RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 UQCRHP07919 91 aa11.81□□□□□ -0.52
PTCH1-220ENST00000550136 XIRP1Q702N8 1843 aaKnown RBP11.81□□□□□ -0.52
PTCH1-220ENST00000550136 ZNF592Q92610 1267 aa11.81□□□□□ -0.52
PTCH1-220ENST00000550136 RTEL1-TNFRSF6BF6WH68 1400 aa11.8□□□□□ -0.52
PTCH1-220ENST00000550136 CEP120Q8N960 986 aa11.79□□□□□ -0.52
PTCH1-220ENST00000550136 IGSF3O75054 1194 aa11.78□□□□□ -0.52
PTCH1-220ENST00000550136 EGFL6Q8IUX8 553 aa11.78□□□□□ -0.52
PTCH1-220ENST00000550136 CFDP1Q9UEE9 299 aaPredicted RBP11.78□□□□□ -0.52
PTCH1-220ENST00000550136 GRPEL1Q9HAV7 217 aa11.77□□□□□ -0.52
PTCH1-220ENST00000550136 ZSCAN30Q86W11 494 aa11.77□□□□□ -0.53
PTCH1-220ENST00000550136 R3HCC1Q9Y3T6 440 aaKnown RBP11.77□□□□□ -0.53
PTCH1-220ENST00000550136 LRRC9Q6ZRR7 1453 aa11.76□□□□□ -0.53
PTCH1-220ENST00000550136 ROBO1Q9Y6N7 1651 aa11.76□□□□□ -0.53
PTCH1-220ENST00000550136 UBTFP17480 764 aaKnown RBP11.76□□□□□ -0.53
PTCH1-220ENST00000550136 SCAF11Q99590 1463 aaKnown RBP11.75□□□□□ -0.53
PTCH1-220ENST00000550136 KIF3BO15066 747 aa11.75□□□□□ -0.53
PTCH1-220ENST00000550136 KCNJ4P48050 445 aa11.75□□□□□ -0.53
PTCH1-220ENST00000550136 NBPF20Q3BBV1 942 aa11.75□□□□□ -0.53
PTCH1-220ENST00000550136 REM2Q8IYK8 340 aaPredicted RBP11.75□□□□□ -0.53
PTCH1-220ENST00000550136 CHMP4CQ96CF2 233 aa11.75□□□□□ -0.53
PTCH1-220ENST00000550136 MBD5Q9P267 1494 aa11.75□□□□□ -0.53
PTCH1-220ENST00000550136 CCNB3Q8WWL7 1395 aa11.74□□□□□ -0.53
PTCH1-220ENST00000550136 TSPYL1Q9H0U9 437 aa11.74□□□□□ -0.53
PTCH1-220ENST00000550136 JCADQ9P266 1359 aa11.74□□□□□ -0.53
PTCH1-220ENST00000550136 FYCO1Q9BQS8 1478 aa11.74□□□□□ -0.53
PTCH1-220ENST00000550136 ARHGAP23Q9P227 1491 aa11.73□□□□□ -0.53
PTCH1-220ENST00000550136 UBR1Q8IWV7 1749 aa11.73□□□□□ -0.53
PTCH1-220ENST00000550136 CBX1P83916 185 aa11.72□□□□□ -0.53
PTCH1-220ENST00000550136 MSNP26038 577 aaKnown RBP11.72□□□□□ -0.53
PTCH1-220ENST00000550136 EFCC1Q9HA90 598 aa11.72□□□□□ -0.53
PTCH1-220ENST00000550136 SLIT1O75093 1534 aa11.72□□□□□ -0.53
PTCH1-220ENST00000550136 PRR29P0C7W0 189 aa11.71□□□□□ -0.53
PTCH1-220ENST00000550136 ZNF772Q68DY9 489 aaPredicted RBP11.71□□□□□ -0.53
PTCH1-220ENST00000550136 NUDCQ9Y266 331 aa11.71□□□□□ -0.53
PTCH1-220ENST00000550136 TULP2O00295 520 aa11.71□□□□□ -0.54
PTCH1-220ENST00000550136 ERVK-7P63135 1459 aa11.71□□□□□ -0.54
PTCH1-220ENST00000550136 CDK12Q9NYV4 1490 aaPredicted RBP11.71□□□□□ -0.54
PTCH1-220ENST00000550136 PHLPP1O60346 1717 aa11.71□□□□□ -0.54
PTCH1-220ENST00000550136 TMEM94Q12767 1356 aa11.7□□□□□ -0.54
PTCH1-220ENST00000550136 MAP3K1Q13233 1512 aa11.7□□□□□ -0.54
PTCH1-220ENST00000550136 NCOA2Q15596 1464 aa11.7□□□□□ -0.54
PTCH1-220ENST00000550136 CFAP44Q96MT7 982 aa11.7□□□□□ -0.54
PTCH1-220ENST00000550136 CCDC66A2RUB6 948 aa11.69□□□□□ -0.54
PTCH1-220ENST00000550136 TRIM6-TRIM34B2RNG4 842 aa11.69□□□□□ -0.54
PTCH1-220ENST00000550136 NBPF1Q3BBV0 1214 aa11.69□□□□□ -0.54
PTCH1-220ENST00000550136 SASS6Q6UVJ0 657 aa11.69□□□□□ -0.54
PTCH1-220ENST00000550136 TRIM34Q9BYJ4 488 aa11.69□□□□□ -0.54
PTCH1-220ENST00000550136 ABCC3O15438 1527 aa11.69□□□□□ -0.54
PTCH1-220ENST00000550136 CCDC173Q0VFZ6 552 aa11.69□□□□□ -0.54
PTCH1-220ENST00000550136 BECN1Q14457 450 aa11.69□□□□□ -0.54
PTCH1-220ENST00000550136 TMEM132AQ24JP5 1023 aa11.69□□□□□ -0.54
PTCH1-220ENST00000550136 BANK1Q8NDB2 785 aa11.69□□□□□ -0.54
PTCH1-220ENST00000550136 ZNF500O60304 480 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-220ENST00000550136 LTKP29376 864 aa11.68□□□□□ -0.54
PTCH1-220ENST00000550136 LMOD3Q0VAK6 560 aa11.68□□□□□ -0.54
PTCH1-220ENST00000550136 HSP90AB3PQ58FF7 597 aa11.68□□□□□ -0.54
PTCH1-220ENST00000550136 ZNF771Q7L3S4 317 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-220ENST00000550136 TXNDC2Q86VQ3 553 aa11.68□□□□□ -0.54
PTCH1-220ENST00000550136 TIGD1Q96MW7 591 aa11.68□□□□□ -0.54
PTCH1-220ENST00000550136 SPATA31A6Q5VVP1 1343 aa11.68□□□□□ -0.54
PTCH1-220ENST00000550136 ZNF644Q9H582 1327 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-220ENST00000550136 SETQ01105 290 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-220ENST00000550136 CSPP1Q1MSJ5 1256 aa11.68□□□□□ -0.54
PTCH1-220ENST00000550136 PPP1R9BQ96SB3 815 aa11.68□□□□□ -0.54
PTCH1-220ENST00000550136 LRP6O75581 1613 aa11.67□□□□□ -0.54
PTCH1-220ENST00000550136 LOC102724159A0A0B4J2E5 919 aa11.67□□□□□ -0.54
PTCH1-220ENST00000550136 PWP2Q15269 919 aaKnown RBP11.67□□□□□ -0.54
PTCH1-220ENST00000550136 ZBTB9Q96C00 473 aa11.67□□□□□ -0.54
PTCH1-220ENST00000550136 CCDC141Q6ZP82 1450 aa11.67□□□□□ -0.54
PTCH1-220ENST00000550136 COL16A1Q07092 1604 aaPredicted RBP11.67□□□□□ -0.54
PTCH1-220ENST00000550136 FGD6Q6ZV73 1430 aa11.67□□□□□ -0.54
PTCH1-220ENST00000550136 KCNA6P17658 529 aa11.67□□□□□ -0.54
PTCH1-220ENST00000550136 TIAM1Q13009 1591 aa11.66□□□□□ -0.54
PTCH1-220ENST00000550136 SPDYE2BA6NHP3 402 aa11.66□□□□□ -0.54
PTCH1-220ENST00000550136 SPDYE6P0CI01 402 aa11.66□□□□□ -0.54
PTCH1-220ENST00000550136 SPDYE2Q495Y8 402 aa11.66□□□□□ -0.54
PTCH1-220ENST00000550136 SH3BP1Q9Y3L3 701 aa11.66□□□□□ -0.54
PTCH1-220ENST00000550136 KIF3AQ9Y496 699 aa11.66□□□□□ -0.54
PTCH1-220ENST00000550136 CAPN2P17655 700 aa11.65□□□□□ -0.54
PTCH1-220ENST00000550136 RXRBP28702 533 aa11.65□□□□□ -0.54
PTCH1-220ENST00000550136 ATP2B3Q16720 1220 aa11.65□□□□□ -0.54
PTCH1-220ENST00000550136 PUS7Q96PZ0 661 aaKnown RBP11.65□□□□□ -0.54
PTCH1-220ENST00000550136 PSMD1Q99460 953 aa11.65□□□□□ -0.54
PTCH1-220ENST00000550136 EID1Q9Y6B2 187 aa11.65□□□□□ -0.54
PTCH1-220ENST00000550136 PRDM15P57071 1507 aaPredicted RBP11.65□□□□□ -0.54
PTCH1-220ENST00000550136 OS9Q13438 667 aaPredicted RBP11.65□□□□□ -0.54
PTCH1-220ENST00000550136 NKTRP30414 1462 aaKnown RBP11.65□□□□□ -0.54
PTCH1-220ENST00000550136 CAMSAP2Q08AD1 1489 aa11.65□□□□□ -0.54
PTCH1-220ENST00000550136 HS1BP3Q53T59 392 aa11.64□□□□□ -0.55
PTCH1-220ENST00000550136 PROSER2Q86WR7 435 aaPredicted RBP11.64□□□□□ -0.55
PTCH1-220ENST00000550136 GZF1Q9H116 711 aaPredicted RBP11.64□□□□□ -0.55
PTCH1-220ENST00000550136 NINLQ9Y2I6 1382 aa11.64□□□□□ -0.55
PTCH1-220ENST00000550136 IRF6O14896 467 aa11.64□□□□□ -0.55
PTCH1-220ENST00000550136 MEX3CQ5U5Q3 659 aaKnown RBP11.64□□□□□ -0.55
PTCH1-220ENST00000550136 NWD1Q149M9 1564 aa11.64□□□□□ -0.55
PTCH1-220ENST00000550136 MSH6P52701 1360 aa11.63□□□□□ -0.55
PTCH1-220ENST00000550136 SATB1Q01826 763 aa11.63□□□□□ -0.55
PTCH1-220ENST00000550136 EP400NLQ6ZTU2 488 aa11.63□□□□□ -0.55
PTCH1-220ENST00000550136 MYCBPQ99417 103 aaPredicted RBP11.63□□□□□ -0.55
PTCH1-220ENST00000550136 SLAIN2Q9P270 581 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms