RNA–Protein interactions for RNA: ENST00000546304.1

PRKDC-211, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 2

Gene PRKDC, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-211ENST00000546304 KDM2AQ9Y2K7 1162 aa9.52□□□□□ -0.89
PRKDC-211ENST00000546304 TET3O43151 1660 aa9.51□□□□□ -0.89
PRKDC-211ENST00000546304 EFCAB6Q5THR3 1501 aa9.51□□□□□ -0.89
PRKDC-211ENST00000546304 HRO43593 1189 aa9.51□□□□□ -0.89
PRKDC-211ENST00000546304 EN1Q05925 392 aaPredicted RBP9.51□□□□□ -0.89
PRKDC-211ENST00000546304 C6orf132Q5T0Z8 1188 aa9.51□□□□□ -0.89
PRKDC-211ENST00000546304 ZBED2Q9BTP6 218 aa9.51□□□□□ -0.89
PRKDC-211ENST00000546304 CNTLNQ9NXG0 1405 aa9.5□□□□□ -0.89
PRKDC-211ENST00000546304 KIF3BO15066 747 aa9.5□□□□□ -0.89
PRKDC-211ENST00000546304 LMTK2Q8IWU2 1503 aa9.5□□□□□ -0.89
PRKDC-211ENST00000546304 MLECQ14165 292 aa9.49□□□□□ -0.89
PRKDC-211ENST00000546304 SETD5Q9C0A6 1442 aa9.48□□□□□ -0.89
PRKDC-211ENST00000546304 GRXCR2A6NFK2 248 aa9.48□□□□□ -0.89
PRKDC-211ENST00000546304 COL9A1P20849 921 aa9.48□□□□□ -0.89
PRKDC-211ENST00000546304 OSBPP22059 807 aa9.48□□□□□ -0.89
PRKDC-211ENST00000546304 TRIM26Q12899 539 aaPredicted RBP9.48□□□□□ -0.89
PRKDC-211ENST00000546304 RBM33Q96EV2 1170 aaKnown RBP9.48□□□□□ -0.89
PRKDC-211ENST00000546304 KANK1Q14678 1352 aa9.48□□□□□ -0.89
PRKDC-211ENST00000546304 PTPRMP28827 1452 aa9.47□□□□□ -0.89
PRKDC-211ENST00000546304 GGT6Q6P531 493 aa9.47□□□□□ -0.89
PRKDC-211ENST00000546304 RNF166Q96A37 237 aaPredicted RBP9.47□□□□□ -0.89
PRKDC-211ENST00000546304 E9PCH4 1651 aa9.47□□□□□ -0.89
PRKDC-211ENST00000546304 PREX1Q8TCU6 1659 aa9.47□□□□□ -0.89
PRKDC-211ENST00000546304 RAB3GAP2Q9H2M9 1393 aa9.47□□□□□ -0.89
PRKDC-211ENST00000546304 PZPP20742 1482 aa9.47□□□□□ -0.89
PRKDC-211ENST00000546304 MAP3K7O43318 606 aa9.46□□□□□ -0.9
PRKDC-211ENST00000546304 PRIM1P49642 420 aaKnown RBP9.46□□□□□ -0.9
PRKDC-211ENST00000546304 MYO3AQ8NEV4 1616 aa9.45□□□□□ -0.9
PRKDC-211ENST00000546304 SPHKAPQ2M3C7 1700 aa9.45□□□□□ -0.9
PRKDC-211ENST00000546304 CFAP65Q6ZU64 1925 aaKnown RBP9.45□□□□□ -0.9
PRKDC-211ENST00000546304 BHMG1C9JSJ3 638 aaPredicted RBP9.45□□□□□ -0.9
PRKDC-211ENST00000546304 ONECUT3O60422 494 aaPredicted RBP9.44□□□□□ -0.9
PRKDC-211ENST00000546304 TSR1Q2NL82 804 aaKnown RBP9.44□□□□□ -0.9
PRKDC-211ENST00000546304 ESF1Q9H501 851 aaKnown RBP9.44□□□□□ -0.9
PRKDC-211ENST00000546304 NPATQ14207 1427 aa9.44□□□□□ -0.9
PRKDC-211ENST00000546304 ARHGAP31Q2M1Z3 1444 aa9.44□□□□□ -0.9
PRKDC-211ENST00000546304 RPRD2Q5VT52 1461 aaKnown RBP9.44□□□□□ -0.9
PRKDC-211ENST00000546304 SPATA31D1Q6ZQQ2 1576 aa9.44□□□□□ -0.9
PRKDC-211ENST00000546304 ZNF142P52746 1687 aaPredicted RBP9.44□□□□□ -0.9
PRKDC-211ENST00000546304 ERVK-7P63135 1459 aa9.43□□□□□ -0.9
PRKDC-211ENST00000546304 NUP155O75694 1391 aa9.43□□□□□ -0.9
PRKDC-211ENST00000546304 WASHC2CQ9Y4E1 1318 aa9.43□□□□□ -0.9
PRKDC-211ENST00000546304 MLLT3P42568 568 aaPredicted RBP9.43□□□□□ -0.9
PRKDC-211ENST00000546304 SYNMO15061 1565 aa9.42□□□□□ -0.9
PRKDC-211ENST00000546304 CERKQ8TCT0 537 aa9.42□□□□□ -0.9
PRKDC-211ENST00000546304 STAC3Q96MF2 364 aa9.42□□□□□ -0.9
PRKDC-211ENST00000546304 RABGEF1Q9UJ41 708 aa9.42□□□□□ -0.9
PRKDC-211ENST00000546304 SETD1BQ9UPS6 1966 aaKnown RBP9.41□□□□□ -0.9
PRKDC-211ENST00000546304 ZMYM3Q14202 1370 aa9.41□□□□□ -0.9
PRKDC-211ENST00000546304 PROX2Q3B8N5 592 aa9.41□□□□□ -0.9
PRKDC-211ENST00000546304 TRPM2O94759 1503 aa9.41□□□□□ -0.9
PRKDC-211ENST00000546304 ACIN1Q9UKV3 1341 aaKnown RBP9.4□□□□□ -0.9
PRKDC-211ENST00000546304 SEMA3EO15041 775 aa9.4□□□□□ -0.9
PRKDC-211ENST00000546304 NBPF3Q9H094 633 aa9.4□□□□□ -0.9
PRKDC-211ENST00000546304 PIK3C2BO00750 1634 aa9.4□□□□□ -0.9
PRKDC-211ENST00000546304 CEP170BQ9Y4F5 1589 aaPredicted RBP9.4□□□□□ -0.9
PRKDC-211ENST00000546304 TRIM6-TRIM34B2RNG4 842 aa9.39□□□□□ -0.91
PRKDC-211ENST00000546304 NOS1P29475 1434 aa9.39□□□□□ -0.91
PRKDC-211ENST00000546304 TESPA1A2RU30 521 aaPredicted RBP9.38□□□□□ -0.91
PRKDC-211ENST00000546304 MRPL50Q8N5N7 158 aaKnown RBP9.38□□□□□ -0.91
PRKDC-211ENST00000546304 TRIM52Q96A61 297 aa9.38□□□□□ -0.91
PRKDC-211ENST00000546304 KDM5AP29375 1690 aaKnown RBP9.38□□□□□ -0.91
PRKDC-211ENST00000546304 CLTCL1P53675 1640 aa9.38□□□□□ -0.91
PRKDC-211ENST00000546304 TNRQ92752 1358 aa9.37□□□□□ -0.91
PRKDC-211ENST00000546304 UGGT1Q9NYU2 1555 aa9.37□□□□□ -0.91
PRKDC-211ENST00000546304 ADGRB3O60242 1522 aa9.37□□□□□ -0.91
PRKDC-211ENST00000546304 NLRP1Q9C000 1473 aa9.37□□□□□ -0.91
PRKDC-211ENST00000546304 PCGF6Q9BYE7 350 aa9.37□□□□□ -0.91
PRKDC-211ENST00000546304 KIAA1468Q9P260 1216 aa9.37□□□□□ -0.91
PRKDC-211ENST00000546304 MYO5BQ9ULV0 1848 aa9.37□□□□□ -0.91
PRKDC-211ENST00000546304 UBR1Q8IWV7 1749 aa9.36□□□□□ -0.91
PRKDC-211ENST00000546304 LMTK3Q96Q04 1460 aa9.36□□□□□ -0.91
PRKDC-211ENST00000546304 HRCP23327 699 aa9.36□□□□□ -0.91
PRKDC-211ENST00000546304 CEBPAP49715 358 aaPredicted RBP9.36□□□□□ -0.91
PRKDC-211ENST00000546304 PRSS12P56730 875 aa9.36□□□□□ -0.91
PRKDC-211ENST00000546304 LAPTM4BQ86VI4 370 aa9.36□□□□□ -0.91
PRKDC-211ENST00000546304 CDHR5Q9HBB8 845 aa9.36□□□□□ -0.91
PRKDC-211ENST00000546304 RBM27Q9P2N5 1060 aaKnown RBP9.36□□□□□ -0.91
PRKDC-211ENST00000546304 UHRF1BP1Q6BDS2 1440 aa9.36□□□□□ -0.91
PRKDC-211ENST00000546304 KIF1BO60333 1816 aa9.35□□□□□ -0.91
PRKDC-211ENST00000546304 A2ML1A8K2U0 1454 aa9.35□□□□□ -0.91
PRKDC-211ENST00000546304 PTPRTO14522 1441 aa9.35□□□□□ -0.91
PRKDC-211ENST00000546304 SLC24A1O60721 1099 aa9.35□□□□□ -0.91
PRKDC-211ENST00000546304 CDCA7LQ96GN5 454 aa9.35□□□□□ -0.91
PRKDC-211ENST00000546304 NPDC1Q9NQX5 325 aaPredicted RBP9.35□□□□□ -0.91
PRKDC-211ENST00000546304 TSKSQ9UJT2 592 aa9.35□□□□□ -0.91
PRKDC-211ENST00000546304 FBXO31Q5XUX0 539 aaPredicted RBP9.34□□□□□ -0.91
PRKDC-211ENST00000546304 PACS2Q86VP3 889 aa9.34□□□□□ -0.91
PRKDC-211ENST00000546304 PLA2R1Q13018 1463 aa9.34□□□□□ -0.91
PRKDC-211ENST00000546304 POLR1AO95602 1720 aaPredicted RBP9.34□□□□□ -0.92
PRKDC-211ENST00000546304 SMYD5Q6GMV2 418 aa9.33□□□□□ -0.92
PRKDC-211ENST00000546304 KCTD12Q96CX2 325 aaKnown RBP9.33□□□□□ -0.92
PRKDC-211ENST00000546304 MPHOSPH9Q99550 1183 aa9.33□□□□□ -0.92
PRKDC-211ENST00000546304 HCSTQ9UBK5 93 aa9.33□□□□□ -0.92
PRKDC-211ENST00000546304 TMEM131LA2VDJ0 1609 aa9.33□□□□□ -0.92
PRKDC-211ENST00000546304 TTC13Q8NBP0 860 aa9.32□□□□□ -0.92
PRKDC-211ENST00000546304 DHX57Q6P158 1386 aaKnown RBP9.32□□□□□ -0.92
PRKDC-211ENST00000546304 GOLGA8CPA6NN73 597 aa9.31□□□□□ -0.92
PRKDC-211ENST00000546304 FAM198AQ9UFP1 575 aa9.31□□□□□ -0.92
PRKDC-211ENST00000546304 CCDC144AA2RUR9 1427 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms