RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 NUTM2BA6NNL0 878 aaPredicted RBP24.4■■□□□ 1.5
SHMT2-225ENST00000556798 NUTM2EB1AL46 878 aaPredicted RBP24.4■■□□□ 1.5
SHMT2-225ENST00000556798 PLEKHG5O94827 1062 aa24.4■■□□□ 1.5
SHMT2-225ENST00000556798 CDCA8Q53HL2 280 aa24.4■■□□□ 1.5
SHMT2-225ENST00000556798 NUTM2AQ8IVF1 878 aaPredicted RBP24.4■■□□□ 1.5
SHMT2-225ENST00000556798 POLR3GLQ9BT43 218 aa24.4■■□□□ 1.5
SHMT2-225ENST00000556798 MARF1Q9Y4F3 1742 aaKnown RBP24.4■■□□□ 1.5
SHMT2-225ENST00000556798 ARHGEF10O15013 1369 aa24.39■■□□□ 1.49
SHMT2-225ENST00000556798 PIK3C2AO00443 1686 aa24.38■■□□□ 1.49
SHMT2-225ENST00000556798 A0A1W2PP64 1363 aa24.38■■□□□ 1.49
SHMT2-225ENST00000556798 KTN1Q86UP2 1357 aaKnown RBP24.38■■□□□ 1.49
SHMT2-225ENST00000556798 NINLQ9Y2I6 1382 aa24.38■■□□□ 1.49
SHMT2-225ENST00000556798 SSH2Q76I76 1423 aa24.36■■□□□ 1.49
SHMT2-225ENST00000556798 PHRF1Q9P1Y6 1649 aaKnown RBP24.36■■□□□ 1.49
SHMT2-225ENST00000556798 C11orf95C9JLR9 678 aaPredicted RBP24.36■■□□□ 1.49
SHMT2-225ENST00000556798 ZEB1P37275 1124 aaPredicted RBP24.35■■□□□ 1.49
SHMT2-225ENST00000556798 HDGFL2Q7Z4V5 671 aaPredicted RBP24.34■■□□□ 1.49
SHMT2-225ENST00000556798 CABLES1Q8TDN4 633 aa24.34■■□□□ 1.49
SHMT2-225ENST00000556798 ZNF692Q9BU19 519 aaPredicted RBP24.34■■□□□ 1.49
SHMT2-225ENST00000556798 BRD4O60885 1362 aaPredicted RBP24.33■■□□□ 1.49
SHMT2-225ENST00000556798 NUTM2GQ5VZR2 741 aa24.33■■□□□ 1.49
SHMT2-225ENST00000556798 TERF2IPQ9NYB0 399 aa24.33■■□□□ 1.49
SHMT2-225ENST00000556798 ANKRD36BQ8N2N9 1353 aa24.31■■□□□ 1.48
SHMT2-225ENST00000556798 ADAMTS2O95450 1211 aa24.31■■□□□ 1.48
SHMT2-225ENST00000556798 MEX3CQ5U5Q3 659 aaKnown RBP24.31■■□□□ 1.48
SHMT2-225ENST00000556798 ABTB2Q8N961 1025 aa24.31■■□□□ 1.48
SHMT2-225ENST00000556798 TTC21BQ7Z4L5 1316 aa24.31■■□□□ 1.48
SHMT2-225ENST00000556798 EDC4Q6P2E9 1401 aaKnown RBP24.29■■□□□ 1.48
SHMT2-225ENST00000556798 KIF7Q2M1P5 1343 aa24.29■■□□□ 1.48
SHMT2-225ENST00000556798 KIF20BQ96Q89 1820 aa24.28■■□□□ 1.48
SHMT2-225ENST00000556798 HAP1P54257 671 aaPredicted RBP24.28■■□□□ 1.48
SHMT2-225ENST00000556798 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.28■■□□□ 1.48
SHMT2-225ENST00000556798 USP54Q70EL1 1684 aa24.27■■□□□ 1.48
SHMT2-225ENST00000556798 TTC21AQ8NDW8 1320 aa24.26■■□□□ 1.47
SHMT2-225ENST00000556798 PHF23Q9BUL5 403 aaPredicted RBP24.24■■□□□ 1.47
SHMT2-225ENST00000556798 PLCH1Q4KWH8 1693 aa24.24■■□□□ 1.47
SHMT2-225ENST00000556798 NLRP6P59044 892 aa24.23■■□□□ 1.47
SHMT2-225ENST00000556798 NME9Q86XW9 330 aa24.23■■□□□ 1.47
SHMT2-225ENST00000556798 C8orf37Q96NL8 207 aa24.23■■□□□ 1.47
SHMT2-225ENST00000556798 SLIT3O75094 1523 aa24.22■■□□□ 1.47
SHMT2-225ENST00000556798 CCDC7Q96M83 1385 aa24.22■■□□□ 1.47
SHMT2-225ENST00000556798 USP19O94966 1318 aa24.22■■□□□ 1.47
SHMT2-225ENST00000556798 NLRP13Q86W25 1043 aa24.22■■□□□ 1.47
SHMT2-225ENST00000556798 ZRANB1Q9UGI0 708 aa24.22■■□□□ 1.47
SHMT2-225ENST00000556798 NSD3Q9BZ95 1437 aa24.21■■□□□ 1.47
SHMT2-225ENST00000556798 WASHC2AQ641Q2 1341 aa24.21■■□□□ 1.47
SHMT2-225ENST00000556798 CARD14Q9BXL6 1004 aa24.19■■□□□ 1.46
SHMT2-225ENST00000556798 COL14A1Q05707 1796 aaKnown RBP24.19■■□□□ 1.46
SHMT2-225ENST00000556798 AFF2P51816 1311 aa24.17■■□□□ 1.46
SHMT2-225ENST00000556798 NGLY1Q96IV0 654 aa24.17■■□□□ 1.46
SHMT2-225ENST00000556798 RGS17Q9UGC6 210 aaPredicted RBP24.17■■□□□ 1.46
SHMT2-225ENST00000556798 USP31Q70CQ4 1352 aa24.16■■□□□ 1.46
SHMT2-225ENST00000556798 NWD2Q9ULI1 1742 aa24.16■■□□□ 1.46
SHMT2-225ENST00000556798 PANK3Q9H999 370 aa24.16■■□□□ 1.46
SHMT2-225ENST00000556798 OVOS2A0A0J9YW53 1432 aa24.16■■□□□ 1.46
SHMT2-225ENST00000556798 OVOS2Q6IE36 1432 aa24.16■■□□□ 1.46
SHMT2-225ENST00000556798 LTN1O94822 1766 aa24.16■■□□□ 1.46
SHMT2-225ENST00000556798 SOX12O15370 315 aa24.15■■□□□ 1.46
SHMT2-225ENST00000556798 ZC3H6P61129 1189 aaKnown RBP24.15■■□□□ 1.46
SHMT2-225ENST00000556798 ANKRD26Q9UPS8 1709 aa24.15■■□□□ 1.46
SHMT2-225ENST00000556798 KIAA0232Q92628 1395 aa24.15■■□□□ 1.46
SHMT2-225ENST00000556798 NFAT5O94916 1531 aa24.15■■□□□ 1.46
SHMT2-225ENST00000556798 GCP02774 474 aa24.14■■□□□ 1.45
SHMT2-225ENST00000556798 NRAPQ86VF7 1730 aa24.14■■□□□ 1.45
SHMT2-225ENST00000556798 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.14■■□□□ 1.45
SHMT2-225ENST00000556798 SLIT2O94813 1529 aa24.12■■□□□ 1.45
SHMT2-225ENST00000556798 RGPD5Q99666 1765 aa24.11■■□□□ 1.45
SHMT2-225ENST00000556798 FAM83GA6ND36 823 aa24.11■■□□□ 1.45
SHMT2-225ENST00000556798 CHRNA2Q15822 529 aa24.11■■□□□ 1.45
SHMT2-225ENST00000556798 GGNBP2Q9H3C7 697 aa24.11■■□□□ 1.45
SHMT2-225ENST00000556798 PRDM11Q9NQV5 511 aa24.11■■□□□ 1.45
SHMT2-225ENST00000556798 LMO7Q8WWI1 1683 aa24.11■■□□□ 1.45
SHMT2-225ENST00000556798 FYB1O15117 783 aa24.1■■□□□ 1.45
SHMT2-225ENST00000556798 COL18A1P39060 1754 aa24.09■■□□□ 1.45
SHMT2-225ENST00000556798 BCL9LQ86UU0 1499 aa24.09■■□□□ 1.45
SHMT2-225ENST00000556798 CPDO75976 1380 aa24.09■■□□□ 1.45
SHMT2-225ENST00000556798 ZBTB7CA1YPR0 619 aa24.09■■□□□ 1.45
SHMT2-225ENST00000556798 FNBP4Q8N3X1 1017 aaPredicted RBP24.09■■□□□ 1.45
SHMT2-225ENST00000556798 COG3Q96JB2 828 aa24.09■■□□□ 1.45
SHMT2-225ENST00000556798 USP21Q9UK80 565 aa24.09■■□□□ 1.45
SHMT2-225ENST00000556798 ZNF772Q68DY9 489 aaPredicted RBP24.08■■□□□ 1.45
SHMT2-225ENST00000556798 POTEAQ6S8J7 498 aa24.07■■□□□ 1.44
SHMT2-225ENST00000556798 KCNH5Q8NCM2 988 aa24.07■■□□□ 1.44
SHMT2-225ENST00000556798 CGNL1Q0VF96 1302 aa24.07■■□□□ 1.44
SHMT2-225ENST00000556798 BTG4Q9NY30 223 aa24.05■■□□□ 1.44
SHMT2-225ENST00000556798 CAMTA1Q9Y6Y1 1673 aa24.05■■□□□ 1.44
SHMT2-225ENST00000556798 ATRNO75882 1429 aa24.02■■□□□ 1.44
SHMT2-225ENST00000556798 ARHGEF25Q86VW2 580 aa24.02■■□□□ 1.44
SHMT2-225ENST00000556798 UNC5CLQ8IV45 518 aa24.02■■□□□ 1.44
SHMT2-225ENST00000556798 MAP2P11137 1827 aaKnown RBP24.01■■□□□ 1.43
SHMT2-225ENST00000556798 FBLN1P23142 703 aa24.01■■□□□ 1.43
SHMT2-225ENST00000556798 KNSTRNQ9Y448 316 aa24.01■■□□□ 1.43
SHMT2-225ENST00000556798 QTRT2Q9H974 415 aaKnown RBP24■■□□□ 1.43
SHMT2-225ENST00000556798 TRPC5Q9UL62 973 aaPredicted RBP23.99■■□□□ 1.43
SHMT2-225ENST00000556798 AATKQ6ZMQ8 1374 aa23.99■■□□□ 1.43
SHMT2-225ENST00000556798 GLI3P10071 1580 aa23.99■■□□□ 1.43
SHMT2-225ENST00000556798 COL5A2P05997 1499 aaPredicted RBP23.98■■□□□ 1.43
SHMT2-225ENST00000556798 ABCC6O95255 1503 aa23.98■■□□□ 1.43
SHMT2-225ENST00000556798 PEAK1Q9H792 1746 aa23.98■■□□□ 1.43
SHMT2-225ENST00000556798 PER1O15534 1290 aaPredicted RBP23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms