RNA–Protein interactions for RNA: ENST00000555405.5

NEK9-205, Transcript of NIMA related kinase 9, humanhuman

TSL 1 (best)

Gene NEK9, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-205ENST00000555405 ADGRL3Q9HAR2 1447 aa13.64□□□□□ -0.23
NEK9-205ENST00000555405 CENPBP07199 599 aaPredicted RBP13.64□□□□□ -0.23
NEK9-205ENST00000555405 CABLES1Q8TDN4 633 aa13.64□□□□□ -0.23
NEK9-205ENST00000555405 CFAP53Q96M91 514 aa13.64□□□□□ -0.23
NEK9-205ENST00000555405 POLR1AO95602 1720 aaPredicted RBP13.64□□□□□ -0.23
NEK9-205ENST00000555405 ATP7BP35670 1465 aa13.63□□□□□ -0.23
NEK9-205ENST00000555405 U2AF1L5P0DN76 240 aaPredicted RBP13.63□□□□□ -0.23
NEK9-205ENST00000555405 U2AF1Q01081 240 aaKnown RBP eCLIP13.63□□□□□ -0.23
NEK9-205ENST00000555405 NINLQ9Y2I6 1382 aa13.62□□□□□ -0.23
NEK9-205ENST00000555405 ADAMTS8Q9UP79 889 aa13.62□□□□□ -0.23
NEK9-205ENST00000555405 PARD3Q8TEW0 1356 aa13.62□□□□□ -0.23
NEK9-205ENST00000555405 AMPHP49418 695 aa13.62□□□□□ -0.23
NEK9-205ENST00000555405 ZC3H6P61129 1189 aaKnown RBP13.62□□□□□ -0.23
NEK9-205ENST00000555405 PNISRQ8TF01 805 aaKnown RBP13.62□□□□□ -0.23
NEK9-205ENST00000555405 CHD2O14647 1828 aaKnown RBP13.61□□□□□ -0.23
NEK9-205ENST00000555405 UBAP1LF5GYI3 381 aa13.6□□□□□ -0.23
NEK9-205ENST00000555405 STRCQ7RTU9 1775 aa13.6□□□□□ -0.23
NEK9-205ENST00000555405 CD163L1Q9NR16 1453 aa13.59□□□□□ -0.23
NEK9-205ENST00000555405 BRINP3Q76B58 766 aa13.59□□□□□ -0.23
NEK9-205ENST00000555405 HMOX1P09601 288 aa13.58□□□□□ -0.23
NEK9-205ENST00000555405 RRP7AQ9Y3A4 280 aaKnown RBP13.58□□□□□ -0.23
NEK9-205ENST00000555405 POLKQ9UBT6 870 aa13.58□□□□□ -0.24
NEK9-205ENST00000555405 XRN1Q8IZH2 1706 aaKnown RBP13.58□□□□□ -0.24
NEK9-205ENST00000555405 NKTRP30414 1462 aaKnown RBP13.58□□□□□ -0.24
NEK9-205ENST00000555405 EDC4Q6P2E9 1401 aaKnown RBP13.57□□□□□ -0.24
NEK9-205ENST00000555405 BRD4O60885 1362 aaPredicted RBP13.57□□□□□ -0.24
NEK9-205ENST00000555405 USP6P35125 1406 aa13.57□□□□□ -0.24
NEK9-205ENST00000555405 MYOM1P52179 1685 aa13.57□□□□□ -0.24
NEK9-205ENST00000555405 C1orf167Q5SNV9 1468 aa13.57□□□□□ -0.24
NEK9-205ENST00000555405 NUDCQ9Y266 331 aa13.57□□□□□ -0.24
NEK9-205ENST00000555405 CPSF1Q10570 1443 aaKnown RBP13.56□□□□□ -0.24
NEK9-205ENST00000555405 HSP90AB2PQ58FF8 381 aa13.56□□□□□ -0.24
NEK9-205ENST00000555405 RGPD8O14715 1765 aaPredicted RBP13.56□□□□□ -0.24
NEK9-205ENST00000555405 DIAPH1O60610 1272 aaKnown RBP13.55□□□□□ -0.24
NEK9-205ENST00000555405 KNDC1Q76NI1 1749 aa13.55□□□□□ -0.24
NEK9-205ENST00000555405 LRRC7Q96NW7 1537 aa13.55□□□□□ -0.24
NEK9-205ENST00000555405 NPHP3Q7Z494 1330 aa13.55□□□□□ -0.24
NEK9-205ENST00000555405 CHRNA2Q15822 529 aa13.55□□□□□ -0.24
NEK9-205ENST00000555405 APAF1O14727 1248 aa13.54□□□□□ -0.24
NEK9-205ENST00000555405 NUTM2BA6NNL0 878 aaPredicted RBP13.54□□□□□ -0.24
NEK9-205ENST00000555405 NUTM2EB1AL46 878 aaPredicted RBP13.54□□□□□ -0.24
NEK9-205ENST00000555405 NUTM2AQ8IVF1 878 aaPredicted RBP13.54□□□□□ -0.24
NEK9-205ENST00000555405 ANKARQ7Z5J8 1434 aa13.53□□□□□ -0.24
NEK9-205ENST00000555405 TTC21AQ8NDW8 1320 aa13.53□□□□□ -0.24
NEK9-205ENST00000555405 NALCNQ8IZF0 1738 aa13.53□□□□□ -0.24
NEK9-205ENST00000555405 TOM1O60784 492 aa13.53□□□□□ -0.24
NEK9-205ENST00000555405 STRCP1A6NGW2 1772 aa13.53□□□□□ -0.24
NEK9-205ENST00000555405 MAP3K19Q56UN5 1328 aa13.52□□□□□ -0.24
NEK9-205ENST00000555405 GCP02774 474 aa13.52□□□□□ -0.25
NEK9-205ENST00000555405 NPC1L1Q9UHC9 1359 aa13.52□□□□□ -0.25
NEK9-205ENST00000555405 MST1RQ04912 1400 aa13.52□□□□□ -0.25
NEK9-205ENST00000555405 NEFMP07197 916 aa13.51□□□□□ -0.25
NEK9-205ENST00000555405 CSB-PGBD3P0DP91 1061 aa13.51□□□□□ -0.25
NEK9-205ENST00000555405 USHBP1Q8N6Y0 703 aa13.51□□□□□ -0.25
NEK9-205ENST00000555405 NSD2O96028 1365 aa13.51□□□□□ -0.25
NEK9-205ENST00000555405 POLR3AO14802 1390 aaPredicted RBP13.51□□□□□ -0.25
NEK9-205ENST00000555405 CDC42BPGQ6DT37 1551 aa13.5□□□□□ -0.25
NEK9-205ENST00000555405 ADAMTS2O95450 1211 aa13.49□□□□□ -0.25
NEK9-205ENST00000555405 SULT6B1Q6IMI4 303 aa13.49□□□□□ -0.25
NEK9-205ENST00000555405 MAPK8IP3Q9UPT6 1336 aa13.48□□□□□ -0.25
NEK9-205ENST00000555405 USP35Q9P2H5 1018 aa13.48□□□□□ -0.25
NEK9-205ENST00000555405 USP32Q8NFA0 1604 aa13.48□□□□□ -0.25
NEK9-205ENST00000555405 PRKAR2BP31323 418 aa13.48□□□□□ -0.25
NEK9-205ENST00000555405 AEBP1Q8IUX7 1158 aa13.48□□□□□ -0.25
NEK9-205ENST00000555405 PRDM11Q9NQV5 511 aa13.47□□□□□ -0.25
NEK9-205ENST00000555405 STRN4Q9NRL3 753 aa13.47□□□□□ -0.25
NEK9-205ENST00000555405 ADGRB2O60241 1585 aa13.47□□□□□ -0.25
NEK9-205ENST00000555405 EIF4A2Q14240 407 aaKnown RBP13.47□□□□□ -0.25
NEK9-205ENST00000555405 LRRC59Q96AG4 307 aaKnown RBP13.47□□□□□ -0.25
NEK9-205ENST00000555405 NWD1Q149M9 1564 aa13.46□□□□□ -0.25
NEK9-205ENST00000555405 TCP11L2Q8N4U5 519 aa13.46□□□□□ -0.25
NEK9-205ENST00000555405 KCNH5Q8NCM2 988 aa13.46□□□□□ -0.25
NEK9-205ENST00000555405 LAS1LQ9Y4W2 734 aaKnown RBP13.46□□□□□ -0.25
NEK9-205ENST00000555405 NLRP2Q9NX02 1062 aa13.46□□□□□ -0.26
NEK9-205ENST00000555405 CERKQ8TCT0 537 aa13.45□□□□□ -0.26
NEK9-205ENST00000555405 CDCA7LQ96GN5 454 aa13.45□□□□□ -0.26
NEK9-205ENST00000555405 FMN2Q9NZ56 1722 aa13.45□□□□□ -0.26
NEK9-205ENST00000555405 HOXC9P31274 260 aa13.45□□□□□ -0.26
NEK9-205ENST00000555405 SPATA31A3Q5VYP0 1347 aa13.44□□□□□ -0.26
NEK9-205ENST00000555405 NCOA3Q9Y6Q9 1424 aa13.43□□□□□ -0.26
NEK9-205ENST00000555405 EVA1CP58658 441 aa13.43□□□□□ -0.26
NEK9-205ENST00000555405 RUNDC1Q96C34 613 aa13.43□□□□□ -0.26
NEK9-205ENST00000555405 ITSN1Q15811 1721 aa13.43□□□□□ -0.26
NEK9-205ENST00000555405 IL13P35225 146 aa13.43□□□□□ -0.26
NEK9-205ENST00000555405 AXIN2Q9Y2T1 843 aa13.43□□□□□ -0.26
NEK9-205ENST00000555405 IRX6P78412 446 aaPredicted RBP13.42□□□□□ -0.26
NEK9-205ENST00000555405 PHACTR3Q96KR7 559 aa13.42□□□□□ -0.26
NEK9-205ENST00000555405 EYA1Q99502 592 aa13.42□□□□□ -0.26
NEK9-205ENST00000555405 SSH2Q76I76 1423 aa13.42□□□□□ -0.26
NEK9-205ENST00000555405 DCCP43146 1447 aa13.41□□□□□ -0.26
NEK9-205ENST00000555405 RIPK4P57078 832 aa13.41□□□□□ -0.26
NEK9-205ENST00000555405 ANKRD24Q8TF21 1146 aa13.41□□□□□ -0.26
NEK9-205ENST00000555405 THUMPD2Q9BTF0 503 aaKnown RBP13.41□□□□□ -0.26
NEK9-205ENST00000555405 CCDC9Q9Y3X0 531 aaKnown RBP13.41□□□□□ -0.26
NEK9-205ENST00000555405 OVOS2A0A0J9YW53 1432 aa13.41□□□□□ -0.26
NEK9-205ENST00000555405 OVOS2Q6IE36 1432 aa13.41□□□□□ -0.26
NEK9-205ENST00000555405 DCTN1Q14203 1278 aa13.4□□□□□ -0.26
NEK9-205ENST00000555405 ARHGEF25Q86VW2 580 aa13.4□□□□□ -0.26
NEK9-205ENST00000555405 IP6K1Q92551 441 aa13.4□□□□□ -0.26
NEK9-205ENST00000555405 KIAA0232Q92628 1395 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms