□□□□□ -1.54
SLIRP-208ENST00000556956 IGF1RP08069 1367 aa5.43□□□□□ -1.54
SLIRP-208ENST00000556956 ARID5BQ14865 1188 aa5.43□□□□□ -1.54
SLIRP-208ENST00000556956 SYMPKQ92797 1274 aaKnown RBP5.43□□□□□ -1.54
SLIRP-208ENST00000556956 CDK15Q96Q40 435 aa5.43□□□□□ -1.54
SLIRP-208ENST00000556956 TSEN34Q9BSV6 310 aaKnown RBP5.43□□□□□ -1.54
SLIRP-208ENST00000556956 UNC93B1Q9H1C4 597 aa5.43□□□□□ -1.54
SLIRP-208ENST00000556956 CUEDC1Q9NWM3 386 aaPredicted RBP5.43□□□□□ -1.54
SLIRP-208ENST00000556956 SENP3-EIF4A1A0A087X0R7 540 aa5.42□□□□□ -1.54
SLIRP-208ENST00000556956 LAMC2Q13753 1193 aa5.42□□□□□ -1.54
SLIRP-208ENST00000556956 SULF1Q8IWU6 871 aa5.42□□□□□ -1.54
SLIRP-208ENST00000556956 GRM5P41594 1212 aa5.41□□□□□ -1.54
SLIRP-208ENST00000556956 CHRNA4P43681 627 aa5.41□□□□□ -1.54
SLIRP-208ENST00000556956 KRTAP4-5Q9BYR2 181 aa5.41□□□□□ -1.54
SLIRP-208ENST00000556956 NR5A1Q13285 461 aa5.4□□□□□ -1.54
SLIRP-208ENST00000556956 GRIN2CQ14957 1233 aa5.4□□□□□ -1.54
SLIRP-208ENST00000556956 ALYREFQ86V81 257 aaKnown RBP5.4□□□□□ -1.54
SLIRP-208ENST00000556956 VSIG10Q8N0Z9 540 aa5.4□□□□□ -1.54
SLIRP-208ENST00000556956 MBIPQ9NS73 344 aa5.4□□□□□ -1.54
SLIRP-208ENST00000556956 SPTLC1O15269 473 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 94.2 ms