RNA–Protein interactions for RNA: ENST00000547310.1

LGR5-204, Transcript of leucine rich repeat containing G protein-coupled receptor 5, human

TSL 3

Gene LGR5, Length 576 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LGR5-204	ENST00000547310	TIMP2	P16035	220 aa		10.32	□□□□□ -0.76
LGR5-204	ENST00000547310	JUND	P17535	347 aa		10.32	□□□□□ -0.76
LGR5-204	ENST00000547310	MAN1A2	O60476	641 aa		10.31	□□□□□ -0.76
LGR5-204	ENST00000547310	ADAM23	O75077	832 aa		10.31	□□□□□ -0.76
LGR5-204	ENST00000547310	IRS1	P35568	1242 aa		10.31	□□□□□ -0.76
LGR5-204	ENST00000547310	NNT	Q13423	1086 aa		10.31	□□□□□ -0.76
LGR5-204	ENST00000547310	KLF16	Q9BXK1	252 aa	Predicted RBP	10.31	□□□□□ -0.76
LGR5-204	ENST00000547310	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	10.3	□□□□□ -0.76
LGR5-204	ENST00000547310	ZNF385C	Q66K41	422 aa	Predicted RBP	10.3	□□□□□ -0.76
LGR5-204	ENST00000547310	NLRP7	Q8WX94	980 aa		10.3	□□□□□ -0.76
LGR5-204	ENST00000547310	CNTNAP3B	Q96NU0	1288 aa		10.3	□□□□□ -0.76
LGR5-204	ENST00000547310	CNTNAP3	Q9BZ76	1288 aa		10.3	□□□□□ -0.76
LGR5-204	ENST00000547310	ADH1C	P00326	375 aa		10.29	□□□□□ -0.76
LGR5-204	ENST00000547310	KRTAP9-2	Q9BYQ4	174 aa		10.29	□□□□□ -0.76
LGR5-204	ENST00000547310	KDM4A	O75164	1064 aa		10.28	□□□□□ -0.76
LGR5-204	ENST00000547310	ARHGEF15	O94989	841 aa		10.28	□□□□□ -0.76
LGR5-204	ENST00000547310	GPR161	Q8N6U8	529 aa	Known RBP	10.28	□□□□□ -0.76
LGR5-204	ENST00000547310	NUDT12	Q9BQG2	462 aa		10.28	□□□□□ -0.76
LGR5-204	ENST00000547310	CD46	P15529	392 aa		10.27	□□□□□ -0.77
LGR5-204	ENST00000547310	CLCN1	P35523	988 aa		10.27	□□□□□ -0.77
LGR5-204	ENST00000547310	WDR4	P57081	412 aa	Known RBP	10.27	□□□□□ -0.77
LGR5-204	ENST00000547310	USP46	P62068	366 aa		10.27	□□□□□ -0.77
LGR5-204	ENST00000547310	VARS	P26640	1264 aa	Known RBP	10.26	□□□□□ -0.77
LGR5-204	ENST00000547310	PDE4D	Q08499	809 aa		10.26	□□□□□ -0.77
LGR5-204	ENST00000547310	SCARF2	Q96GP6	870 aa	Predicted RBP	10.25	□□□□□ -0.77
LGR5-204	ENST00000547310	PSMG3-AS1	Q96PY0	264 aa		10.25	□□□□□ -0.77
LGR5-204	ENST00000547310	GPCPD1	Q9NPB8	672 aa		10.25	□□□□□ -0.77
LGR5-204	ENST00000547310	TLL2	Q9Y6L7	1015 aa		10.25	□□□□□ -0.77
LGR5-204	ENST00000547310	SVOP	Q8N4V2	548 aa		10.24	□□□□□ -0.77
LGR5-204	ENST00000547310	SLURP2	P0DP57	97 aa		10.23	□□□□□ -0.77
LGR5-204	ENST00000547310	NANOS1	Q8WY41	292 aa	Known RBP	10.23	□□□□□ -0.77
LGR5-204	ENST00000547310	KRTAP9-6	A0A140TA67	174 aa		10.22	□□□□□ -0.77
LGR5-204	ENST00000547310	MDM2	Q00987	491 aa	Predicted RBP	10.22	□□□□□ -0.77
LGR5-204	ENST00000547310	PARP9	Q8IXQ6	854 aa		10.22	□□□□□ -0.77
LGR5-204	ENST00000547310	COL25A1	Q9BXS0	654 aa	Predicted RBP	10.22	□□□□□ -0.77
LGR5-204	ENST00000547310	MARS	P56192	900 aa	Known RBP	10.21	□□□□□ -0.77
LGR5-204	ENST00000547310	MSTN	O14793	375 aa		10.2	□□□□□ -0.78
LGR5-204	ENST00000547310	FAM217B	Q9NTX9	383 aa	Predicted RBP	10.2	□□□□□ -0.78
LGR5-204	ENST00000547310	TTLL12	Q14166	644 aa	Predicted RBP	10.19	□□□□□ -0.78
LGR5-204	ENST00000547310	GIGYF2	Q6Y7W6	1299 aa	Known RBP	10.19	□□□□□ -0.78
LGR5-204	ENST00000547310	HLA-C	Q95604	372 aa		10.19	□□□□□ -0.78
LGR5-204	ENST00000547310	SOS2	Q07890	1332 aa	Predicted RBP	10.18	□□□□□ -0.78
LGR5-204	ENST00000547310	HOXA2	O43364	376 aa		10.18	□□□□□ -0.78
LGR5-204	ENST00000547310	RETREG3	Q86VR2	466 aa		10.18	□□□□□ -0.78
LGR5-204	ENST00000547310	CCNYL3	P0C7X3	344 aa		10.17	□□□□□ -0.78
LGR5-204	ENST00000547310	BRPF1	P55201	1214 aa	Predicted RBP	10.17	□□□□□ -0.78
LGR5-204	ENST00000547310	C6orf118	Q5T5N4	469 aa		10.17	□□□□□ -0.78
LGR5-204	ENST00000547310	WHAMM	Q8TF30	809 aa		10.17	□□□□□ -0.78
LGR5-204	ENST00000547310	EVA1B	Q9NVM1	165 aa		10.17	□□□□□ -0.78
LGR5-204	ENST00000547310	BAP1	Q92560	729 aa		10.16	□□□□□ -0.78
LGR5-204	ENST00000547310	CDK15	Q96Q40	435 aa		10.16	□□□□□ -0.78
LGR5-204	ENST00000547310	UNC93B1	Q9H1C4	597 aa		10.16	□□□□□ -0.78
LGR5-204	ENST00000547310	SSTR3	P32745	418 aa	Predicted RBP	10.15	□□□□□ -0.78
LGR5-204	ENST00000547310	ZNF511	Q8NB15	262 aa		10.15	□□□□□ -0.78
LGR5-204	ENST00000547310	DNMT3L	Q9UJW3	386 aa		10.15	□□□□□ -0.78
LGR5-204	ENST00000547310	UPP2	O95045	317 aa		10.14	□□□□□ -0.79
LGR5-204	ENST00000547310	ZIC2	O95409	532 aa	Predicted RBP	10.14	□□□□□ -0.79
LGR5-204	ENST00000547310	RNFT1	Q5M7Z0	435 aa		10.14	□□□□□ -0.79
LGR5-204	ENST00000547310	SYMPK	Q92797	1274 aa	Known RBP	10.14	□□□□□ -0.79
LGR5-204	ENST00000547310	KDM4C	Q9H3R0	1056 aa		10.14	□□□□□ -0.79
LGR5-204	ENST00000547310	BMP2	P12643	396 aa		10.13	□□□□□ -0.79
LGR5-204	ENST00000547310	PLA2G4E	Q3MJ16	856 aa		10.13	□□□□□ -0.79
LGR5-204	ENST00000547310	SPOCK3	Q9BQ16	436 aa		10.13	□□□□□ -0.79
LGR5-204	ENST00000547310	ZFAND3	Q9H8U3	227 aa		10.13	□□□□□ -0.79
LGR5-204	ENST00000547310	MS4A1	P11836	297 aa		10.12	□□□□□ -0.79
LGR5-204	ENST00000547310	NEUROD2	Q15784	382 aa		10.12	□□□□□ -0.79
LGR5-204	ENST00000547310	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	10.12	□□□□□ -0.79
LGR5-204	ENST00000547310	LINC00528	Q8N1L1	170 aa		10.12	□□□□□ -0.79
LGR5-204	ENST00000547310	ITPKC	Q96DU7	683 aa		10.12	□□□□□ -0.79
LGR5-204	ENST00000547310	GPBP1L1	Q9HC44	474 aa	Predicted RBP	10.12	□□□□□ -0.79
LGR5-204	ENST00000547310	PTPRN	Q16849	979 aa		10.11	□□□□□ -0.79
LGR5-204	ENST00000547310	LINC01559	Q495D7	138 aa		10.11	□□□□□ -0.79
LGR5-204	ENST00000547310	FAM174A	Q8TBP5	190 aa		10.11	□□□□□ -0.79
LGR5-204	ENST00000547310	KCNH2	Q12809	1159 aa		10.1	□□□□□ -0.79
LGR5-204	ENST00000547310	NR5A1	Q13285	461 aa		10.1	□□□□□ -0.79
LGR5-204	ENST00000547310	KRTAP1-3	Q8IUG1	177 aa		10.1	□□□□□ -0.79
LGR5-204	ENST00000547310	PTS	Q03393	145 aa		10.09	□□□□□ -0.79
LGR5-204	ENST00000547310		Q8N3U1	123 aa		10.09	□□□□□ -0.79
LGR5-204	ENST00000547310	MEIOB	Q8N635	442 aa		10.09	□□□□□ -0.79
LGR5-204	ENST00000547310	SPTLC1	O15269	473 aa		10.08	□□□□□ -0.8
LGR5-204	ENST00000547310	ITGB2	P05107	769 aa		10.08	□□□□□ -0.8
LGR5-204	ENST00000547310	GUCA2A	Q02747	115 aa		10.08	□□□□□ -0.8
LGR5-204	ENST00000547310	DDRGK1	Q96HY6	314 aa		10.08	□□□□□ -0.8
LGR5-204	ENST00000547310	DCAF5	Q96JK2	942 aa		10.07	□□□□□ -0.8
LGR5-204	ENST00000547310	PROC	P04070	461 aa		10.06	□□□□□ -0.8
LGR5-204	ENST00000547310	BEGAIN	Q9BUH8	593 aa		10.06	□□□□□ -0.8
LGR5-204	ENST00000547310	DIXDC1	Q155Q3	683 aa		10.05	□□□□□ -0.8
LGR5-204	ENST00000547310		K7ELQ4	463 aa	Predicted RBP	10.04	□□□□□ -0.8
LGR5-204	ENST00000547310	NR3C2	P08235	984 aa		10.04	□□□□□ -0.8
LGR5-204	ENST00000547310	CCDC155	Q8N6L0	562 aa		10.04	□□□□□ -0.8
LGR5-204	ENST00000547310	TSEN34	Q9BSV6	310 aa	Known RBP	10.04	□□□□□ -0.8
LGR5-204	ENST00000547310	FAM117A	Q9C073	453 aa		10.04	□□□□□ -0.8
LGR5-204	ENST00000547310	PHF20L1	A8MW92	1017 aa		10.03	□□□□□ -0.8
LGR5-204	ENST00000547310	GRM5	P41594	1212 aa		10.03	□□□□□ -0.8
LGR5-204	ENST00000547310	TTLL8	A6PVC2	850 aa		10.02	□□□□□ -0.81
LGR5-204	ENST00000547310	GJA5	P36382	358 aa		10.02	□□□□□ -0.81
LGR5-204	ENST00000547310	LYPD4	Q6UWN0	246 aa		10.02	□□□□□ -0.81
LGR5-204	ENST00000547310	SPIRE2	Q8WWL2	714 aa		10.02	□□□□□ -0.81
LGR5-204	ENST00000547310	SLC35F4	A4IF30	521 aa		10.01	□□□□□ -0.81
LGR5-204	ENST00000547310	SV2A	Q7L0J3	742 aa		10.01	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms