RNA–Protein interactions for RNA: ENST00000556342.1

SYNE2-221, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5

Gene SYNE2, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-221ENST00000556342 MPHOSPH9Q99550 1183 aa16■□□□□ 0.15
SYNE2-221ENST00000556342 FMN2Q9NZ56 1722 aa15.99■□□□□ 0.15
SYNE2-221ENST00000556342 IFT172Q9UG01 1749 aa15.99■□□□□ 0.15
SYNE2-221ENST00000556342 RALGAPBQ86X10 1494 aa15.99■□□□□ 0.15
SYNE2-221ENST00000556342 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.99■□□□□ 0.15
SYNE2-221ENST00000556342 KIF1AQ12756 1690 aa15.99■□□□□ 0.15
SYNE2-221ENST00000556342 KRT28Q7Z3Y7 464 aa15.98■□□□□ 0.15
SYNE2-221ENST00000556342 SIRT1Q96EB6 747 aa15.98■□□□□ 0.15
SYNE2-221ENST00000556342 GLI3P10071 1580 aa15.97■□□□□ 0.15
SYNE2-221ENST00000556342 TNS3Q68CZ2 1445 aa15.96■□□□□ 0.15
SYNE2-221ENST00000556342 USP32Q8NFA0 1604 aa15.96■□□□□ 0.15
SYNE2-221ENST00000556342 BLMP54132 1417 aaPredicted RBP15.95■□□□□ 0.14
SYNE2-221ENST00000556342 CD44P16070 742 aaKnown RBP15.95■□□□□ 0.14
SYNE2-221ENST00000556342 HAP1P54257 671 aaPredicted RBP15.95■□□□□ 0.14
SYNE2-221ENST00000556342 PLCD3Q8N3E9 789 aa15.95■□□□□ 0.14
SYNE2-221ENST00000556342 C14orf93Q9H972 538 aaKnown RBP15.95■□□□□ 0.14
SYNE2-221ENST00000556342 PHF8Q9UPP1 1060 aa15.95■□□□□ 0.14
SYNE2-221ENST00000556342 PSME1Q06323 249 aa15.94■□□□□ 0.14
SYNE2-221ENST00000556342 NRXN1Q9ULB1 1477 aa15.93■□□□□ 0.14
SYNE2-221ENST00000556342 VPS72Q15906 364 aa15.93■□□□□ 0.14
SYNE2-221ENST00000556342 CFAP70Q5T0N1 1121 aa15.93■□□□□ 0.14
SYNE2-221ENST00000556342 CABLES1Q8TDN4 633 aa15.93■□□□□ 0.14
SYNE2-221ENST00000556342 SBNO1A3KN83 1393 aa15.92■□□□□ 0.14
SYNE2-221ENST00000556342 DHX57Q6P158 1386 aaKnown RBP15.92■□□□□ 0.14
SYNE2-221ENST00000556342 SEPT12Q8IYM1 358 aa15.92■□□□□ 0.14
SYNE2-221ENST00000556342 DEFB132Q7Z7B7 95 aa15.91■□□□□ 0.14
SYNE2-221ENST00000556342 PRAM1Q96QH2 718 aa15.91■□□□□ 0.14
SYNE2-221ENST00000556342 ARHGEF10O15013 1369 aa15.9■□□□□ 0.14
SYNE2-221ENST00000556342 SAFB2Q14151 953 aaKnown RBP eCLIP15.9■□□□□ 0.14
SYNE2-221ENST00000556342 ONECUT3O60422 494 aaPredicted RBP15.89■□□□□ 0.13
SYNE2-221ENST00000556342 SF3B2Q13435 895 aaKnown RBP15.89■□□□□ 0.13
SYNE2-221ENST00000556342 LMOD2Q6P5Q4 547 aa15.89■□□□□ 0.13
SYNE2-221ENST00000556342 CCDC9Q9Y3X0 531 aaKnown RBP15.89■□□□□ 0.13
SYNE2-221ENST00000556342 ANKARQ7Z5J8 1434 aa15.88■□□□□ 0.13
SYNE2-221ENST00000556342 RGPD8O14715 1765 aaPredicted RBP15.87■□□□□ 0.13
SYNE2-221ENST00000556342 PLCH1Q4KWH8 1693 aa15.87■□□□□ 0.13
SYNE2-221ENST00000556342 KRT27Q7Z3Y8 459 aa15.87■□□□□ 0.13
SYNE2-221ENST00000556342 PMFBP1Q8TBY8 1022 aa15.87■□□□□ 0.13
SYNE2-221ENST00000556342 POGKQ9P215 609 aa15.87■□□□□ 0.13
SYNE2-221ENST00000556342 NWD2Q9ULI1 1742 aa15.87■□□□□ 0.13
SYNE2-221ENST00000556342 DLC1Q96QB1 1528 aa15.87■□□□□ 0.13
SYNE2-221ENST00000556342 ACIN1Q9UKV3 1341 aaKnown RBP15.87■□□□□ 0.13
SYNE2-221ENST00000556342 BRWD3Q6RI45 1802 aa15.87■□□□□ 0.13
SYNE2-221ENST00000556342 FAM83GA6ND36 823 aa15.86■□□□□ 0.13
SYNE2-221ENST00000556342 ZBTB47Q9UFB7 747 aaPredicted RBP15.86■□□□□ 0.13
SYNE2-221ENST00000556342 ABCA3Q99758 1704 aa15.85■□□□□ 0.13
SYNE2-221ENST00000556342 VASPP50552 380 aaPredicted RBP15.85■□□□□ 0.13
SYNE2-221ENST00000556342 ADGRB2O60241 1585 aa15.84■□□□□ 0.13
SYNE2-221ENST00000556342 ADGRB1O14514 1584 aa15.83■□□□□ 0.13
SYNE2-221ENST00000556342 A0A0G2JS52 829 aa15.83■□□□□ 0.12
SYNE2-221ENST00000556342 MYT1Q01538 1121 aa15.83■□□□□ 0.12
SYNE2-221ENST00000556342 HIRIP3Q9BW71 556 aaPredicted RBP15.82■□□□□ 0.12
SYNE2-221ENST00000556342 BTG4Q9NY30 223 aa15.82■□□□□ 0.12
SYNE2-221ENST00000556342 EIF3AQ14152 1382 aaKnown RBP15.81■□□□□ 0.12
SYNE2-221ENST00000556342 FAM98CQ17RN3 349 aaKnown RBP15.81■□□□□ 0.12
SYNE2-221ENST00000556342 GPRASP1Q5JY77 1395 aa15.81■□□□□ 0.12
SYNE2-221ENST00000556342 PRR36Q9H6K5 1346 aa15.81■□□□□ 0.12
SYNE2-221ENST00000556342 TRAK1Q9UPV9 953 aa15.81■□□□□ 0.12
SYNE2-221ENST00000556342 NRAPQ86VF7 1730 aa15.8■□□□□ 0.12
SYNE2-221ENST00000556342 TRPM3Q9HCF6 1732 aaPredicted RBP15.8■□□□□ 0.12
SYNE2-221ENST00000556342 MINK1Q8N4C8 1332 aaPredicted RBP15.8■□□□□ 0.12
SYNE2-221ENST00000556342 PAK3O75914 559 aaPredicted RBP15.8■□□□□ 0.12
SYNE2-221ENST00000556342 BAG6P46379 1132 aa15.8■□□□□ 0.12
SYNE2-221ENST00000556342 TULP4Q9NRJ4 1543 aa15.79■□□□□ 0.12
SYNE2-221ENST00000556342 WASLO00401 505 aaPredicted RBP15.78■□□□□ 0.12
SYNE2-221ENST00000556342 ALS2Q96Q42 1657 aa15.78■□□□□ 0.12
SYNE2-221ENST00000556342 SPATA31A5Q5VU36 1347 aa15.77■□□□□ 0.12
SYNE2-221ENST00000556342 SPATA31A7Q8IWB4 1347 aa15.77■□□□□ 0.12
SYNE2-221ENST00000556342 LRP5O75197 1615 aa15.77■□□□□ 0.12
SYNE2-221ENST00000556342 COL14A1Q05707 1796 aaKnown RBP15.77■□□□□ 0.11
SYNE2-221ENST00000556342 RAB3GAP2Q9H2M9 1393 aa15.76■□□□□ 0.11
SYNE2-221ENST00000556342 PSDA5PKW4 1024 aaPredicted RBP15.76■□□□□ 0.11
SYNE2-221ENST00000556342 ZNF579Q8NAF0 562 aaKnown RBP15.76■□□□□ 0.11
SYNE2-221ENST00000556342 NGDNQ8NEJ9 315 aaKnown RBP15.76■□□□□ 0.11
SYNE2-221ENST00000556342 KDM2AQ9Y2K7 1162 aa15.76■□□□□ 0.11
SYNE2-221ENST00000556342 PRDM11Q9NQV5 511 aa15.75■□□□□ 0.11
SYNE2-221ENST00000556342 HRCP23327 699 aa15.74■□□□□ 0.11
SYNE2-221ENST00000556342 CLCN6P51797 869 aa15.74■□□□□ 0.11
SYNE2-221ENST00000556342 FAM182BQ5T319 152 aa15.74■□□□□ 0.11
SYNE2-221ENST00000556342 DCAF11Q8TEB1 546 aa15.74■□□□□ 0.11
SYNE2-221ENST00000556342 EN1Q05925 392 aaPredicted RBP15.73■□□□□ 0.11
SYNE2-221ENST00000556342 CRYBG1Q9Y4K1 1723 aa15.72■□□□□ 0.11
SYNE2-221ENST00000556342 DISP2A7MBM2 1401 aa15.72■□□□□ 0.11
SYNE2-221ENST00000556342 GABBR2O75899 941 aa15.72■□□□□ 0.11
SYNE2-221ENST00000556342 STAC3Q96MF2 364 aa15.72■□□□□ 0.11
SYNE2-221ENST00000556342 THSD7AQ9UPZ6 1657 aa15.72■□□□□ 0.11
SYNE2-221ENST00000556342 ATP7BP35670 1465 aa15.71■□□□□ 0.11
SYNE2-221ENST00000556342 KIAA0232Q92628 1395 aa15.71■□□□□ 0.11
SYNE2-221ENST00000556342 SPATA31A1Q5TZJ5 1347 aa15.7■□□□□ 0.1
SYNE2-221ENST00000556342 NUDT16Q96DE0 195 aaKnown RBP15.7■□□□□ 0.1
SYNE2-221ENST00000556342 RGPD1P0DJD0 1748 aa15.7■□□□□ 0.1
SYNE2-221ENST00000556342 CHRNA2Q15822 529 aa15.69■□□□□ 0.1
SYNE2-221ENST00000556342 NUBP1P53384 320 aa15.68■□□□□ 0.1
SYNE2-221ENST00000556342 R3HDM1Q15032 1099 aaKnown RBP15.68■□□□□ 0.1
SYNE2-221ENST00000556342 STRN4Q9NRL3 753 aa15.68■□□□□ 0.1
SYNE2-221ENST00000556342 RASEFQ8IZ41 740 aa15.67■□□□□ 0.1
SYNE2-221ENST00000556342 ARHGEF28Q8N1W1 1705 aaKnown RBP15.66■□□□□ 0.1
SYNE2-221ENST00000556342 POLR3AO14802 1390 aaPredicted RBP15.66■□□□□ 0.1
SYNE2-221ENST00000556342 TRIM37O94972 964 aa15.66■□□□□ 0.1
SYNE2-221ENST00000556342 ZC3H6P61129 1189 aaKnown RBP15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms