RNA–Protein interactions for RNA: ENST00000552433.1

LETMD1-233, Transcript of LETM1 domain containing 1, human

TSL 2

Gene LETMD1, Length 727 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LETMD1-233	ENST00000552433	KDM4C	Q9H3R0	1056 aa		11.97	□□□□□ -0.49
LETMD1-233	ENST00000552433	LILRB3	O75022	631 aa		11.96	□□□□□ -0.49
LETMD1-233	ENST00000552433	CLK2	P49760	499 aa	Known RBP	11.96	□□□□□ -0.49
LETMD1-233	ENST00000552433	HPS1	Q92902	700 aa		11.96	□□□□□ -0.49
LETMD1-233	ENST00000552433	MAP10	Q9P2G4	905 aa		11.96	□□□□□ -0.49
LETMD1-233	ENST00000552433	SIAH2	O43255	324 aa		11.95	□□□□□ -0.5
LETMD1-233	ENST00000552433	FAM117A	Q9C073	453 aa		11.95	□□□□□ -0.5
LETMD1-233	ENST00000552433	RSPH6A	Q9H0K4	717 aa		11.95	□□□□□ -0.5
LETMD1-233	ENST00000552433	CRIPAK	Q8N1N5	446 aa		11.94	□□□□□ -0.5
LETMD1-233	ENST00000552433	CTC1	Q2NKJ3	1217 aa		11.92	□□□□□ -0.5
LETMD1-233	ENST00000552433	TUSC1	Q2TAM9	212 aa		11.92	□□□□□ -0.5
LETMD1-233	ENST00000552433	ZNF511	Q8NB15	262 aa		11.92	□□□□□ -0.5
LETMD1-233	ENST00000552433	F12	P00748	615 aa	Predicted RBP	11.91	□□□□□ -0.5
LETMD1-233	ENST00000552433	ZNF775	Q96BV0	537 aa	Predicted RBP	11.91	□□□□□ -0.5
LETMD1-233	ENST00000552433	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.91	□□□□□ -0.5
LETMD1-233	ENST00000552433	SMCP	P49901	116 aa	Predicted RBP	11.9	□□□□□ -0.5
LETMD1-233	ENST00000552433	PROCA1	Q8NCQ7	364 aa	Predicted RBP	11.9	□□□□□ -0.5
LETMD1-233	ENST00000552433	GMPR2	Q9P2T1	348 aa	Known RBP	11.9	□□□□□ -0.5
LETMD1-233	ENST00000552433	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.88	□□□□□ -0.51
LETMD1-233	ENST00000552433	FOXJ1	Q92949	421 aa		11.88	□□□□□ -0.51
LETMD1-233	ENST00000552433	PLEKHG3	A1L390	1219 aa		11.87	□□□□□ -0.51
LETMD1-233	ENST00000552433	TLL2	Q9Y6L7	1015 aa		11.87	□□□□□ -0.51
LETMD1-233	ENST00000552433	WASF2	Q9Y6W5	498 aa		11.87	□□□□□ -0.51
LETMD1-233	ENST00000552433	SKIV2L	Q15477	1246 aa	Known RBP	11.86	□□□□□ -0.51
LETMD1-233	ENST00000552433	CTDSPL2	Q05D32	466 aa		11.85	□□□□□ -0.51
LETMD1-233	ENST00000552433	HELB	Q8NG08	1087 aa	Predicted RBP	11.85	□□□□□ -0.51
LETMD1-233	ENST00000552433	DDRGK1	Q96HY6	314 aa		11.85	□□□□□ -0.51
LETMD1-233	ENST00000552433	C11orf95	C9JLR9	678 aa	Predicted RBP	11.84	□□□□□ -0.51
LETMD1-233	ENST00000552433	VARS	P26640	1264 aa	Known RBP	11.84	□□□□□ -0.51
LETMD1-233	ENST00000552433	ATP13A2	Q9NQ11	1180 aa		11.84	□□□□□ -0.51
LETMD1-233	ENST00000552433	AGER	Q15109	404 aa		11.83	□□□□□ -0.52
LETMD1-233	ENST00000552433	SH3D19	Q5HYK7	790 aa		11.82	□□□□□ -0.52
LETMD1-233	ENST00000552433	ARID5B	Q14865	1188 aa		11.8	□□□□□ -0.52
LETMD1-233	ENST00000552433	C4orf48	Q5BLP8	95 aa		11.8	□□□□□ -0.52
LETMD1-233	ENST00000552433	FAM174A	Q8TBP5	190 aa		11.79	□□□□□ -0.52
LETMD1-233	ENST00000552433	LRRN4	Q8WUT4	740 aa		11.79	□□□□□ -0.52
LETMD1-233	ENST00000552433	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	11.79	□□□□□ -0.52
LETMD1-233	ENST00000552433	NEUROD2	Q15784	382 aa		11.78	□□□□□ -0.52
LETMD1-233	ENST00000552433	CAPN5	O15484	640 aa	Predicted RBP	11.77	□□□□□ -0.53
LETMD1-233	ENST00000552433	SNRPB	P14678	240 aa	Known RBP	11.77	□□□□□ -0.53
LETMD1-233	ENST00000552433	NNT	Q13423	1086 aa		11.76	□□□□□ -0.53
LETMD1-233	ENST00000552433	IL27	Q8NEV9	243 aa		11.76	□□□□□ -0.53
LETMD1-233	ENST00000552433	AP1G2	O75843	785 aa		11.75	□□□□□ -0.53
LETMD1-233	ENST00000552433	BMP1	P13497	986 aa		11.75	□□□□□ -0.53
LETMD1-233	ENST00000552433	BPHL	Q86WA6	291 aa	Predicted RBP	11.75	□□□□□ -0.53
LETMD1-233	ENST00000552433	ARMC2	Q8NEN0	867 aa		11.75	□□□□□ -0.53
LETMD1-233	ENST00000552433	MPND	Q8N594	471 aa		11.74	□□□□□ -0.53
LETMD1-233	ENST00000552433	MAGEB6P1	A0A0J9YX57	407 aa		11.73	□□□□□ -0.53
LETMD1-233	ENST00000552433	NR6A1	Q15406	480 aa		11.73	□□□□□ -0.53
LETMD1-233	ENST00000552433	PPP2R2D	Q66LE6	453 aa		11.73	□□□□□ -0.53
LETMD1-233	ENST00000552433	ADH1C	P00326	375 aa		11.72	□□□□□ -0.53
LETMD1-233	ENST00000552433	TRIM46	Q7Z4K8	759 aa		11.72	□□□□□ -0.53
LETMD1-233	ENST00000552433	CDK15	Q96Q40	435 aa		11.72	□□□□□ -0.53
LETMD1-233	ENST00000552433	SENP2	Q9HC62	589 aa		11.72	□□□□□ -0.53
LETMD1-233	ENST00000552433	NBPF14	Q5TI25	921 aa		11.71	□□□□□ -0.53
LETMD1-233	ENST00000552433	TRIM47	Q96LD4	638 aa		11.71	□□□□□ -0.53
LETMD1-233	ENST00000552433	CARD14	Q9BXL6	1004 aa		11.71	□□□□□ -0.53
LETMD1-233	ENST00000552433	GRM5	P41594	1212 aa		11.7	□□□□□ -0.54
LETMD1-233	ENST00000552433	WDR4	P57081	412 aa	Known RBP	11.7	□□□□□ -0.54
LETMD1-233	ENST00000552433	TPRN	Q4KMQ1	711 aa		11.7	□□□□□ -0.54
LETMD1-233	ENST00000552433	SH3BP5L	Q7L8J4	393 aa		11.7	□□□□□ -0.54
LETMD1-233	ENST00000552433	SH3RF1	Q7Z6J0	888 aa		11.7	□□□□□ -0.54
LETMD1-233	ENST00000552433	NR3C2	P08235	984 aa		11.68	□□□□□ -0.54
LETMD1-233	ENST00000552433	TIMP2	P16035	220 aa		11.68	□□□□□ -0.54
LETMD1-233	ENST00000552433	EPS8L1	Q8TE68	723 aa		11.68	□□□□□ -0.54
LETMD1-233	ENST00000552433	BRPF1	P55201	1214 aa	Predicted RBP	11.67	□□□□□ -0.54
LETMD1-233	ENST00000552433	TREML4	Q6UXN2	200 aa		11.67	□□□□□ -0.54
LETMD1-233	ENST00000552433	KLF16	Q9BXK1	252 aa	Predicted RBP	11.67	□□□□□ -0.54
LETMD1-233	ENST00000552433	FKBPL	Q9UIM3	349 aa		11.67	□□□□□ -0.54
LETMD1-233	ENST00000552433	RFC5	P40937	340 aa		11.66	□□□□□ -0.54
LETMD1-233	ENST00000552433	KIFC2	Q96AC6	838 aa		11.66	□□□□□ -0.54
LETMD1-233	ENST00000552433	C1QTNF2	Q9BXJ5	285 aa		11.66	□□□□□ -0.54
LETMD1-233	ENST00000552433	VASH1	Q7L8A9	365 aa	Predicted RBP	11.65	□□□□□ -0.54
LETMD1-233	ENST00000552433	ITPKC	Q96DU7	683 aa		11.65	□□□□□ -0.54
LETMD1-233	ENST00000552433	PCMTD1	Q96MG8	357 aa	Predicted RBP	11.65	□□□□□ -0.54
LETMD1-233	ENST00000552433	ZFAND3	Q9H8U3	227 aa		11.65	□□□□□ -0.54
LETMD1-233	ENST00000552433	HMX1	Q9NP08	348 aa	Predicted RBP	11.65	□□□□□ -0.54
LETMD1-233	ENST00000552433	ZIC2	O95409	532 aa	Predicted RBP	11.64	□□□□□ -0.55
LETMD1-233	ENST00000552433	NR5A1	Q13285	461 aa		11.64	□□□□□ -0.55
LETMD1-233	ENST00000552433	ZFP42	Q96MM3	310 aa		11.64	□□□□□ -0.55
LETMD1-233	ENST00000552433	USP17L8	P0C7I0	530 aa		11.63	□□□□□ -0.55
LETMD1-233	ENST00000552433	ERFE	Q4G0M1	354 aa		11.63	□□□□□ -0.55
LETMD1-233	ENST00000552433	PDXDC2P	Q6P474	469 aa		11.63	□□□□□ -0.55
LETMD1-233	ENST00000552433	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	11.63	□□□□□ -0.55
LETMD1-233	ENST00000552433	ARHGAP9	Q9BRR9	750 aa		11.63	□□□□□ -0.55
LETMD1-233	ENST00000552433	FSHR	P23945	695 aa		11.62	□□□□□ -0.55
LETMD1-233	ENST00000552433	PURB	Q96QR8	312 aa	Known RBP	11.62	□□□□□ -0.55
LETMD1-233	ENST00000552433	LCE2A	Q5TA79	106 aa	Predicted RBP	11.61	□□□□□ -0.55
LETMD1-233	ENST00000552433	MRPL14	Q6P1L8	145 aa	Known RBP	11.61	□□□□□ -0.55
LETMD1-233	ENST00000552433	GOPC	Q9HD26	462 aa		11.61	□□□□□ -0.55
LETMD1-233	ENST00000552433	WFS1	O76024	890 aa		11.6	□□□□□ -0.55
LETMD1-233	ENST00000552433	ZBTB33	Q86T24	672 aa		11.6	□□□□□ -0.55
LETMD1-233	ENST00000552433	TRMT44	Q8IYL2	757 aa	Known RBP	11.6	□□□□□ -0.55
LETMD1-233	ENST00000552433	NFX1	Q12986	1120 aa	Known RBP	11.59	□□□□□ -0.55
LETMD1-233	ENST00000552433	OCSTAMP	Q9BR26	566 aa		11.59	□□□□□ -0.55
LETMD1-233	ENST00000552433	SCARF1	Q14162	830 aa		11.58	□□□□□ -0.56
LETMD1-233	ENST00000552433	MAP4K5	Q9Y4K4	846 aa		11.58	□□□□□ -0.56
LETMD1-233	ENST00000552433	TERT	O14746	1132 aa	Known RBP	11.57	□□□□□ -0.56
LETMD1-233	ENST00000552433	PTK2	Q05397	1052 aa		11.57	□□□□□ -0.56
LETMD1-233	ENST00000552433	C6orf118	Q5T5N4	469 aa		11.57	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 159 ms