RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 PTPRTO14522 1441 aa8.38□□□□□ -1.07
VIPAS39-204ENST00000553576 CD109Q6YHK3 1445 aa8.38□□□□□ -1.07
VIPAS39-204ENST00000553576 CEP152O94986 1710 aa8.38□□□□□ -1.07
VIPAS39-204ENST00000553576 SPHKAPQ2M3C7 1700 aa8.38□□□□□ -1.07
VIPAS39-204ENST00000553576 C11orf95C9JLR9 678 aaPredicted RBP8.38□□□□□ -1.07
VIPAS39-204ENST00000553576 KIAA1468Q9P260 1216 aa8.38□□□□□ -1.07
VIPAS39-204ENST00000553576 GLI2P10070 1586 aa8.38□□□□□ -1.07
VIPAS39-204ENST00000553576 NEO1Q92859 1461 aa8.38□□□□□ -1.07
VIPAS39-204ENST00000553576 MLH3Q9UHC1 1453 aa8.38□□□□□ -1.07
VIPAS39-204ENST00000553576 CHGAP10645 457 aaKnown RBP8.37□□□□□ -1.07
VIPAS39-204ENST00000553576 MAP3K9P80192 1104 aa8.37□□□□□ -1.07
VIPAS39-204ENST00000553576 DNAJC5Q9H3Z4 198 aa8.37□□□□□ -1.07
VIPAS39-204ENST00000553576 RYDENQ9NUL5 291 aaKnown RBP8.37□□□□□ -1.07
VIPAS39-204ENST00000553576 CNTLNQ9NXG0 1405 aa8.37□□□□□ -1.07
VIPAS39-204ENST00000553576 GPRASP1Q5JY77 1395 aa8.36□□□□□ -1.07
VIPAS39-204ENST00000553576 RNF17Q9BXT8 1623 aaKnown RBP8.36□□□□□ -1.07
VIPAS39-204ENST00000553576 PRDM15P57071 1507 aaPredicted RBP8.36□□□□□ -1.07
VIPAS39-204ENST00000553576 LMTK2Q8IWU2 1503 aa8.36□□□□□ -1.07
VIPAS39-204ENST00000553576 DCAF11Q8TEB1 546 aa8.36□□□□□ -1.07
VIPAS39-204ENST00000553576 FBXW7Q969H0 707 aa8.36□□□□□ -1.07
VIPAS39-204ENST00000553576 YTHDC1Q96MU7 727 aaKnown RBP8.36□□□□□ -1.07
VIPAS39-204ENST00000553576 PRAG1Q86YV5 1406 aa8.36□□□□□ -1.07
VIPAS39-204ENST00000553576 MROH1Q8NDA8 1641 aa8.36□□□□□ -1.07
VIPAS39-204ENST00000553576 MAP3K4Q9Y6R4 1608 aa8.36□□□□□ -1.07
VIPAS39-204ENST00000553576 KANK1Q14678 1352 aa8.35□□□□□ -1.07
VIPAS39-204ENST00000553576 USP47Q96K76 1375 aa8.35□□□□□ -1.07
VIPAS39-204ENST00000553576 TRPM2O94759 1503 aa8.35□□□□□ -1.07
VIPAS39-204ENST00000553576 TYW1BQ6NUM6 668 aa8.35□□□□□ -1.07
VIPAS39-204ENST00000553576 SEPT9Q9UHD8 586 aaPredicted RBP8.35□□□□□ -1.07
VIPAS39-204ENST00000553576 KIF7Q2M1P5 1343 aa8.34□□□□□ -1.07
VIPAS39-204ENST00000553576 KIF1BO60333 1816 aa8.34□□□□□ -1.07
VIPAS39-204ENST00000553576 A2MP01023 1474 aa8.34□□□□□ -1.07
VIPAS39-204ENST00000553576 ONECUT3O60422 494 aaPredicted RBP8.34□□□□□ -1.07
VIPAS39-204ENST00000553576 DDX27Q96GQ7 796 aaKnown RBP8.34□□□□□ -1.07
VIPAS39-204ENST00000553576 EMILIN3Q9NT22 766 aa8.34□□□□□ -1.07
VIPAS39-204ENST00000553576 TSR3Q9UJK0 312 aaKnown RBP8.34□□□□□ -1.07
VIPAS39-204ENST00000553576 GTF3C3Q9Y5Q9 886 aa8.34□□□□□ -1.07
VIPAS39-204ENST00000553576 POGZQ7Z3K3 1410 aa8.34□□□□□ -1.07
VIPAS39-204ENST00000553576 KIAA1210Q9ULL0 1709 aa8.34□□□□□ -1.07
VIPAS39-204ENST00000553576 ROCK2O75116 1388 aaKnown RBP8.34□□□□□ -1.07
VIPAS39-204ENST00000553576 RIMBP3CA6NJZ7 1639 aa8.33□□□□□ -1.08
VIPAS39-204ENST00000553576 RIMBP3BA6NNM3 1639 aa8.33□□□□□ -1.08
VIPAS39-204ENST00000553576 RIMBP3Q9UFD9 1639 aa8.33□□□□□ -1.08
VIPAS39-204ENST00000553576 PHF14O94880 888 aa8.33□□□□□ -1.08
VIPAS39-204ENST00000553576 RICTORQ6R327 1708 aa8.33□□□□□ -1.08
VIPAS39-204ENST00000553576 LARP6Q9BRS8 491 aaKnown RBP8.33□□□□□ -1.08
VIPAS39-204ENST00000553576 HECW2Q9P2P5 1572 aa8.33□□□□□ -1.08
VIPAS39-204ENST00000553576 HPS5Q9UPZ3 1129 aa8.33□□□□□ -1.08
VIPAS39-204ENST00000553576 NRG2O14511 850 aaPredicted RBP8.32□□□□□ -1.08
VIPAS39-204ENST00000553576 KIF3BO15066 747 aa8.32□□□□□ -1.08
VIPAS39-204ENST00000553576 FAM98CQ17RN3 349 aaKnown RBP8.32□□□□□ -1.08
VIPAS39-204ENST00000553576 CARD11Q9BXL7 1154 aa8.32□□□□□ -1.08
VIPAS39-204ENST00000553576 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.32□□□□□ -1.08
VIPAS39-204ENST00000553576 KDM2AQ9Y2K7 1162 aa8.32□□□□□ -1.08
VIPAS39-204ENST00000553576 CLTCL1P53675 1640 aa8.32□□□□□ -1.08
VIPAS39-204ENST00000553576 MFSD10Q14728 455 aa8.31□□□□□ -1.08
VIPAS39-204ENST00000553576 LRCH3Q96II8 777 aa8.31□□□□□ -1.08
VIPAS39-204ENST00000553576 PRKRIP1Q9H875 184 aaPredicted RBP8.31□□□□□ -1.08
VIPAS39-204ENST00000553576 EFCAB6Q5THR3 1501 aa8.3□□□□□ -1.08
VIPAS39-204ENST00000553576 IFT172Q9UG01 1749 aa8.3□□□□□ -1.08
VIPAS39-204ENST00000553576 TRIM6-TRIM34B2RNG4 842 aa8.3□□□□□ -1.08
VIPAS39-204ENST00000553576 PRKD2Q9BZL6 878 aa8.3□□□□□ -1.08
VIPAS39-204ENST00000553576 CFAP65Q6ZU64 1925 aaKnown RBP8.3□□□□□ -1.08
VIPAS39-204ENST00000553576 FRMPD1Q5SYB0 1578 aa8.3□□□□□ -1.08
VIPAS39-204ENST00000553576 MADDQ8WXG6 1647 aa8.29□□□□□ -1.08
VIPAS39-204ENST00000553576 ST20-MTHFSA0A0A6YYL1 179 aa8.29□□□□□ -1.08
VIPAS39-204ENST00000553576 RGL3Q3MIN7 710 aa8.29□□□□□ -1.08
VIPAS39-204ENST00000553576 ZNF326Q5BKZ1 582 aaKnown RBP8.29□□□□□ -1.08
VIPAS39-204ENST00000553576 C6orf132Q5T0Z8 1188 aa8.29□□□□□ -1.08
VIPAS39-204ENST00000553576 PPRC1Q5VV67 1664 aaKnown RBP8.29□□□□□ -1.08
VIPAS39-204ENST00000553576 ABCA6Q8N139 1617 aa8.29□□□□□ -1.08
VIPAS39-204ENST00000553576 IQGAP1P46940 1657 aa8.28□□□□□ -1.08
VIPAS39-204ENST00000553576 KTN1Q86UP2 1357 aaKnown RBP8.27□□□□□ -1.09
VIPAS39-204ENST00000553576 NBPF1Q3BBV0 1214 aa8.27□□□□□ -1.09
VIPAS39-204ENST00000553576 CYB5RLQ6IPT4 315 aa8.27□□□□□ -1.09
VIPAS39-204ENST00000553576 ZC3H13Q5T200 1668 aaKnown RBP8.27□□□□□ -1.09
VIPAS39-204ENST00000553576 DIP2BQ9P265 1576 aa8.27□□□□□ -1.09
VIPAS39-204ENST00000553576 DIP2CQ9Y2E4 1556 aa8.27□□□□□ -1.09
VIPAS39-204ENST00000553576 ZMYM4Q5VZL5 1548 aa8.26□□□□□ -1.09
VIPAS39-204ENST00000553576 SLC24A1O60721 1099 aa8.26□□□□□ -1.09
VIPAS39-204ENST00000553576 TJAP1Q5JTD0 557 aa8.26□□□□□ -1.09
VIPAS39-204ENST00000553576 TESK2Q96S53 571 aa8.26□□□□□ -1.09
VIPAS39-204ENST00000553576 ARHGAP31Q2M1Z3 1444 aa8.26□□□□□ -1.09
VIPAS39-204ENST00000553576 WASHC2CQ9Y4E1 1318 aa8.26□□□□□ -1.09
VIPAS39-204ENST00000553576 MYOM2P54296 1465 aa8.26□□□□□ -1.09
VIPAS39-204ENST00000553576 PPLO60437 1756 aa8.25□□□□□ -1.09
VIPAS39-204ENST00000553576 ZNF787Q6DD87 383 aa8.25□□□□□ -1.09
VIPAS39-204ENST00000553576 EPAS1Q99814 870 aa8.25□□□□□ -1.09
VIPAS39-204ENST00000553576 V9GY48 417 aaPredicted RBP8.25□□□□□ -1.09
VIPAS39-204ENST00000553576 REREQ9P2R6 1566 aa8.25□□□□□ -1.09
VIPAS39-204ENST00000553576 NRXN1Q9ULB1 1477 aa8.25□□□□□ -1.09
VIPAS39-204ENST00000553576 CAMSAP1Q5T5Y3 1602 aa8.25□□□□□ -1.09
VIPAS39-204ENST00000553576 ABCC3O15438 1527 aa8.24□□□□□ -1.09
VIPAS39-204ENST00000553576 NOS1P29475 1434 aa8.24□□□□□ -1.09
VIPAS39-204ENST00000553576 AMER1Q5JTC6 1135 aaPredicted RBP8.24□□□□□ -1.09
VIPAS39-204ENST00000553576 PIK3C2BO00750 1634 aa8.24□□□□□ -1.09
VIPAS39-204ENST00000553576 COL17A1Q9UMD9 1497 aaPredicted RBP8.24□□□□□ -1.09
VIPAS39-204ENST00000553576 RPGRIP1LQ68CZ1 1315 aa8.24□□□□□ -1.09
VIPAS39-204ENST00000553576 MROH2AA6NES4 1674 aa8.24□□□□□ -1.09
VIPAS39-204ENST00000553576 NPATQ14207 1427 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms