RNA–Protein interactions for RNA: ENST00000556461.1

VTI1B-206, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 576 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-206ENST00000556461 EVC2Q86UK5 1308 aa11.56□□□□□ -0.56
VTI1B-206ENST00000556461 SLIT2O94813 1529 aa11.55□□□□□ -0.56
VTI1B-206ENST00000556461 ABCA3Q99758 1704 aa11.55□□□□□ -0.56
VTI1B-206ENST00000556461 MARF1Q9Y4F3 1742 aaKnown RBP11.55□□□□□ -0.56
VTI1B-206ENST00000556461 RGS12O14924 1447 aa11.55□□□□□ -0.56
VTI1B-206ENST00000556461 FAM83GA6ND36 823 aa11.55□□□□□ -0.56
VTI1B-206ENST00000556461 HAP1P54257 671 aaPredicted RBP11.55□□□□□ -0.56
VTI1B-206ENST00000556461 TRPC5Q9UL62 973 aaPredicted RBP11.55□□□□□ -0.56
VTI1B-206ENST00000556461 CDK12Q9NYV4 1490 aaPredicted RBP11.53□□□□□ -0.56
VTI1B-206ENST00000556461 UNC5CLQ8IV45 518 aa11.53□□□□□ -0.56
VTI1B-206ENST00000556461 CRYBG1Q9Y4K1 1723 aa11.52□□□□□ -0.56
VTI1B-206ENST00000556461 ABTB2Q8N961 1025 aa11.51□□□□□ -0.57
VTI1B-206ENST00000556461 GJD4Q96KN9 370 aaPredicted RBP11.51□□□□□ -0.57
VTI1B-206ENST00000556461 SBNO2Q9Y2G9 1366 aa11.51□□□□□ -0.57
VTI1B-206ENST00000556461 USP6P35125 1406 aa11.51□□□□□ -0.57
VTI1B-206ENST00000556461 SSH2Q76I76 1423 aa11.51□□□□□ -0.57
VTI1B-206ENST00000556461 ST20-MTHFSA0A0A6YYL1 179 aa11.5□□□□□ -0.57
VTI1B-206ENST00000556461 TESK2Q96S53 571 aa11.5□□□□□ -0.57
VTI1B-206ENST00000556461 GLI3P10071 1580 aa11.5□□□□□ -0.57
VTI1B-206ENST00000556461 PLCH1Q4KWH8 1693 aa11.49□□□□□ -0.57
VTI1B-206ENST00000556461 ZC3H6P61129 1189 aaKnown RBP11.49□□□□□ -0.57
VTI1B-206ENST00000556461 CHRNA2Q15822 529 aa11.49□□□□□ -0.57
VTI1B-206ENST00000556461 UPF1Q92900 1129 aaKnown RBP eCLIP11.49□□□□□ -0.571e-7■□□□□ 10
VTI1B-206ENST00000556461 BTG4Q9NY30 223 aa11.49□□□□□ -0.57
VTI1B-206ENST00000556461 USP19O94966 1318 aa11.49□□□□□ -0.57
VTI1B-206ENST00000556461 CLSPNQ9HAW4 1339 aa11.49□□□□□ -0.57
VTI1B-206ENST00000556461 KIAA0232Q92628 1395 aa11.49□□□□□ -0.57
VTI1B-206ENST00000556461 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.49□□□□□ -0.57
VTI1B-206ENST00000556461 EP400Q96L91 3159 aa11.48□□□□□ -0.57
VTI1B-206ENST00000556461 VPS72Q15906 364 aa11.48□□□□□ -0.57
VTI1B-206ENST00000556461 PRDM11Q9NQV5 511 aa11.48□□□□□ -0.57
VTI1B-206ENST00000556461 ATAD2Q6PL18 1390 aa11.48□□□□□ -0.57
VTI1B-206ENST00000556461 PHRF1Q9P1Y6 1649 aaKnown RBP11.48□□□□□ -0.57
VTI1B-206ENST00000556461 NRAPQ86VF7 1730 aa11.47□□□□□ -0.57
VTI1B-206ENST00000556461 CD163L1Q9NR16 1453 aa11.47□□□□□ -0.57
VTI1B-206ENST00000556461 CPSF1Q10570 1443 aaKnown RBP11.47□□□□□ -0.57
VTI1B-206ENST00000556461 TTC21BQ7Z4L5 1316 aa11.47□□□□□ -0.57
VTI1B-206ENST00000556461 CCER1Q8TC90 406 aaPredicted RBP11.47□□□□□ -0.57
VTI1B-206ENST00000556461 NRKQ7Z2Y5 1582 aa11.46□□□□□ -0.57
VTI1B-206ENST00000556461 USP47Q96K76 1375 aa11.46□□□□□ -0.57
VTI1B-206ENST00000556461 TMC1Q8TDI8 760 aa11.46□□□□□ -0.57
VTI1B-206ENST00000556461 SLC12A5Q9H2X9 1139 aa11.46□□□□□ -0.57
VTI1B-206ENST00000556461 TIMELESSQ9UNS1 1208 aa11.46□□□□□ -0.57
VTI1B-206ENST00000556461 CCDC9Q9Y3X0 531 aaKnown RBP11.46□□□□□ -0.57
VTI1B-206ENST00000556461 COL14A1Q05707 1796 aaKnown RBP11.46□□□□□ -0.58
VTI1B-206ENST00000556461 NWD2Q9ULI1 1742 aa11.46□□□□□ -0.58
VTI1B-206ENST00000556461 BRD4O60885 1362 aaPredicted RBP11.45□□□□□ -0.58
VTI1B-206ENST00000556461 GCP02774 474 aa11.45□□□□□ -0.58
VTI1B-206ENST00000556461 NLRP6P59044 892 aa11.45□□□□□ -0.58
VTI1B-206ENST00000556461 NLRP13Q86W25 1043 aa11.45□□□□□ -0.58
VTI1B-206ENST00000556461 ZNF692Q9BU19 519 aaPredicted RBP11.45□□□□□ -0.58
VTI1B-206ENST00000556461 ZRANB1Q9UGI0 708 aa11.45□□□□□ -0.58
VTI1B-206ENST00000556461 PIK3C2AO00443 1686 aa11.45□□□□□ -0.58
VTI1B-206ENST00000556461 AKAP12Q02952 1782 aa11.44□□□□□ -0.58
VTI1B-206ENST00000556461 KTN1Q86UP2 1357 aaKnown RBP11.44□□□□□ -0.58
VTI1B-206ENST00000556461 CPDO75976 1380 aa11.43□□□□□ -0.58
VTI1B-206ENST00000556461 SPATA31A5Q5VU36 1347 aa11.43□□□□□ -0.58
VTI1B-206ENST00000556461 SPATA31A7Q8IWB4 1347 aa11.43□□□□□ -0.58
VTI1B-206ENST00000556461 ONECUT3O60422 494 aaPredicted RBP11.43□□□□□ -0.58
VTI1B-206ENST00000556461 FAM98CQ17RN3 349 aaKnown RBP11.43□□□□□ -0.58
VTI1B-206ENST00000556461 SEPT12Q8IYM1 358 aa11.43□□□□□ -0.58
VTI1B-206ENST00000556461 SLIT3O75094 1523 aa11.43□□□□□ -0.58
VTI1B-206ENST00000556461 CAMTA1Q9Y6Y1 1673 aa11.43□□□□□ -0.58
VTI1B-206ENST00000556461 A0A1W2PP64 1363 aa11.42□□□□□ -0.58
VTI1B-206ENST00000556461 ZBTB7CA1YPR0 619 aa11.42□□□□□ -0.58
VTI1B-206ENST00000556461 NME9Q86XW9 330 aa11.42□□□□□ -0.58
VTI1B-206ENST00000556461 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.42□□□□□ -0.58
VTI1B-206ENST00000556461 PUS7Q96PZ0 661 aaKnown RBP11.42□□□□□ -0.58
VTI1B-206ENST00000556461 STRN4Q9NRL3 753 aa11.42□□□□□ -0.58
VTI1B-206ENST00000556461 TTC21AQ8NDW8 1320 aa11.41□□□□□ -0.58
VTI1B-206ENST00000556461 SOX12O15370 315 aa11.41□□□□□ -0.58
VTI1B-206ENST00000556461 LARP1Q6PKG0 1096 aaKnown RBP11.41□□□□□ -0.58
VTI1B-206ENST00000556461 MON2Q7Z3U7 1717 aa11.4□□□□□ -0.58
VTI1B-206ENST00000556461 SPATA31A1Q5TZJ5 1347 aa11.4□□□□□ -0.58
VTI1B-206ENST00000556461 LMO7Q8WWI1 1683 aa11.4□□□□□ -0.58
VTI1B-206ENST00000556461 HDGFL2Q7Z4V5 671 aaPredicted RBP11.4□□□□□ -0.58
VTI1B-206ENST00000556461 TMF1P82094 1093 aa11.39□□□□□ -0.59
VTI1B-206ENST00000556461 ARHGEF25Q86VW2 580 aa11.39□□□□□ -0.59
VTI1B-206ENST00000556461 AXIN2Q9Y2T1 843 aa11.39□□□□□ -0.59
VTI1B-206ENST00000556461 BRWD3Q6RI45 1802 aa11.39□□□□□ -0.59
VTI1B-206ENST00000556461 USP31Q70CQ4 1352 aa11.39□□□□□ -0.59
VTI1B-206ENST00000556461 EDC4Q6P2E9 1401 aaKnown RBP11.38□□□□□ -0.59
VTI1B-206ENST00000556461 A0A0G2JS52 829 aa11.38□□□□□ -0.59
VTI1B-206ENST00000556461 EVA1CP58658 441 aa11.38□□□□□ -0.59
VTI1B-206ENST00000556461 MYT1Q01538 1121 aa11.38□□□□□ -0.59
VTI1B-206ENST00000556461 TERF2IPQ9NYB0 399 aa11.38□□□□□ -0.59
VTI1B-206ENST00000556461 USP35Q9P2H5 1018 aa11.38□□□□□ -0.59
VTI1B-206ENST00000556461 NFAT5O94916 1531 aa11.38□□□□□ -0.59
VTI1B-206ENST00000556461 AATKQ6ZMQ8 1374 aa11.38□□□□□ -0.59
VTI1B-206ENST00000556461 COL5A2P05997 1499 aaPredicted RBP11.38□□□□□ -0.59
VTI1B-206ENST00000556461 COL18A1P39060 1754 aa11.37□□□□□ -0.59
VTI1B-206ENST00000556461 FAM182BQ5T319 152 aa11.37□□□□□ -0.59
VTI1B-206ENST00000556461 KRT27Q7Z3Y8 459 aa11.37□□□□□ -0.59
VTI1B-206ENST00000556461 KCNH5Q8NCM2 988 aa11.36□□□□□ -0.59
VTI1B-206ENST00000556461 NINLQ9Y2I6 1382 aa11.36□□□□□ -0.59
VTI1B-206ENST00000556461 THSD7AQ9UPZ6 1657 aa11.36□□□□□ -0.59
VTI1B-206ENST00000556461 SLC24A1O60721 1099 aa11.35□□□□□ -0.59
VTI1B-206ENST00000556461 HSPA5P11021 654 aaKnown RBP11.35□□□□□ -0.59
VTI1B-206ENST00000556461 ANKRD36BQ8N2N9 1353 aa11.35□□□□□ -0.59
VTI1B-206ENST00000556461 OVOS2A0A0J9YW53 1432 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms