RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 ROCK2O75116 1388 aaKnown RBP13.37□□□□□ -0.27
YBX3-218ENST00000546298 ONECUT3O60422 494 aaPredicted RBP13.37□□□□□ -0.27
YBX3-218ENST00000546298 CABP2Q9NPB3 220 aa13.37□□□□□ -0.27
YBX3-218ENST00000546298 EVC2Q86UK5 1308 aa13.37□□□□□ -0.27
YBX3-218ENST00000546298 KIAA1210Q9ULL0 1709 aa13.36□□□□□ -0.27
YBX3-218ENST00000546298 TRIM26Q12899 539 aaPredicted RBP13.36□□□□□ -0.27
YBX3-218ENST00000546298 ABTB2Q8N961 1025 aa13.36□□□□□ -0.27
YBX3-218ENST00000546298 BRD4O60885 1362 aaPredicted RBP13.35□□□□□ -0.27
YBX3-218ENST00000546298 A0A0G2JS52 829 aa13.35□□□□□ -0.27
YBX3-218ENST00000546298 MYT1Q01538 1121 aa13.35□□□□□ -0.27
YBX3-218ENST00000546298 NUTM2GQ5VZR2 741 aa13.35□□□□□ -0.27
YBX3-218ENST00000546298 NLRP13Q86W25 1043 aa13.35□□□□□ -0.27
YBX3-218ENST00000546298 ARHGEF28Q8N1W1 1705 aaKnown RBP13.34□□□□□ -0.27
YBX3-218ENST00000546298 CABP1Q9NZU7 370 aa13.34□□□□□ -0.27
YBX3-218ENST00000546298 RGPD8O14715 1765 aaPredicted RBP13.33□□□□□ -0.28
YBX3-218ENST00000546298 PPIP5K1Q6PFW1 1433 aa13.33□□□□□ -0.28
YBX3-218ENST00000546298 SF3B2Q13435 895 aaKnown RBP13.33□□□□□ -0.28
YBX3-218ENST00000546298 KRT27Q7Z3Y8 459 aa13.33□□□□□ -0.28
YBX3-218ENST00000546298 TONSLQ96HA7 1378 aa13.32□□□□□ -0.28
YBX3-218ENST00000546298 ZC3H6P61129 1189 aaKnown RBP13.32□□□□□ -0.28
YBX3-218ENST00000546298 ZNF692Q9BU19 519 aaPredicted RBP13.32□□□□□ -0.28
YBX3-218ENST00000546298 SPATA31A5Q5VU36 1347 aa13.32□□□□□ -0.28
YBX3-218ENST00000546298 SPATA31A7Q8IWB4 1347 aa13.32□□□□□ -0.28
YBX3-218ENST00000546298 KIAA0232Q92628 1395 aa13.32□□□□□ -0.28
YBX3-218ENST00000546298 EVA1CP58658 441 aa13.31□□□□□ -0.28
YBX3-218ENST00000546298 CHRNA2Q15822 529 aa13.31□□□□□ -0.28
YBX3-218ENST00000546298 FAM98CQ17RN3 349 aaKnown RBP13.31□□□□□ -0.28
YBX3-218ENST00000546298 CARD11Q9BXL7 1154 aa13.31□□□□□ -0.28
YBX3-218ENST00000546298 NLRP6P59044 892 aa13.3□□□□□ -0.28
YBX3-218ENST00000546298 STRN4Q9NRL3 753 aa13.3□□□□□ -0.28
YBX3-218ENST00000546298 ZRANB1Q9UGI0 708 aa13.3□□□□□ -0.28
YBX3-218ENST00000546298 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.3□□□□□ -0.28
YBX3-218ENST00000546298 TRPM3Q9HCF6 1732 aaPredicted RBP13.3□□□□□ -0.28
YBX3-218ENST00000546298 MARF1Q9Y4F3 1742 aaKnown RBP13.3□□□□□ -0.28
YBX3-218ENST00000546298 GLI3P10071 1580 aa13.29□□□□□ -0.28
YBX3-218ENST00000546298 GCP02774 474 aa13.29□□□□□ -0.28
YBX3-218ENST00000546298 USP19O94966 1318 aa13.29□□□□□ -0.28
YBX3-218ENST00000546298 BLMP54132 1417 aaPredicted RBP13.29□□□□□ -0.28
YBX3-218ENST00000546298 CPDO75976 1380 aa13.28□□□□□ -0.28
YBX3-218ENST00000546298 ALS2Q96Q42 1657 aa13.28□□□□□ -0.28
YBX3-218ENST00000546298 SPATA31A1Q5TZJ5 1347 aa13.27□□□□□ -0.29
YBX3-218ENST00000546298 USP6P35125 1406 aa13.27□□□□□ -0.29
YBX3-218ENST00000546298 ITSN1Q15811 1721 aa13.27□□□□□ -0.29
YBX3-218ENST00000546298 NWD2Q9ULI1 1742 aa13.27□□□□□ -0.29
YBX3-218ENST00000546298 SBNO2Q9Y2G9 1366 aa13.26□□□□□ -0.29
YBX3-218ENST00000546298 COL14A1Q05707 1796 aaKnown RBP13.25□□□□□ -0.29
YBX3-218ENST00000546298 SLC24A1O60721 1099 aa13.25□□□□□ -0.29
YBX3-218ENST00000546298 BARGINQ6ZT62 677 aa13.25□□□□□ -0.29
YBX3-218ENST00000546298 TTC21BQ7Z4L5 1316 aa13.24□□□□□ -0.29
YBX3-218ENST00000546298 TTC21AQ8NDW8 1320 aa13.24□□□□□ -0.29
YBX3-218ENST00000546298 BAG6P46379 1132 aa13.24□□□□□ -0.29
YBX3-218ENST00000546298 TCP11L2Q8N4U5 519 aa13.24□□□□□ -0.29
YBX3-218ENST00000546298 KCNH5Q8NCM2 988 aa13.24□□□□□ -0.29
YBX3-218ENST00000546298 USP35Q9P2H5 1018 aa13.24□□□□□ -0.29
YBX3-218ENST00000546298 ABCA3Q99758 1704 aa13.23□□□□□ -0.29
YBX3-218ENST00000546298 ZBTB7CA1YPR0 619 aa13.23□□□□□ -0.29
YBX3-218ENST00000546298 LARP1Q6PKG0 1096 aaKnown RBP13.23□□□□□ -0.29
YBX3-218ENST00000546298 DEFB132Q7Z7B7 95 aa13.23□□□□□ -0.29
YBX3-218ENST00000546298 PUS7Q96PZ0 661 aaKnown RBP13.23□□□□□ -0.29
YBX3-218ENST00000546298 THRAP3Q9Y2W1 955 aaKnown RBP13.23□□□□□ -0.29
YBX3-218ENST00000546298 PLCH1Q4KWH8 1693 aa13.23□□□□□ -0.29
YBX3-218ENST00000546298 TOPAZ1Q8N9V7 1692 aa13.23□□□□□ -0.29
YBX3-218ENST00000546298 SSH2Q76I76 1423 aa13.22□□□□□ -0.29
YBX3-218ENST00000546298 TRPM1Q7Z4N2 1603 aa13.22□□□□□ -0.29
YBX3-218ENST00000546298 PDE3BQ13370 1112 aa13.22□□□□□ -0.29
YBX3-218ENST00000546298 FAM196AQ6ZSG2 479 aa13.22□□□□□ -0.29
YBX3-218ENST00000546298 TMC1Q8TDI8 760 aa13.22□□□□□ -0.29
YBX3-218ENST00000546298 AATKQ6ZMQ8 1374 aa13.21□□□□□ -0.29
YBX3-218ENST00000546298 KTN1Q86UP2 1357 aaKnown RBP13.21□□□□□ -0.29
YBX3-218ENST00000546298 HDGFL2Q7Z4V5 671 aaPredicted RBP13.21□□□□□ -0.29
YBX3-218ENST00000546298 TERF2IPQ9NYB0 399 aa13.2□□□□□ -0.3
YBX3-218ENST00000546298 QRICH2Q9H0J4 1663 aa13.2□□□□□ -0.3
YBX3-218ENST00000546298 CPSF1Q10570 1443 aaKnown RBP13.2□□□□□ -0.3
YBX3-218ENST00000546298 C11orf95C9JLR9 678 aaPredicted RBP13.19□□□□□ -0.3
YBX3-218ENST00000546298 FAM182BQ5T319 152 aa13.19□□□□□ -0.3
YBX3-218ENST00000546298 ARHGEF25Q86VW2 580 aa13.19□□□□□ -0.3
YBX3-218ENST00000546298 TOM1L2Q6ZVM7 507 aa13.18□□□□□ -0.3
YBX3-218ENST00000546298 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.18□□□□□ -0.3
YBX3-218ENST00000546298 SLC12A5Q9H2X9 1139 aa13.18□□□□□ -0.3
YBX3-218ENST00000546298 NRAPQ86VF7 1730 aa13.18□□□□□ -0.3
YBX3-218ENST00000546298 CAMTA1Q9Y6Y1 1673 aa13.18□□□□□ -0.3
YBX3-218ENST00000546298 ST20-MTHFSA0A0A6YYL1 179 aa13.17□□□□□ -0.3
YBX3-218ENST00000546298 SOX12O15370 315 aa13.17□□□□□ -0.3
YBX3-218ENST00000546298 CDCA7Q9BWT1 371 aaPredicted RBP13.17□□□□□ -0.3
YBX3-218ENST00000546298 TIMELESSQ9UNS1 1208 aa13.17□□□□□ -0.3
YBX3-218ENST00000546298 CRYBG1Q9Y4K1 1723 aa13.16□□□□□ -0.3
YBX3-218ENST00000546298 NRKQ7Z2Y5 1582 aa13.16□□□□□ -0.3
YBX3-218ENST00000546298 CRB1P82279 1406 aa13.16□□□□□ -0.3
YBX3-218ENST00000546298 CSB-PGBD3P0DP91 1061 aa13.16□□□□□ -0.3
YBX3-218ENST00000546298 EN1Q05925 392 aaPredicted RBP13.16□□□□□ -0.3
YBX3-218ENST00000546298 WDR17Q8IZU2 1322 aa13.15□□□□□ -0.3
YBX3-218ENST00000546298 SLIT3O75094 1523 aa13.15□□□□□ -0.3
YBX3-218ENST00000546298 PHRF1Q9P1Y6 1649 aaKnown RBP13.15□□□□□ -0.3
YBX3-218ENST00000546298 TRIM37O94972 964 aa13.15□□□□□ -0.3
YBX3-218ENST00000546298 TESK2Q96S53 571 aa13.15□□□□□ -0.3
YBX3-218ENST00000546298 AXIN2Q9Y2T1 843 aa13.15□□□□□ -0.3
YBX3-218ENST00000546298 USP31Q70CQ4 1352 aa13.15□□□□□ -0.3
YBX3-218ENST00000546298 NINLQ9Y2I6 1382 aa13.15□□□□□ -0.3
YBX3-218ENST00000546298 COL5A2P05997 1499 aaPredicted RBP13.15□□□□□ -0.3
YBX3-218ENST00000546298 APBA3O96018 575 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms