RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 SSTR3P32745 418 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-208ENST00000551691 SMCPP49901 116 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-208ENST00000551691 LCE2AQ5TA79 106 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-208ENST00000551691 NUDT12Q9BQG2 462 aa6.88□□□□□ -1.31
LIMA1-208ENST00000551691 WFS1O76024 890 aa6.87□□□□□ -1.31
LIMA1-208ENST00000551691 TTLL12Q14166 644 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-208ENST00000551691 LINC01559Q495D7 138 aa6.87□□□□□ -1.31
LIMA1-208ENST00000551691 RETREG3Q86VR2 466 aa6.87□□□□□ -1.31
LIMA1-208ENST00000551691 SPIRE2Q8WWL2 714 aa6.87□□□□□ -1.31
LIMA1-208ENST00000551691 URB2Q14146 1524 aaKnown RBP6.86□□□□□ -1.31
LIMA1-208ENST00000551691 FANCD2Q9BXW9 1451 aa6.86□□□□□ -1.31
LIMA1-208ENST00000551691 MOXD2PA6NHM9 499 aa6.86□□□□□ -1.31
LIMA1-208ENST00000551691 BMP1P13497 986 aa6.85□□□□□ -1.31
LIMA1-208ENST00000551691 BRPF1P55201 1214 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-208ENST00000551691 EHBP1Q8NDI1 1231 aa6.85□□□□□ -1.31
LIMA1-208ENST00000551691 MS4A1P11836 297 aa6.84□□□□□ -1.31
LIMA1-208ENST00000551691 WNT7BP56706 349 aa6.84□□□□□ -1.31
LIMA1-208ENST00000551691 NFX1Q12986 1120 aaKnown RBP6.84□□□□□ -1.31
LIMA1-208ENST00000551691 LCE2CQ5TA81 110 aa6.84□□□□□ -1.31
LIMA1-208ENST00000551691 SH3BP2P78314 561 aa6.83□□□□□ -1.32
LIMA1-208ENST00000551691 GIGYF2Q6Y7W6 1299 aaKnown RBP6.83□□□□□ -1.32
LIMA1-208ENST00000551691 ZC3H15Q8WU90 426 aaKnown RBP6.83□□□□□ -1.32
LIMA1-208ENST00000551691 TLL2Q9Y6L7 1015 aa6.83□□□□□ -1.32
LIMA1-208ENST00000551691 CCNYL3P0C7X3 344 aa6.82□□□□□ -1.32
LIMA1-208ENST00000551691 BARGINQ6ZT62 677 aa6.82□□□□□ -1.32
LIMA1-208ENST00000551691 ILDR2Q71H61 639 aa6.82□□□□□ -1.32
LIMA1-208ENST00000551691 PRR7Q8TB68 274 aa6.82□□□□□ -1.32
LIMA1-208ENST00000551691 TRIM47Q96LD4 638 aa6.82□□□□□ -1.32
LIMA1-208ENST00000551691 AQRO60306 1485 aaKnown RBP eCLIP6.81□□□□□ -1.32
LIMA1-208ENST00000551691 SIAH2O43255 324 aa6.81□□□□□ -1.32
LIMA1-208ENST00000551691 BAP1Q92560 729 aa6.81□□□□□ -1.32
LIMA1-208ENST00000551691 BEGAINQ9BUH8 593 aa6.81□□□□□ -1.32
LIMA1-208ENST00000551691 UNC93B1Q9H1C4 597 aa6.81□□□□□ -1.32
LIMA1-208ENST00000551691 SLC24A3Q9HC58 644 aa6.81□□□□□ -1.32
LIMA1-208ENST00000551691 WASF2Q9Y6W5 498 aa6.81□□□□□ -1.32
LIMA1-208ENST00000551691 ZMYND10O75800 440 aa6.8□□□□□ -1.32
LIMA1-208ENST00000551691 MROH2BQ7Z745 1585 aa6.8□□□□□ -1.32
LIMA1-208ENST00000551691 PCDHB15Q9Y5E8 787 aa6.8□□□□□ -1.32
LIMA1-208ENST00000551691 CHD1O14646 1710 aa6.79□□□□□ -1.32
LIMA1-208ENST00000551691 RSF1Q96T23 1441 aaPredicted RBP6.79□□□□□ -1.32
LIMA1-208ENST00000551691 VEGFBP49765 207 aa6.79□□□□□ -1.32
LIMA1-208ENST00000551691 CSPP1Q1MSJ5 1256 aa6.79□□□□□ -1.32
LIMA1-208ENST00000551691 TRIM46Q7Z4K8 759 aa6.79□□□□□ -1.32
LIMA1-208ENST00000551691 SENP2Q9HC62 589 aa6.79□□□□□ -1.32
LIMA1-208ENST00000551691 TERTO14746 1132 aaKnown RBP6.78□□□□□ -1.32
LIMA1-208ENST00000551691 CAPN5O15484 640 aaPredicted RBP6.78□□□□□ -1.32
LIMA1-208ENST00000551691 CTHP32929 405 aa6.78□□□□□ -1.32
LIMA1-208ENST00000551691 MTMR2Q13614 643 aa6.78□□□□□ -1.32
LIMA1-208ENST00000551691 AMHR2Q16671 573 aa6.78□□□□□ -1.32
LIMA1-208ENST00000551691 PTPRNQ16849 979 aa6.78□□□□□ -1.32
LIMA1-208ENST00000551691 PARP9Q8IXQ6 854 aa6.78□□□□□ -1.32
LIMA1-208ENST00000551691 FBXO41Q8TF61 875 aa6.78□□□□□ -1.32
LIMA1-208ENST00000551691 TBC1D2Q9BYX2 928 aa6.78□□□□□ -1.32
LIMA1-208ENST00000551691 EVA1BQ9NVM1 165 aa6.78□□□□□ -1.32
LIMA1-208ENST00000551691 PEG3Q9GZU2 1588 aa6.78□□□□□ -1.32
LIMA1-208ENST00000551691 KCNH2Q12809 1159 aa6.77□□□□□ -1.33
LIMA1-208ENST00000551691 CFAP99D6REC4 459 aa6.76□□□□□ -1.33
LIMA1-208ENST00000551691 SUPT5HO00267 1087 aaKnown RBP6.76□□□□□ -1.33
LIMA1-208ENST00000551691 ZNF511Q8NB15 262 aa6.76□□□□□ -1.33
LIMA1-208ENST00000551691 CABLES1Q8TDN4 633 aa6.76□□□□□ -1.33
LIMA1-208ENST00000551691 MAP10Q9P2G4 905 aa6.76□□□□□ -1.33
LIMA1-208ENST00000551691 IFT140Q96RY7 1462 aa6.76□□□□□ -1.33
LIMA1-208ENST00000551691 LMTK3Q96Q04 1460 aa6.75□□□□□ -1.33
LIMA1-208ENST00000551691 SOCS7O14512 581 aa6.75□□□□□ -1.33
LIMA1-208ENST00000551691 RSBN1LQ6PCB5 846 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-208ENST00000551691 SOBPA7XYQ1 873 aa6.74□□□□□ -1.33
LIMA1-208ENST00000551691 TRIM66O15016 1216 aa6.74□□□□□ -1.33
LIMA1-208ENST00000551691 NNTQ13423 1086 aa6.74□□□□□ -1.33
LIMA1-208ENST00000551691 ARID5BQ14865 1188 aa6.74□□□□□ -1.33
LIMA1-208ENST00000551691 TSC1Q92574 1164 aa6.74□□□□□ -1.33
LIMA1-208ENST00000551691 FOXJ1Q92949 421 aa6.74□□□□□ -1.33
LIMA1-208ENST00000551691 KIFC2Q96AC6 838 aa6.74□□□□□ -1.33
LIMA1-208ENST00000551691 CFTRP13569 1480 aa6.73□□□□□ -1.33
LIMA1-208ENST00000551691 HRCP23327 699 aa6.73□□□□□ -1.33
LIMA1-208ENST00000551691 CHMP7Q8WUX9 453 aaPredicted RBP6.73□□□□□ -1.33
LIMA1-208ENST00000551691 ZFP42Q96MM3 310 aa6.73□□□□□ -1.33
LIMA1-208ENST00000551691 PER1O15534 1290 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-208ENST00000551691 WIPF1O43516 503 aa6.72□□□□□ -1.33
LIMA1-208ENST00000551691 EIF4G3O43432 1585 aaKnown RBP6.72□□□□□ -1.33
LIMA1-208ENST00000551691 GAPVD1Q14C86 1478 aa6.72□□□□□ -1.33
LIMA1-208ENST00000551691 SPDYE5A6NIY4 337 aa6.71□□□□□ -1.34
LIMA1-208ENST00000551691 WDR4P57081 412 aaKnown RBP6.71□□□□□ -1.34
LIMA1-208ENST00000551691 FAM69CQ0P6D2 419 aa6.71□□□□□ -1.34
LIMA1-208ENST00000551691 LYPD8Q6UX82 237 aa6.71□□□□□ -1.34
LIMA1-208ENST00000551691 RIC3Q7Z5B4 369 aa6.71□□□□□ -1.34
LIMA1-208ENST00000551691 PURBQ96QR8 312 aaKnown RBP6.71□□□□□ -1.34
LIMA1-208ENST00000551691 LIMD1Q9UGP4 676 aa6.71□□□□□ -1.34
LIMA1-208ENST00000551691 SPTLC1O15269 473 aa6.7□□□□□ -1.34
LIMA1-208ENST00000551691 TIMP2P16035 220 aa6.7□□□□□ -1.34
LIMA1-208ENST00000551691 VARSP26640 1264 aaKnown RBP6.7□□□□□ -1.34
LIMA1-208ENST00000551691 GMPRP36959 345 aa6.7□□□□□ -1.34
LIMA1-208ENST00000551691 INSM1Q01101 510 aaPredicted RBP6.7□□□□□ -1.34
LIMA1-208ENST00000551691 AGERQ15109 404 aa6.7□□□□□ -1.34
LIMA1-208ENST00000551691 QPCTQ16769 361 aa6.7□□□□□ -1.34
LIMA1-208ENST00000551691 AK7Q96M32 723 aa6.7□□□□□ -1.34
LIMA1-208ENST00000551691 ZFAND3Q9H8U3 227 aa6.7□□□□□ -1.34
LIMA1-208ENST00000551691 NXF1Q9UBU9 619 aaKnown RBP6.7□□□□□ -1.34
LIMA1-208ENST00000551691 TDRD9Q8NDG6 1382 aaKnown RBP6.69□□□□□ -1.34
LIMA1-208ENST00000551691 C4orf48Q5BLP8 95 aa6.69□□□□□ -1.34
LIMA1-208ENST00000551691 DESI1Q6ICB0 168 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms