RNA–Protein interactions for RNA: ENST00000551567.1

TROAP-216, Transcript of trophinin associated protein, human

APPRIS ALT2 TSL 3

Gene TROAP, Length 577 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TROAP-216	ENST00000551567	BRWD3	Q6RI45	1802 aa		33.3	■■■□□ 2.92
TROAP-216	ENST00000551567	FAM83G	A6ND36	823 aa		33.3	■■■□□ 2.92
TROAP-216	ENST00000551567	COL14A1	Q05707	1796 aa	Known RBP	33.29	■■■□□ 2.92
TROAP-216	ENST00000551567	TRPM1	Q7Z4N2	1603 aa		33.29	■■■□□ 2.92
TROAP-216	ENST00000551567	CENPJ	Q9HC77	1338 aa	Predicted RBP	33.28	■■■□□ 2.92
TROAP-216	ENST00000551567	NEUROD1	Q13562	356 aa		33.28	■■■□□ 2.92
TROAP-216	ENST00000551567	VPS72	Q15906	364 aa		33.28	■■■□□ 2.92
TROAP-216	ENST00000551567	CCDC9	Q9Y3X0	531 aa	Known RBP	33.28	■■■□□ 2.92
TROAP-216	ENST00000551567	PHRF1	Q9P1Y6	1649 aa	Known RBP	33.25	■■■□□ 2.91
TROAP-216	ENST00000551567	ACE	P12821	1306 aa		33.25	■■■□□ 2.91
TROAP-216	ENST00000551567	POLR3A	O14802	1390 aa	Predicted RBP	33.24	■■■□□ 2.91
TROAP-216	ENST00000551567	CCDC61	Q9Y6R9	512 aa		33.24	■■■□□ 2.91
TROAP-216	ENST00000551567	SRPK2	P78362	688 aa	Known RBP	33.22	■■■□□ 2.91
TROAP-216	ENST00000551567	BTG4	Q9NY30	223 aa		33.22	■■■□□ 2.91
TROAP-216	ENST00000551567	NBPF8	Q3BBV2	869 aa		33.19	■■■□□ 2.9
TROAP-216	ENST00000551567	NUTM2G	Q5VZR2	741 aa		33.19	■■■□□ 2.9
TROAP-216	ENST00000551567	SEPT12	Q8IYM1	358 aa		33.19	■■■□□ 2.9
TROAP-216	ENST00000551567	PPIP5K1	Q6PFW1	1433 aa		33.19	■■■□□ 2.9
TROAP-216	ENST00000551567	PLEKHG3	A1L390	1219 aa		33.18	■■■□□ 2.9
TROAP-216	ENST00000551567	CABP2	Q9NPB3	220 aa		33.17	■■■□□ 2.9
TROAP-216	ENST00000551567	PRDM11	Q9NQV5	511 aa		33.16	■■■□□ 2.9
TROAP-216	ENST00000551567	ROCK2	O75116	1388 aa	Known RBP	33.14	■■■□□ 2.9
TROAP-216	ENST00000551567	KIAA0232	Q92628	1395 aa		33.13	■■■□□ 2.89
TROAP-216	ENST00000551567		A0A0G2JS52	829 aa		33.12	■■■□□ 2.89
TROAP-216	ENST00000551567	MYT1	Q01538	1121 aa		33.12	■■■□□ 2.89
TROAP-216	ENST00000551567	ONECUT3	O60422	494 aa	Predicted RBP	33.11	■■■□□ 2.89
TROAP-216	ENST00000551567	NRK	Q7Z2Y5	1582 aa		33.11	■■■□□ 2.89
TROAP-216	ENST00000551567	CHRNA2	Q15822	529 aa		33.09	■■■□□ 2.89
TROAP-216	ENST00000551567	FAM98C	Q17RN3	349 aa	Known RBP	33.09	■■■□□ 2.89
TROAP-216	ENST00000551567	CCDC125	Q86Z20	511 aa		33.09	■■■□□ 2.89
TROAP-216	ENST00000551567	ZC3H6	P61129	1189 aa	Known RBP	33.08	■■■□□ 2.89
TROAP-216	ENST00000551567	ABTB2	Q8N961	1025 aa		33.08	■■■□□ 2.89
TROAP-216	ENST00000551567	BLM	P54132	1417 aa	Predicted RBP	33.06	■■■□□ 2.88
TROAP-216	ENST00000551567	KRT27	Q7Z3Y8	459 aa		33.06	■■■□□ 2.88
TROAP-216	ENST00000551567	SPATA31A5	Q5VU36	1347 aa		33.04	■■■□□ 2.88
TROAP-216	ENST00000551567	EVC2	Q86UK5	1308 aa		33.04	■■■□□ 2.88
TROAP-216	ENST00000551567	SPATA31A7	Q8IWB4	1347 aa		33.04	■■■□□ 2.88
TROAP-216	ENST00000551567	CABP1	Q9NZU7	370 aa		33.04	■■■□□ 2.88
TROAP-216	ENST00000551567	USP19	O94966	1318 aa		33.02	■■■□□ 2.88
TROAP-216	ENST00000551567	THSD7A	Q9UPZ6	1657 aa		33.01	■■■□□ 2.88
TROAP-216	ENST00000551567	USP6	P35125	1406 aa		33.01	■■■□□ 2.87
TROAP-216	ENST00000551567	STRN4	Q9NRL3	753 aa		33	■■■□□ 2.87
TROAP-216	ENST00000551567	LMO7	Q8WWI1	1683 aa		32.97	■■■□□ 2.87
TROAP-216	ENST00000551567	BRD4	O60885	1362 aa	Predicted RBP	32.97	■■■□□ 2.87
TROAP-216	ENST00000551567	NLRP13	Q86W25	1043 aa		32.97	■■■□□ 2.87
TROAP-216	ENST00000551567	AKAP12	Q02952	1782 aa		32.96	■■■□□ 2.87
TROAP-216	ENST00000551567	TONSL	Q96HA7	1378 aa		32.96	■■■□□ 2.87
TROAP-216	ENST00000551567	PIK3C2A	O00443	1686 aa		32.95	■■■□□ 2.87
TROAP-216	ENST00000551567	CAMTA1	Q9Y6Y1	1673 aa		32.95	■■■□□ 2.87
TROAP-216	ENST00000551567	SF3B2	Q13435	895 aa	Known RBP	32.95	■■■□□ 2.87
TROAP-216	ENST00000551567	SPATA31A1	Q5TZJ5	1347 aa		32.95	■■■□□ 2.86
TROAP-216	ENST00000551567	CPD	O75976	1380 aa		32.95	■■■□□ 2.86
TROAP-216	ENST00000551567	DEFB132	Q7Z7B7	95 aa		32.94	■■■□□ 2.86
TROAP-216	ENST00000551567	SSH2	Q76I76	1423 aa		32.94	■■■□□ 2.86
TROAP-216	ENST00000551567	ZRANB1	Q9UGI0	708 aa		32.93	■■■□□ 2.86
TROAP-216	ENST00000551567	GC	P02774	474 aa		32.92	■■■□□ 2.86
TROAP-216	ENST00000551567	EVA1C	P58658	441 aa		32.9	■■■□□ 2.86
TROAP-216	ENST00000551567	NLRP6	P59044	892 aa		32.9	■■■□□ 2.86
TROAP-216	ENST00000551567	FAM182B	Q5T319	152 aa		32.9	■■■□□ 2.86
TROAP-216	ENST00000551567	CARD11	Q9BXL7	1154 aa		32.9	■■■□□ 2.86
TROAP-216	ENST00000551567	USP35	Q9P2H5	1018 aa		32.9	■■■□□ 2.86
TROAP-216	ENST00000551567	SLIT3	O75094	1523 aa		32.9	■■■□□ 2.86
TROAP-216	ENST00000551567	TRIM26	Q12899	539 aa	Predicted RBP	32.89	■■■□□ 2.86
TROAP-216	ENST00000551567	RGPD1	P0DJD0	1748 aa		32.88	■■■□□ 2.85
TROAP-216	ENST00000551567	ZBTB7C	A1YPR0	619 aa		32.87	■■■□□ 2.85
TROAP-216	ENST00000551567	LARP1	Q6PKG0	1096 aa	Known RBP	32.85	■■■□□ 2.85
TROAP-216	ENST00000551567	SBNO2	Q9Y2G9	1366 aa		32.84	■■■□□ 2.85
TROAP-216	ENST00000551567	COL5A2	P05997	1499 aa	Predicted RBP	32.83	■■■□□ 2.85
TROAP-216	ENST00000551567	MON2	Q7Z3U7	1717 aa		32.82	■■■□□ 2.85
TROAP-216	ENST00000551567	TTC21B	Q7Z4L5	1316 aa		32.81	■■■□□ 2.84
TROAP-216	ENST00000551567	ZNF692	Q9BU19	519 aa	Predicted RBP	32.81	■■■□□ 2.84
TROAP-216	ENST00000551567	TNS1	Q9HBL0	1735 aa	Known RBP	32.81	■■■□□ 2.84
TROAP-216	ENST00000551567	SRCAP	Q6ZRS2	3230 aa		32.81	■■■□□ 2.84
TROAP-216	ENST00000551567	CPSF1	Q10570	1443 aa	Known RBP	32.8	■■■□□ 2.84
TROAP-216	ENST00000551567	BAG6	P46379	1132 aa		32.79	■■■□□ 2.84
TROAP-216	ENST00000551567	KTN1	Q86UP2	1357 aa	Known RBP	32.79	■■■□□ 2.84
TROAP-216	ENST00000551567	BARGIN	Q6ZT62	677 aa		32.78	■■■□□ 2.84
TROAP-216	ENST00000551567	COL18A1	P39060	1754 aa		32.78	■■■□□ 2.84
TROAP-216	ENST00000551567	TCP11L2	Q8N4U5	519 aa		32.77	■■■□□ 2.84
TROAP-216	ENST00000551567	AATK	Q6ZMQ8	1374 aa		32.76	■■■□□ 2.83
TROAP-216	ENST00000551567	TTC21A	Q8NDW8	1320 aa		32.76	■■■□□ 2.83
TROAP-216	ENST00000551567	CRB1	P82279	1406 aa		32.74	■■■□□ 2.83
TROAP-216	ENST00000551567	PARP4	Q9UKK3	1724 aa	Known RBP	32.74	■■■□□ 2.83
TROAP-216	ENST00000551567	SOX12	O15370	315 aa		32.73	■■■□□ 2.83
TROAP-216	ENST00000551567	RGPD5	Q99666	1765 aa		32.73	■■■□□ 2.83
TROAP-216	ENST00000551567	CD163L1	Q9NR16	1453 aa		32.71	■■■□□ 2.83
TROAP-216	ENST00000551567	EN1	Q05925	392 aa	Predicted RBP	32.7	■■■□□ 2.83
TROAP-216	ENST00000551567	PDE3B	Q13370	1112 aa		32.7	■■■□□ 2.83
TROAP-216	ENST00000551567	FAM196A	Q6ZSG2	479 aa		32.7	■■■□□ 2.83
TROAP-216	ENST00000551567	TMC1	Q8TDI8	760 aa		32.7	■■■□□ 2.83
TROAP-216	ENST00000551567	THRAP3	Q9Y2W1	955 aa	Known RBP	32.7	■■■□□ 2.83
TROAP-216	ENST00000551567	NFAT5	O94916	1531 aa		32.7	■■■□□ 2.83
TROAP-216	ENST00000551567	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	32.68	■■■□□ 2.82
TROAP-216	ENST00000551567	KCNH5	Q8NCM2	988 aa		32.68	■■■□□ 2.82
TROAP-216	ENST00000551567	WNK3	Q9BYP7	1800 aa		32.67	■■■□□ 2.82
TROAP-216	ENST00000551567	TRIM37	O94972	964 aa		32.67	■■■□□ 2.82
TROAP-216	ENST00000551567	AXIN2	Q9Y2T1	843 aa		32.67	■■■□□ 2.82
TROAP-216	ENST00000551567	DISP2	A7MBM2	1401 aa		32.67	■■■□□ 2.82
TROAP-216	ENST00000551567	USP54	Q70EL1	1684 aa		32.66	■■■□□ 2.82
TROAP-216	ENST00000551567	ARHGEF25	Q86VW2	580 aa		32.66	■■■□□ 2.82

Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms