RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 ATP6V1AP38606 617 aa7.6□□□□□ -1.19
VTI1B-202ENST00000553619 KANK4Q5T7N3 995 aaPredicted RBP7.6□□□□□ -1.19
VTI1B-202ENST00000553619 SLC27A5Q9Y2P5 690 aa7.6□□□□□ -1.19
VTI1B-202ENST00000553619 EPRSP07814 1512 aaKnown RBP7.6□□□□□ -1.19
VTI1B-202ENST00000553619 UHRF1BP1LA0JNW5 1464 aa7.6□□□□□ -1.19
VTI1B-202ENST00000553619 FAM160A2Q8N612 972 aaPredicted RBP7.59□□□□□ -1.19
VTI1B-202ENST00000553619 PRDM9Q9NQV7 894 aa7.59□□□□□ -1.19
VTI1B-202ENST00000553619 PLB1Q6P1J6 1458 aa7.59□□□□□ -1.19
VTI1B-202ENST00000553619 LRRC9Q6ZRR7 1453 aa7.59□□□□□ -1.19
VTI1B-202ENST00000553619 ERCC6L2Q5T890 1561 aa7.59□□□□□ -1.2
VTI1B-202ENST00000553619 PKDCCQ504Y2 493 aa7.58□□□□□ -1.2
VTI1B-202ENST00000553619 FCF1Q9Y324 198 aaKnown RBP7.58□□□□□ -1.2
VTI1B-202ENST00000553619 ABCC2Q92887 1545 aa7.57□□□□□ -1.2
VTI1B-202ENST00000553619 CFAP43Q8NDM7 1665 aa7.57□□□□□ -1.2
VTI1B-202ENST00000553619 ATP10BO94823 1461 aa7.57□□□□□ -1.2
VTI1B-202ENST00000553619 NUP153P49790 1475 aaKnown RBP7.57□□□□□ -1.2
VTI1B-202ENST00000553619 ARID3CA6NKF2 412 aa7.57□□□□□ -1.2
VTI1B-202ENST00000553619 FMNL1O95466 1100 aaPredicted RBP7.57□□□□□ -1.2
VTI1B-202ENST00000553619 MYT1Q01538 1121 aa7.57□□□□□ -1.2
VTI1B-202ENST00000553619 MAP2K5Q13163 448 aa7.57□□□□□ -1.2
VTI1B-202ENST00000553619 ZNF787Q6DD87 383 aa7.57□□□□□ -1.2
VTI1B-202ENST00000553619 CYB5RLQ6IPT4 315 aa7.57□□□□□ -1.2
VTI1B-202ENST00000553619 RNF19BQ6ZMZ0 732 aa7.57□□□□□ -1.2
VTI1B-202ENST00000553619 ARHGEF11O15085 1522 aa7.57□□□□□ -1.2
VTI1B-202ENST00000553619 FAM187AA6NFU0 413 aa7.56□□□□□ -1.2
VTI1B-202ENST00000553619 DGAT1O75907 488 aa7.56□□□□□ -1.2
VTI1B-202ENST00000553619 PKD2L1Q9P0L9 805 aa7.56□□□□□ -1.2
VTI1B-202ENST00000553619 CD46P15529 392 aa7.55□□□□□ -1.2
VTI1B-202ENST00000553619 FOXC1Q12948 553 aa7.55□□□□□ -1.2
VTI1B-202ENST00000553619 BRICD5Q6PL45 260 aa7.55□□□□□ -1.2
VTI1B-202ENST00000553619 EHBP1L1Q8N3D4 1523 aa7.55□□□□□ -1.2
VTI1B-202ENST00000553619 SUPT6HQ7KZ85 1726 aaKnown RBP7.55□□□□□ -1.2
VTI1B-202ENST00000553619 LRRIQ1Q96JM4 1722 aa7.55□□□□□ -1.2
VTI1B-202ENST00000553619 TROQ12816 1431 aaPredicted RBP7.54□□□□□ -1.2
VTI1B-202ENST00000553619 CDK13Q14004 1512 aaKnown RBP7.54□□□□□ -1.2
VTI1B-202ENST00000553619 KDM5BQ9UGL1 1544 aa7.54□□□□□ -1.2
VTI1B-202ENST00000553619 PCGF6Q9BYE7 350 aa7.54□□□□□ -1.2
VTI1B-202ENST00000553619 SALL2Q9Y467 1007 aaPredicted RBP7.54□□□□□ -1.2
VTI1B-202ENST00000553619 RIMBP3CA6NJZ7 1639 aa7.53□□□□□ -1.2
VTI1B-202ENST00000553619 RIMBP3BA6NNM3 1639 aa7.53□□□□□ -1.2
VTI1B-202ENST00000553619 RIMBP3Q9UFD9 1639 aa7.53□□□□□ -1.2
VTI1B-202ENST00000553619 IRF6O14896 467 aa7.53□□□□□ -1.2
VTI1B-202ENST00000553619 RPIAP49247 311 aa7.53□□□□□ -1.2
VTI1B-202ENST00000553619 MDM2Q00987 491 aaPredicted RBP7.53□□□□□ -1.2
VTI1B-202ENST00000553619 CCNB3Q8WWL7 1395 aa7.53□□□□□ -1.2
VTI1B-202ENST00000553619 MSS51Q4VC12 460 aa7.52□□□□□ -1.21
VTI1B-202ENST00000553619 HLA-CQ95604 372 aa7.52□□□□□ -1.21
VTI1B-202ENST00000553619 CCDC102AQ96A19 550 aa7.52□□□□□ -1.21
VTI1B-202ENST00000553619 NCOA2Q15596 1464 aa7.51□□□□□ -1.21
VTI1B-202ENST00000553619 ST8SIA5O15466 376 aa7.51□□□□□ -1.21
VTI1B-202ENST00000553619 GRIPAP1Q4V328 841 aa7.51□□□□□ -1.21
VTI1B-202ENST00000553619 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.5□□□□□ -1.21
VTI1B-202ENST00000553619 ZCCHC11Q5TAX3 1644 aaKnown RBP7.5□□□□□ -1.21
VTI1B-202ENST00000553619 ADCY10Q96PN6 1610 aa7.5□□□□□ -1.21
VTI1B-202ENST00000553619 POTECB2RU33 542 aa7.5□□□□□ -1.21
VTI1B-202ENST00000553619 KDM4AO75164 1064 aa7.5□□□□□ -1.21
VTI1B-202ENST00000553619 FAM50AQ14320 339 aaKnown RBP7.5□□□□□ -1.21
VTI1B-202ENST00000553619 LMOD2Q6P5Q4 547 aa7.5□□□□□ -1.21
VTI1B-202ENST00000553619 CFDP1Q9UEE9 299 aaPredicted RBP7.5□□□□□ -1.21
VTI1B-202ENST00000553619 MYOM3Q5VTT5 1437 aa7.5□□□□□ -1.21
VTI1B-202ENST00000553619 MIA2Q96PC5 1412 aa7.5□□□□□ -1.21
VTI1B-202ENST00000553619 MINK1Q8N4C8 1332 aaPredicted RBP7.5□□□□□ -1.21
VTI1B-202ENST00000553619 Q3C1V9 767 aa7.49□□□□□ -1.21
VTI1B-202ENST00000553619 RRBP1Q9P2E9 1410 aaKnown RBP7.49□□□□□ -1.21
VTI1B-202ENST00000553619 KIF14Q15058 1648 aa7.49□□□□□ -1.21
VTI1B-202ENST00000553619 PHLDB1Q86UU1 1377 aa7.48□□□□□ -1.21
VTI1B-202ENST00000553619 MAGI3Q5TCQ9 1506 aa7.48□□□□□ -1.21
VTI1B-202ENST00000553619 CD2BP2O95400 341 aaKnown RBP7.48□□□□□ -1.21
VTI1B-202ENST00000553619 EFCAB2Q5VUJ9 269 aa7.48□□□□□ -1.21
VTI1B-202ENST00000553619 KRI1Q8N9T8 703 aaKnown RBP7.48□□□□□ -1.21
VTI1B-202ENST00000553619 ZNF775Q96BV0 537 aaPredicted RBP7.48□□□□□ -1.21
VTI1B-202ENST00000553619 AAASQ9NRG9 546 aa7.48□□□□□ -1.21
VTI1B-202ENST00000553619 TOR4AQ9NXH8 423 aa7.48□□□□□ -1.21
VTI1B-202ENST00000553619 FGD6Q6ZV73 1430 aa7.47□□□□□ -1.21
VTI1B-202ENST00000553619 ASXL2Q76L83 1435 aa7.47□□□□□ -1.21
VTI1B-202ENST00000553619 MMP16P51512 607 aa7.47□□□□□ -1.21
VTI1B-202ENST00000553619 GUCA2AQ02747 115 aa7.47□□□□□ -1.21
VTI1B-202ENST00000553619 WDR7Q9Y4E6 1490 aa7.47□□□□□ -1.21
VTI1B-202ENST00000553619 ITSN2Q9NZM3 1697 aa7.47□□□□□ -1.21
VTI1B-202ENST00000553619 ACIN1Q9UKV3 1341 aaKnown RBP7.47□□□□□ -1.21
VTI1B-202ENST00000553619 HOXA2O43364 376 aa7.46□□□□□ -1.22
VTI1B-202ENST00000553619 DXOO77932 396 aaKnown RBP7.46□□□□□ -1.22
VTI1B-202ENST00000553619 CYP4X1Q8N118 509 aa7.46□□□□□ -1.22
VTI1B-202ENST00000553619 USB1Q9BQ65 265 aaKnown RBP7.46□□□□□ -1.22
VTI1B-202ENST00000553619 FAM217BQ9NTX9 383 aaPredicted RBP7.46□□□□□ -1.22
VTI1B-202ENST00000553619 ZNF777Q9ULD5 760 aaPredicted RBP7.46□□□□□ -1.22
VTI1B-202ENST00000553619 ZBTB24O43167 697 aaPredicted RBP7.45□□□□□ -1.22
VTI1B-202ENST00000553619 TSPY4P0CV99 314 aa7.45□□□□□ -1.22
VTI1B-202ENST00000553619 TSPY10P0CW01 314 aa7.45□□□□□ -1.22
VTI1B-202ENST00000553619 USP46P62068 366 aa7.45□□□□□ -1.22
VTI1B-202ENST00000553619 TRIM32Q13049 653 aa7.45□□□□□ -1.22
VTI1B-202ENST00000553619 GPCPD1Q9NPB8 672 aa7.45□□□□□ -1.22
VTI1B-202ENST00000553619 GPATCH8Q9UKJ3 1502 aaKnown RBP7.45□□□□□ -1.22
VTI1B-202ENST00000553619 PLCH2O75038 1416 aa7.44□□□□□ -1.22
VTI1B-202ENST00000553619 ABCC10Q5T3U5 1492 aa7.44□□□□□ -1.22
VTI1B-202ENST00000553619 MAPKBP1O60336 1514 aa7.44□□□□□ -1.22
VTI1B-202ENST00000553619 CLCN1P35523 988 aa7.44□□□□□ -1.22
VTI1B-202ENST00000553619 ITGAEP38570 1179 aa7.44□□□□□ -1.22
VTI1B-202ENST00000553619 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.44□□□□□ -1.22
VTI1B-202ENST00000553619 DACH1Q9UI36 760 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms